mRNA_H-paniculata_contig2482.6739.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI) HSP 1 Score: 379 bits (974), Expect = 6.470e-129 Identity = 181/243 (74.49%), Postives = 209/243 (86.01%), Query Frame = 2
Query: 5 KTFRGTSKQPVACSYNVLEYASNTHEMYVRRYGG-RSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASPTGRKWEKAACMNELVLASSIAKEIDAFL 730
+ ++GTSKQPV+CSYNVLEYAS T+E Y +RYGG R RA +VGMNPGPWGMVQTGVPFGEV FV+DWL V G VGRP+KEH KRPV GFDC+RSEVSG RLWGFFER+FGTADAWGDKMF YN+CPLTFMS+SGGNITPDKL PAER+++D+ACG AL ++ISAL+P V+VAVGNFAG++C EA+++SGL A G VEVVVVNHPSPASPTG KWEKA C+NELVL SS +KEID FL
Sbjct: 76 RKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHTKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGL--NAAGKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFL 316
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT) HSP 1 Score: 222 bits (566), Expect = 3.090e-68 Identity = 119/226 (52.65%), Postives = 144/226 (63.72%), Query Frame = 2
Query: 20 TSKQPVACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASPTG-RKWEKAACMNELVL 694
T PVAC Y L+YA H+ Y+ RYG R R + +GMNPGP+GM QTGVPFGEV V+DWL + V +P EH KRPVEGF+C RSEVSG+RLWG F +FGTADA+ F NYCPL +MSA+G N+TPDKLP AE V+DAC A L +VI L+P L+ +G FA R A E+SG +KA G + HPSPASP R W +AA L
Sbjct: 22 TFAAPVACVYRPLQYAWRPHQRYLERYG-RGPKRVVFLGMNPGPFGMAQTGVPFGEVAAVRDWLEIHEPVDKPAGEHPKRPVEGFNCTRSEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDKLPAAEMAPVEDACLAHLAEVIGLLKPSFLIGIGGFAEQRLLRAAETSG--SKAAIGR------ILHPSPASPAANRGWAEAASRQLAAL 238
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: A0A3N5QI00_9GAMM (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5QI00_9GAMM) HSP 1 Score: 221 bits (564), Expect = 5.280e-68 Identity = 110/214 (51.40%), Postives = 140/214 (65.42%), Query Frame = 2
Query: 32 PVACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASP-TGRKWEKA 670
PV C YN LEYA HE+Y+ RYGG + L++GMNPGP+GM QTGVPFG+VT V+DWLG++ V RP EH KRPV GFDC R+E+SG RLWG+ +FGT + ++ F NYCPL F++ASG N+TPDKLP AE++ V AC AL V+ LRP +++ VG FA R AL GG ++ + + HPSPASP R W A
Sbjct: 22 PVCCVYNPLEYARAPHELYLSRYGGGPKE-VLLLGMNPGPFGMAQTGVPFGDVTMVRDWLGIVAPVARPRDEHPKRPVLGFDCHRTEISGTRLWGWARDRFGTPQRFFERFFVANYCPLAFVAASGANLTPDKLPAAEQRAVSSACDEALRAVVRLLRPQIVIGVGGFAERRARAAL----------GGENIAIGTILHPSPASPLANRGWAGA 224
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: A0A832H887_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A832H887_9BACT) HSP 1 Score: 216 bits (551), Expect = 5.280e-66 Identity = 114/215 (53.02%), Postives = 140/215 (65.12%), Query Frame = 2
Query: 32 PVACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASPTG-RKWEKAA 673
PV YN L+YA+ HE Y+ R+ + L +GMNPGPWGM QTGVPFGE++ V+DW+G+ G VG+P+ EH KRP+EGF C RSEVSG+RLWG F ++FGTA+A+ FA NYCPL FM+ASG N+TPDKLP AE + AC L D+ ALRP +V VG FA AR EAL G + V HPSPASP R W +AA
Sbjct: 24 PVTHVYNPLDYAAPVHEAYLTRFA-TTPKLVLFLGMNPGPWGMAQTGVPFGEISAVRDWMGLTGPVGKPSNEHPKRPIEGFACTRSEVSGRRLWGLFAQRFGTAEAFFRDHFAANYCPLVFMAASGANLTPDKLPAAETAPLFAACDRHLRDLAEALRPRWVVGVGGFAEARAREALA----------GLDLNFARVLHPSPASPAANRGWAEAA 227
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: A0A2A2QJU9_9BACT (Single-stranded DNA-binding protein n=1 Tax=Verrucomicrobiae bacterium Tous-C5FEB TaxID=1982331 RepID=A0A2A2QJU9_9BACT) HSP 1 Score: 214 bits (545), Expect = 4.100e-65 Identity = 112/214 (52.34%), Postives = 136/214 (63.55%), Query Frame = 2
Query: 35 VACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASPTG-RKWEKAA 673
VAC YN LEYA HE Y+ RYG R L +GMNPGP+GM QTGVPFGEV V+DWLG+ +V +P KEH KRP+EGF C+RSEVSG+RLWG F +FG AD++ + F NYCPL +MS +G N+TPDKLP +E + V+ AC L VI L P L+ VG FA R A + G + V V HPSPASP R W +AA
Sbjct: 24 VACVYNPLEYAWQAHEAYLSRYGSGK-KRVLFLGMNPGPFGMAQTGVPFGEVDAVRDWLGICEDVEKPLKEHPKRPIEGFACKRSEVSGRRLWGLFAERFGKADSFFKEHFVMNYCPLVWMSTTGANLTPDKLPASEMQPVEQACLKHLAKVIELLDPSYLIGVGGFAEDRLIRAAAACG--------SKATVGRVLHPSPASPAANRGWAEAA 228
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: UPI0019034DE8 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI0019034DE8) HSP 1 Score: 213 bits (543), Expect = 9.300e-65 Identity = 113/226 (50.00%), Postives = 145/226 (64.16%), Query Frame = 2
Query: 32 PVACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASPTG-RKWEKAACMNELVLASSI 706
PVA +Y LEYA HE Y++++G R L +GMNPGP+GM QTGVPFGE+ VKDW+G+ GEVG+P EH KRP+EGF C+RSEVSG+RLWG F+ +FGTADA+ + F NYCPL +MSA+G N+TPDK+ A V+ AC L I AL+P L+ VG FA R A E+ G + + V HPSPASP R W +AA + +LA +
Sbjct: 26 PVAYTYLPLEYAWKPHEDYLKKFGSGK-KRVLFLGMNPGPFGMAQTGVPFGEIAAVKDWMGIQGEVGKPAHEHPKRPIEGFACQRSEVSGRRLWGLFQDRFGTADAFFEDHFVTNYCPLVWMSATGANLTPDKIAAASMVEVEGACLRHLASTILALQPEFLIGVGAFAEQRIRTAAETVG--------SKASIGKVLHPSPASPAANRGWAEAA--TKQLLAQGV 240
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: A0A7X7QN26_9BACT (Single-stranded DNA-binding protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7QN26_9BACT) HSP 1 Score: 213 bits (542), Expect = 1.020e-64 Identity = 108/220 (49.09%), Postives = 140/220 (63.64%), Query Frame = 2
Query: 32 PVACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASPTGRKWEKAACMNELV 691
PVA YN L+YA H Y+ R+G + R + +GMNPGPWGM Q GVPFGEV+ V+DWLG++G VG P + +PV+GF CRRSEVSG+RLWG F +FGTA+A+ + F NYCPL F++ASG N+TPD LP AER+ + AC L ++ LRP +V +G FA R EAL+ G+ VEV + HPSPASP + AA +L
Sbjct: 20 PVAYVYNPLDYAWEPHRAYLTRWGATAPRRVVFLGMNPGPWGMAQVGVPFGEVSVVRDWLGLVGLVGAPARLCPSKPVDGFGCRRSEVSGRRLWGLFAERFGTAEAFFREHFVANYCPLMFLAASGRNLTPDALPAAEREGLQRACDEHLRSLVGILRPTWVVGIGGFAFERAREALQ----------GHPVEVGRILHPSPASPAANRGWAAAASQQLA 229
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: A0A2E4MYD8_9BACT (Single-stranded DNA-binding protein n=2 Tax=FCB group TaxID=1783270 RepID=A0A2E4MYD8_9BACT) HSP 1 Score: 213 bits (542), Expect = 1.050e-64 Identity = 111/225 (49.33%), Postives = 145/225 (64.44%), Query Frame = 2
Query: 5 KTFRGTSKQP-VACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASP-TGRKWEKAA 673
K RG S QP V+ YN LEYA + H Y+ RY ID AL++GMNPGPWGMVQTGVPFGEV V+DW+G+ V +P +EH KR +EGF C+RSEVSG+RLWG+ +FG+ +A+ D+ F +NYCPL FM SG N TPDKLPP ER + C AL +++ RP +++ VG FA +R + L G+++ + V HPSPASP R W + A
Sbjct: 12 KAVRGLSFQPPVSHVYNPLEYALDAHRTYLDRYCRSGID-ALLIGMNPGPWGMVQTGVPFGEVELVRDWMGIQTGVEKPKQEHPKRLIEGFSCQRSEVSGRRLWGWARDRFGSPEAFFDRFFVWNYCPLAFMEESGRNRTPDKLPPDERNALYAPCDKALSRIVANCRPGMILGVGKFAESRAKDVL-----------GDNIPIGTVLHPSPASPIANRGWSEQA 224
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: UPI001B8AC5B4 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter ambystomatis TaxID=2824561 RepID=UPI001B8AC5B4) HSP 1 Score: 213 bits (542), Expect = 1.310e-64 Identity = 113/215 (52.56%), Postives = 144/215 (66.98%), Query Frame = 2
Query: 32 PVACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASPTG-RKWEKAA 673
PV+ +YN LEYA HE+Y+ +YG + R L +GMNPGP+GM QTGVPFGE+ V+DW+G+ VG+P EH+KRP+EGF C +SEVSG+RLWG F +FGTA+A+ F NYCPL +MS++G N+TPDKL AE + V+ AC A L +VI L+P LV VG FA R A A KAGG ++ V HPSPASP R W +AA
Sbjct: 25 PVSHAYNPLEYARVPHELYLSKYG-KGKKRVLFLGMNPGPFGMAQTGVPFGEIAAVRDWMGIEAPVGKPVPEHLKRPIEGFACPKSEVSGRRLWGLFAERFGTAEAFFKDHFVANYCPLVWMSSTGANLTPDKLSSAEMEPVEQACLAHLAEVIGILQPEWLVGVGAFAEERLRRA------AAKAGG--EFKIGRVLHPSPASPAANRGWSEAA 230
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Match: A0A651HAY8_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A651HAY8_9BACT) HSP 1 Score: 213 bits (541), Expect = 1.920e-64 Identity = 109/211 (51.66%), Postives = 136/211 (64.45%), Query Frame = 2
Query: 32 PVACSYNVLEYASNTHEMYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGRPTKEHVKRPVEGFDCRRSEVSGKRLWGFFERKFGTADAWGDKMFAYNYCPLTFMSASGGNITPDKLPPAERKIVDDACGAALVDVISALRPCVLVAVGNFAGARCCEALESSGLATKAGGGNSVEVVVVNHPSPASP-TGRKW 661
PV YN L+YA +H Y+ Y G S R + +GMNPGPWGM QTGVPFGEV V+DWLG+ VG+P +EH KRPVEGFDC RSEVSG+RLWG F FG A+ + F NYCPL FM+A+G N+TPD+LP ER +++ AC L D+IS L+ +V VG FA RC E + +G G V + + HPSPASP R+W
Sbjct: 27 PVDTVYNPLQYAWESHRRYLSTYAGGS-KRVVFLGMNPGPWGMAQTGVPFGEVAAVRDWLGITAPVGKPVREHPKRPVEGFDCVRSEVSGRRLWGLFAEHFGAAELFFRDHFVANYCPLVFMTATGANLTPDRLPARERTLLEHACDCHLHDLISILKAEWVVGVGAFA-VRCAERVARAG-------GLDVRIGTLLHPSPASPLANREW 228 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2482.6739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2482.6739.1 >prot_H-paniculata_contig2482.6739.1 ID=prot_H-paniculata_contig2482.6739.1|Name=mRNA_H-paniculata_contig2482.6739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp MYVRRYGGRSIDRALIVGMNPGPWGMVQTGVPFGEVTFVKDWLGVLGEVGback to top mRNA from alignment at H-paniculata_contig2482:9725..18153- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2482.6739.1 ID=mRNA_H-paniculata_contig2482.6739.1|Name=mRNA_H-paniculata_contig2482.6739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8429bp|location=Sequence derived from alignment at H-paniculata_contig2482:9725..18153- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2482:9725..18153- >mRNA_H-paniculata_contig2482.6739.1 ID=mRNA_H-paniculata_contig2482.6739.1|Name=mRNA_H-paniculata_contig2482.6739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig2482:9725..18153- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |