mRNA_H-paniculata_contig2481.6738.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: D8LLY0_ECTSI (WD-40 repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY0_ECTSI) HSP 1 Score: 555 bits (1429), Expect = 1.070e-165 Identity = 382/908 (42.07%), Postives = 467/908 (51.43%), Query Frame = 1
Query: 10 QQAREDREAAAEKFRRIEEERLLHEEEGLTFSNGIVTRYRRWRASPALAAVLPAHPCPVHAMSQSADTRWVLSGGDDRTVRLWDTEAFERKLTC-SDETRVARAAGRAGAIAADAALGWECVRELMGHTAAVRDVAFNPKFEGPPSSEEREPESRSARQISTARETALEHMLASASTDLTLRIWDLSFNPRIPRYTLRGHRGVVYGCRFEPSGLRLAXXXXXXXXXXXXVL-----------------------------------------------------------------------------------------------------EEYRERLVVPKSVLDQCTENPCPNKAVSEGFSLSVTLLNDSGKDLRTEEYYRGCKLVIRARGLNRFTGLFVAAVSAEGLWGGFNVMFMYRTHVGNRYMLARETVWATLREIPPPSPPAALIRSTSFKPRKRNFDTVARTQLFADSFKEGNWERAAMMLSATARLDFGKIKVVGASQVIDDIQKFLGRNLIVSN-----------------------------------------GADRHQRIPKKKXXXXXXXXXXXCKSDSKETRGKEG--------GARSGEDGSDRRPRSAAEYSAXXXXXXXXRE--------------------------GWKRGR-----RWSSASLSEG--------------------------------------------------EEDPGVRAEAEKQVIAELKRLKRLQAAGVGAFKEASACV--LALAKAQKRVSSKRNKEQAKGLLDSAGITVKDPQAGLKVLVWDGQFGADVPELRMPLPEYYPVSRTPYDENEDVGARAMEQATAAGEGAAQAMMEEMQAETVSEADTIRRLTDALLKRERNLRQGATRR 2031
+Q REDR AAA K + EE RL EEEGLTF++G+V +RRWRAS ALA VLPAHPCPVHAM QS++ RW+LSGGDD TVRLWDTEAF RKL+ +E R A+AA RAGA+AAD ALGWEC REL+GHTAAVRDV FNP F GPP +E E S L +LASASTDLT+RIWDLSFNPR+ R+ L+GH+GVV CRF PSG RLA VL +EYRE L +PK+VL QC +PCP +AVS GFSL+VT+LNDSGKD RTEEYYRGCKLV+RAR L +FTGL+VA VSAEGLW GF +F + T V ++ +L RETVW TLRE PPP+PPAA+ +T KPRKR FDTVART +FA + K G+W A MMLS A+L F K+K GA++V D+I+K LGRN+ V N G +H + S + G G GAR+G G ++ S XXXXXXXX G K GR R + S G EE +R EK+V AEL L RL+AAGV ++KE + L+LAKA+KR R K Q+KGLLD+AGITVKDP+ LKVLVWDG FGADV E+RM LPE YP + TPYD+NED AR + +A A G+ AA A++EEM+AE + D ++ +A+L+R++ LR+ TRR
Sbjct: 150 EQEREDRAAAANKLKESEERRLACEEEGLTFNHGVVVCHRRWRASSALATVLPAHPCPVHAMRQSSNGRWILSGGDDLTVRLWDTEAFARKLSDPKNEKRAAKAAARAGAVAADLALGWECARELVGHTAAVRDVEFNPLFGGPPEDQEDAQEEGEGGPGSEGAPVRLACVLASASTDLTVRIWDLSFNPRVARFALKGHKGVVSACRFAPSGDRLASCSADGTIRLWNVLNGTNVFCYEXXXXXXXXXXXXXXXXXXXXXXDIGERAIRVWFADMPLYDRDPVQFGLRLRWTRSGLIKRVRANTESSAMGFFLSRQEDRESRESSDESEGEKEYRELLKIPKTVLTQCDASPCPTQAVSNGFSLTVTILNDSGKDTRTEEYYRGCKLVLRARALKKFTGLYVAGVSAEGLWEGFEAIFRFPTIVASKSVLGRETVWVTLRERPPPTPPAAIFAATRLKPRKRLFDTVARTGVFAKALKAGDWAEATMMLSVAAKLQFSKVKATGATEVADEIRKVLGRNIAVHNARSVGVAWTSVCVSHEPPDXXXXXXXXXXXXXXXXXXXXXXGGKKHPNSKAAPGTTAVSGKGTTPEVTSPGSPGSVGTAAATVVTGARAGATGKEKSKPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKTGRLGGEDRDTGESGGSGREKGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATDPSSCDEETTAIRDSVEKEVRAELANLNRLRAAGVASWKELGHAMGLLSLAKARKR-DKVRAKGQSKGLLDAAGITVKDPKVDLKVLVWDGFFGADVKEMRMQLPELYPSTSTPYDQNEDFAARTLGEAIAVGDRAAPALIEEMRAEKKKKVDPAGKMVNAVLERDQQLRRVGTRR 1056
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: A0A836CAF5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF5_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.980e-30 Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 3
Query: 3069 IISCGCDGTVRRWVITPNVPAPPPRPFVTYKTRTWVMLNWRTAAGSNEEVTAYVISWRL-GRKGKFD--QELTVPGDQLRRDVQDLLPGSLYFFRVAAVNRMGQGPWSETSDMIDTDMDTPLPLGRPLTEGFLPTSITISFFAPRPTLPKMKIQHFIVQAKGGGLDFDEGKKWEFSWEESLKGGRTL 3620
++SCG +G VR W ++P+VP+ P RP+VT+ + L W A +TA++I R G G D E+T PGD RR++ LLPG+++ FR+AAVN +G+G WSE S+ + TD+ P P+ RP ++T++F AP PTLP+M+I FI++A G G K +W+E+L G+
Sbjct: 1380 LVSCGGEGEVRLWDLSPDVPSKPSRPWVTFAGADSITLVWHPPAAGAAALTAHIIGIRAAGAAGAHDTTHEVTAPGDATRREIPALLPGTVHTFRIAAVNHVGRGEWSEESEAVATDVVVPPPVERPRAAHVTANAVTVTFLAPAPTLPQMQIHAFILRAVGHG-----DIKLSITWDEALAAGQAF 1561
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: A0A8J2SIV4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIV4_9STRA) HSP 1 Score: 132 bits (332), Expect = 2.680e-27 Identity = 103/355 (29.01%), Postives = 143/355 (40.28%), Query Frame = 3
Query: 2580 SPAEYNLRRRRGGLGELPGGAPLVETRRVGDWEKE----LAKETGGLLRQFKTRFGSLLCHQDTINAISFSPDGRRLASASSDGTIKLWDPAVGKQIGLLGKCGEHEGLPVWDVSWSGDSVFLVSCGADRSVVVWNSAATENPLVRRFLGHTDHVKRCAFVGSRGEAIISCGCDGTVRRWVITPNVPAPPPRPFVTYKTRTWVMLNWRTAAGSNEEVTAYVISWRLGRKGKFDQELTVPGDQLRRDVQDLLPGSLYFFRVAAVNRMGQGPWSETSDMIDTDMDTPLPLGRPLT--EGFLPTSITISFFAPRPTLPKMKIQHFIVQAKGGGLDFDEGKKWE--FSWEESLKGGRTL 3620
S E L RRR LPG +++ + ++ LA+ GG LR F G H T+N + +S D +R+AS S+D T++LW P G+ + L G + V S T++ W +TP P PP RP V+ + + WR N+++ AY I WR+G + F E TV G ++ V L PG Y FR+ AVNRMGQG WSE S T + P PL +P+ F P I + AP T+ I F VQ G G F +E +W+E GR L
Sbjct: 915 SKNEKPLLRRRNSFPALPGLTAKPKSKLLDRKDETRFAALARVVGGCLRTFWASNGDFHSHHHTVNQVVWSLDEKRVASCSNDKTVRLWAPQTGQCVRTL--VGHDDA-----VMGCAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLKSWFLTPQPPDPPARPAVSDAGQRAAHVAWRAPPAYNDDIVAYKIQWRVGLRVSFKNETTVDGSTFKKQVDGLRPGQNYQFRICAVNRMGQGDWSEPSAQHVTQVGIPEPLEQPVVIRSWFRPRRIVFCWHAPLATVEGTAIHRFRVQCAGEGSAFATRPDFEKFITWKE----GRAL 1258
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: A0A7S0DRY6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DRY6_9EUKA) HSP 1 Score: 81.6 bits (200), Expect = 8.500e-13 Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 3
Query: 2748 HQDTINAISFSPDGRRLASASSDGTIKLWDPAVGKQIGLLGKCGEHEGLPVWDVSWSGDSVFLVSCGADRSVVVWNSAATENPLVRRFLGHTDHVKRCAFVGSRGEAIISCGCDGTVRRWVIT 3116
H I+++ FSPDG+ LASAS DGTI+LW+P GK + + G+ D+SW+ S L S G D ++VVW+ + R +GH+ HV F + I+S D +R W T
Sbjct: 24 HDKVISSLKFSPDGKYLASASGDGTIRLWNPFEGKNLIKILDGAHTSGIN--DISWNDQSRLLCSAGDDNNIVVWD--IQKGVPARTLVGHSKHVFCVKFSRNPSNKIVSGDYDCEIRIWSST 142
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: A0A1I7CHX0_9MICC (WD domain-containing protein, G-beta repeat-containing protein n=1 Tax=Arthrobacter sp. ov118 TaxID=1761747 RepID=A0A1I7CHX0_9MICC) HSP 1 Score: 72.8 bits (177), Expect = 2.840e-10 Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 3
Query: 2742 LCHQDTINAISFSPDGRRLASASSDGTIKLWDPAVGKQIGLLGKCGEHEGLPVWDVSWSGDSVFLVSCGADRSVVVWNSA 2981
L H D +N+I+F PDG +ASAS+DGT+++W+PA G+ +G L H+G PV+ V++S D L S G+D +V++W++A
Sbjct: 38 LNHLDAVNSIAFGPDGS-IASASADGTVRIWNPASGRSVGPL---TGHQG-PVYGVAFSPDGRVLASGGSDNNVLLWDAA 112
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: A0A066VSA6_TILAU (Putative RSA4-WD-repeat protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VSA6_TILAU) HSP 1 Score: 74.3 bits (181), Expect = 1.020e-9 Identity = 47/130 (36.15%), Postives = 65/130 (50.00%), Query Frame = 3
Query: 2748 HQDTINAISFSPDGRRLASASSDGTIKLWDPAVGKQIGLLGKCGE----------HEGLPVWDVSWSGDSVFLVSCGADRSVVVWNSAATENPLVRRFLGHTDHVKRCAFVGSRGEAIISCGCDGTVRRW 3107
HQ +N +SFSPDGR +ASAS D +IK+WD G +G G H G PV+ ++WS DS LVS D ++ +W+ + + L GH D V FV + + S G D V+ W
Sbjct: 537 HQKVVNHVSFSPDGRLIASASFDSSIKVWDARSGSSVGTGSGAGAGGKFICNLRAHVG-PVYRLAWSSDSRMLVSASKDSTLKLWDMRSFK--LKVDLPGHEDEVYCVDFVADK---VASGGRDRVVKIW 660
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: UPI0012FBE4DF (hypothetical protein n=1 Tax=Zavarzinella formosa TaxID=360055 RepID=UPI0012FBE4DF) HSP 1 Score: 72.8 bits (177), Expect = 3.570e-9 Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 3
Query: 2754 DTINAISFSPDGRRLASASSDGTIKLWDPAVGKQ---IGLLGKCGEHEGLP----VWDVSWSGDSVFLVSCGADRSVVVWNSAATENPLVRRFLGHTDHVKRCAFVGSRGEAIISCGCDGTVRRWVITPNVPAPPPR 3143
+T+ A++FSPDGRRLA+A+ DG ++L DP G + ++ + G + +S D +L+ G D SV +WN A + L RF GH V +F G+ +S G DG +W + P P PR
Sbjct: 532 NTVTALTFSPDGRRLAAATGDGRVRLCDPTTGVEQAVFQIIAVPAMNRGFRYPHGAGSLGFSADGKWLLIGGPDGSVRLWNVDARQEAL--RFTGHLRRVTLVSF-GTGRRTALSVGDDGIAYQWEMRPAAGPPGPR 665
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: A0A674CKQ6_SALTR (SEH1 like nucleoporin n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674CKQ6_SALTR) HSP 1 Score: 67.4 bits (163), Expect = 7.930e-9 Identity = 41/133 (30.83%), Postives = 62/133 (46.62%), Query Frame = 3
Query: 2748 HQDTINAISFSPDGRRLASASSDGTIKLWDPAVGKQIGLLGKCGEHEGLPVWDVSWSGDSV--FLVSCGADRSVVVWNSAATENPLVRRFLGHTDHVKRCAFVGSR-------------GEAIISCGCDGTVR 3101
H+D I+ +S+ GRR+A+ SSD ++K+WD + + H G VW V+W+ L SC DR+ VW E+ +R GH+ +KR V SR G + +C DG +R
Sbjct: 11 HKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGS-VWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQR--GHSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVMR 140
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: A0A0C9TA81_PAXIN (Uncharacterized protein n=1 Tax=Paxillus involutus ATCC 200175 TaxID=664439 RepID=A0A0C9TA81_PAXIN) HSP 1 Score: 70.9 bits (172), Expect = 9.330e-9 Identity = 49/176 (27.84%), Postives = 77/176 (43.75%), Query Frame = 3
Query: 2709 LRQFKTRFGSLLC----HQDTINAISFSPDGRRLASASSDGTIKLWDPAVGKQIGLLGKC-------------------------------GEHEGLPVWDVSW------SGDSVFLVSCGADRSVVVWNSAATENPLVRRFLGHTDHVKRCAFVGSRGEAIISCGCDGTVRRWVI 3113
+++F + GSLL H +++I+ SP+G+ +ASAS D T++LWD + L G G +W+V W SGD ++ + G + ++ +WN+ E P + F GHT V AF+ EAI S DG+ RRW +
Sbjct: 218 IKRFSSSTGSLLAAWKAHTGVVHSIAVSPNGKFVASASLDKTVRLWDMTTSPPLVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVEDGRELGRAMWEVDWVLAVAASGDGRWVATGGKENNITIWNTTTYEKPPLVLF-GHTGCVWSVAFLPDGKEAI-SSSADGSARRWRV 391
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Match: A0A563VK23_9CYAN (Uncharacterized protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VK23_9CYAN) HSP 1 Score: 70.9 bits (172), Expect = 1.810e-8 Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 3
Query: 2748 HQDTINAISFSPDGRRLASASSDGTIKLWDPAVGKQIGLLGKCGEHEGLPVWDVS-------WSGDSVFLVSCGADRSVVVWNSAATENPLVRRFLGHTDHVKRCAFVGSRGEAIISCGCDGTVRRW 3107
H+ T+N I +SPDG+ LASAS+D TIKLWD G+ I + G G+ S + S L+S D V +WN + GHTD +K A + S + I S G D T++ W
Sbjct: 1498 HKSTVNQIKYSPDGKILASASADNTIKLWDTEKGQLITTIE--GHQAGINSITFSLTPLGSPYKEGSQLLISGDEDGIVKLWNLENNTAKPIADLTGHTDSLKTVA-ISSDNKYIASAGYDKTIKIW 1621 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2481.6738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2481.6738.1 >prot_H-paniculata_contig2481.6738.1 ID=prot_H-paniculata_contig2481.6738.1|Name=mRNA_H-paniculata_contig2481.6738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=699bp MSQSADTRWVLSGGDDRTVRLWDTEAFERKLTCSDETRVARAAGRAGAIAback to top mRNA from alignment at H-paniculata_contig2481:4536..19524- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2481.6738.1 ID=mRNA_H-paniculata_contig2481.6738.1|Name=mRNA_H-paniculata_contig2481.6738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14989bp|location=Sequence derived from alignment at H-paniculata_contig2481:4536..19524- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2481:4536..19524- >mRNA_H-paniculata_contig2481.6738.1 ID=mRNA_H-paniculata_contig2481.6738.1|Name=mRNA_H-paniculata_contig2481.6738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4194bp|location=Sequence derived from alignment at H-paniculata_contig2481:4536..19524- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |