prot_H-paniculata_contig2481.6738.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2481.6738.1
Unique Nameprot_H-paniculata_contig2481.6738.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length699
Homology
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: D8LLY0_ECTSI (WD-40 repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY0_ECTSI)

HSP 1 Score: 477 bits (1227), Expect = 1.300e-144
Identity = 340/847 (40.14%), Postives = 419/847 (49.47%), Query Frame = 0
Query:    1 MSQSADTRWVLSGGDDRTVRLWDTEAFERKLTC-SDETRVARAAGRAGAIAADAALGWECVRELMGHTAAVRDVAFNPKFEGPPSSEEREPESRSARQISTARETALEHMLASASTDLTLRIWDLSFNPRIPRYTLRGHRGVVYGCRFEPSGLRLAXXXXXXXXXXXXVL-----------------------------------------------------------------------------------------------------EEYRERLVVPKSVLDQCTENPCPNKAVSEGFSLSVTLLNDSGKDLRTEEYYRGCKLVIRARGLNRFTGLFVAAVSAEGLWGGFNVMFMYRTHVGNRYMLARETVWATLREIPPPSPPAALIRSTSFKPRKRNFDTVARTQLFADSFKEGNWERAAMMLSATARLDFGKIKVVGASQVIDDIQKFLGRNLIVSN-----------------------------------------GADRHQRIPKKKXXXXXXXXXXXCKSDSKETRGKEG--------GARSGEDGSDRRPRSAAEYSAXXXXXXXXRE--------------------------GWKRGR-----RWSSASLSEG--------------------------------------------------EEDPGVRAEAEKQVIAELKRLKRLQAAGVGAFKEASACV--LALAKAQKRVSSKRNKEQAKGLLDSAGITVKDPQAGLKVLVWDGQFGADVPELRMPLPEYYPVSRTPYDENEDVGARAMEQATAAGEGAAQAMMEEMQAETVSEADTIRRLTDALLKRERNLRQGATRR 613
            M QS++ RW+LSGGDD TVRLWDTEAF RKL+   +E R A+AA RAGA+AAD ALGWEC REL+GHTAAVRDV FNP F GPP  +E   E       S      L  +LASASTDLT+RIWDLSFNPR+ R+ L+GH+GVV  CRF PSG RLA            VL                                                                                                     +EYRE L +PK+VL QC  +PCP +AVS GFSL+VT+LNDSGKD RTEEYYRGCKLV+RAR L +FTGL+VA VSAEGLW GF  +F + T V ++ +L RETVW TLRE PPP+PPAA+  +T  KPRKR FDTVART +FA + K G+W  A MMLS  A+L F K+K  GA++V D+I+K LGRN+ V N                                         G  +H                   +  S  + G  G        GAR+G  G ++   S      XXXXXXXX                            G K GR     R +  S   G                                                  EE   +R   EK+V AEL  L RL+AAGV ++KE    +  L+LAKA+KR    R K Q+KGLLD+AGITVKDP+  LKVLVWDG FGADV E+RM LPE YP + TPYD+NED  AR + +A A G+ AA A++EEM+AE   + D   ++ +A+L+R++ LR+  TRR
Sbjct:  211 MRQSSNGRWILSGGDDLTVRLWDTEAFARKLSDPKNEKRAAKAAARAGAVAADLALGWECARELVGHTAAVRDVEFNPLFGGPPEDQEDAQEEGEGGPGSEGAPVRLACVLASASTDLTVRIWDLSFNPRVARFALKGHKGVVSACRFAPSGDRLASCSADGTIRLWNVLNGTNVFCYEXXXXXXXXXXXXXXXXXXXXXXDIGERAIRVWFADMPLYDRDPVQFGLRLRWTRSGLIKRVRANTESSAMGFFLSRQEDRESRESSDESEGEKEYRELLKIPKTVLTQCDASPCPTQAVSNGFSLTVTILNDSGKDTRTEEYYRGCKLVLRARALKKFTGLYVAGVSAEGLWEGFEAIFRFPTIVASKSVLGRETVWVTLRERPPPTPPAAIFAATRLKPRKRLFDTVARTGVFAKALKAGDWAEATMMLSVAAKLQFSKVKATGATEVADEIRKVLGRNIAVHNARSVGVAWTSVCVSHEPPDXXXXXXXXXXXXXXXXXXXXXXGGKKHPNSKAAPGTTAVSGKGTTPEVTSPGSPGSVGTAAATVVTGARAGATGKEKSKPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKTGRLGGEDRDTGESGGSGREKGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATDPSSCDEETTAIRDSVEKEVRAELANLNRLRAAGVASWKELGHAMGLLSLAKARKR-DKVRAKGQSKGLLDAAGITVKDPKVDLKVLVWDGFFGADVKEMRMQLPELYPSTSTPYDQNEDFAARTLGEAIAVGDRAAPALIEEMRAEKKKKVDPAGKMVNAVLERDQQLRRVGTRR 1056          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLY0_ECTSI1.300e-14440.14WD-40 repeat-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 452..472
NoneNo IPR availablePANTHERPTHR42968:SF10IP10415Pcoord: 4..274
NoneNo IPR availablePANTHERPTHR42968FAMILY NOT NAMEDcoord: 4..274
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 10..24
score: 36.92
coord: 154..168
score: 42.74
coord: 110..124
score: 40.98
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 128..167
e-value: 1.0E-9
score: 48.3
coord: 56..123
e-value: 1.8E-6
score: 37.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 4..23
e-value: 5.8E-4
score: 20.6
coord: 132..167
e-value: 7.5E-7
score: 29.8
coord: 57..123
e-value: 0.15
score: 13.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..168
score: 15.02
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..32
score: 11.077
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 109..125
score: 8.57
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 10..24
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 110..124
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 154..168
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..32
score: 10.601
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 91..176
score: 17.482
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 4..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2481contigH-paniculata_contig2481:11031..19332 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2481.6738.1mRNA_H-paniculata_contig2481.6738.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2481 4536..19524 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2481.6738.1 ID=prot_H-paniculata_contig2481.6738.1|Name=mRNA_H-paniculata_contig2481.6738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=699bp
MSQSADTRWVLSGGDDRTVRLWDTEAFERKLTCSDETRVARAAGRAGAIA
ADAALGWECVRELMGHTAAVRDVAFNPKFEGPPSSEEREPESRSARQIST
ARETALEHMLASASTDLTLRIWDLSFNPRIPRYTLRGHRGVVYGCRFEPS
GLRLASSSADGTVRLWDVLEEYRERLVVPKSVLDQCTENPCPNKAVSEGF
SLSVTLLNDSGKDLRTEEYYRGCKLVIRARGLNRFTGLFVAAVSAEGLWG
GFNVMFMYRTHVGNRYMLARETVWATLREIPPPSPPAALIRSTSFKPRKR
NFDTVARTQLFADSFKEGNWERAAMMLSATARLDFGKIKVVGASQVIDDI
QKFLGRNLIVSNGADRHQRIPKKKKQRRRHRHRRRCKSDSKETRGKEGGA
RSGEDGSDRRPRSAAEYSAGSQGSSSSREGWKRGRRWSSASLSEGEEDPG
VRAEAEKQVIAELKRLKRLQAAGVGAFKEASACVLALAKAQKRVSSKRNK
EQAKGLLDSAGITVKDPQAGLKVLVWDGQFGADVPELRMPLPEYYPVSRT
PYDENEDVGARAMEQATAAGEGAAQAMMEEMQAETVSEADTIRRLTDALL
KRERNLRQGATRRLGGPKSWVVHRFDHLGSPLHASFTWASFGQGFSHDDR
TLHMSFSHHHFMTFSHHHCMNWFAYGRVISVPNMIPIHEWSCKFCPTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf