mRNA_H-paniculata_contig24769.6721.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24769.6721.1
Unique NamemRNA_H-paniculata_contig24769.6721.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24769.6721.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.280e-28
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:   10 ACATTTISLVLITIASALAGALFAGVMVCIFSKCYATRYFLHHSWIQLIVDFEPTHDLHTSYGYMVLVCGVLHALAHIVRYIVDNDADLLYTETVNRSGVVATILMVPSVVPM 348
            AC T+   + LIT+A   AGALF  ++ C+ +KCYATRY LHHSW+ LI+DFEP+H LHT +G ++L+C V+H+  HI    +   AD  +   +NRSGVVA +L++P  +PM
Sbjct:  252 ACVTSGPEMALITVARLTAGALFPSIIFCVLAKCYATRYLLHHSWLTLIIDFEPSHKLHTYFGVLILLCSVVHSACHIAVGALQRRADYAFENEINRSGVVAMLLLLPIALPM 364
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BLAST of mRNA_H-paniculata_contig24769.6721.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.850e-27
Identity = 52/113 (46.02%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:   10 ACATTTISLVLITIASALAGALFAGVMVCIFSKCYATRYFLHHSWIQLIVDFEPTHDLHTSYGYMVLVCGVLHALAHIVRYIVDNDADLLYTETVNRSGVVATILMVPSVVPM 348
            AC ++   + LI++A   AGALF  +  C+ SKCYATRY LHHSW+  I+DFEP+H LHT +G ++L+C V+H++ HI    +   AD  + + +NRSG+VA +L++P  +PM
Sbjct:  272 ACVSSGPEMALISVARLTAGALFPSIFFCVLSKCYATRYLLHHSWLTFIIDFEPSHKLHTYFGVLILLCSVVHSVCHIAVGALQRRADHAFKDEINRSGLVAVLLLLPIALPM 384
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BLAST of mRNA_H-paniculata_contig24769.6721.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.300e-26
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1 
Query:   10 ACATTTISLVLITIASALAGALFAGVMVCIFSKCYATRYFLHHSWIQLIVDFEPTHDLHTSYGYMVLVCGVLHALAHIVRYIVDNDADLLYTETVNRSGVVATILMVPSVVPM 348
            AC T+ +S VL+T++   AGAL   +  CI SKCYATRYFLHHSW+ L+V FEP H+LHT +G + L+ GVLH LAH+ R + +   +  +  ++ RSG +A +L+ P  VPM
Sbjct:   52 ACVTSALSKVLLTVSRMSAGALLPSMACCILSKCYATRYFLHHSWLALVVSFEPAHELHTYFGSLTLLFGVLHGLAHLAREVNEGHWNC-FASSMGRSGFIALVLLFPIAVPM 163
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BLAST of mRNA_H-paniculata_contig24769.6721.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.680e-26
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1 
Query:   10 ACATTTISLVLITIASALAGALFAGVMVCIFSKCYATRYFLHHSWIQLIVDFEPTHDLHTSYGYMVLVCGVLHALAHIVRYIVDNDADLLYTETVNRSGVVATILMVPSVVPM 348
            AC T+ +S VL+T++   AGAL   +  CI SKCYATRYFLHHSW+ ++V FEP H+LHT +G + L+ GVLH LAH+ R + + + +  +   + RSG VA +L+ P  VPM
Sbjct:  261 ACVTSALSKVLLTVSRMSAGALLPSMACCILSKCYATRYFLHHSWLAVVVSFEPAHELHTFFGSLTLLFGVLHGLAHLAREVNEGNWNF-FASPMGRSGFVALVLLFPIAVPM 372
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BLAST of mRNA_H-paniculata_contig24769.6721.1 vs. uniprot
Match: D8LF83_ECTSI (Putative respiratory burst oxidase homolog protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF83_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.470e-22
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:   13 CATTTISLVLITIASALAGALFAGVMVCIFSKCYATRYFLHHSWIQLIVDFEPTHDLHTSYGYMVLVCGVLHALAHIVRYIVDNDADLLYTETVNRSGVVATILMVPSVVPM 348
            CATT    V++T +  LAG L+A + V + SKCYA+R +LHHSW+  ++DFEP HDLHT +G++ LV G  H + H+ R    ++  L+Y     RSG+ A +L++P V+PM
Sbjct:  156 CATTLPEKVMLTGSRFLAGLLYASLSVSVVSKCYASRAYLHHSWLGTVLDFEPAHDLHTYFGFLTLVAGWAHGVLHLARVSYADEKFLMYETHAFRSGIFAILLLLPIVLPM 267
[Close]
BLAST of mRNA_H-paniculata_contig24769.6721.1 vs. uniprot
Match: D7G8D1_ECTSI (Putative respiratory burst oxidase homolog protein C-ter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.530e-21
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   40 LITIASALAGALFAGVMVCIFSKCYATRYFLHHSWIQLIVDFEPTHDLHTSYGYMVLVCGVLHALAHIVRYIVDNDADLLYTETVNRSGVVATILMVPSVVPMA 351
            L+++A   AGAL   + VCI SKCYATRY LH+SW+  IVDFEP+H  H  +G + ++C  +H+  H+V  I+      +  + +N SG+VA +L++P  +PM+
Sbjct:    3 LMSVARLTAGALIPSITVCIVSKCYATRYVLHYSWLAHIVDFEPSHTPHKYFGILAMLCSAIHSACHVVIGILQRRPHHVVKDEMNLSGLVAFLLVLPVALPMS 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24769.6721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JHI2_9PHAE1.280e-2848.67FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C8_ECTSI2.850e-2746.02Putative respiratory burst oxidase protein n=1 Tax... [more]
D7G8C4_ECTSI4.300e-2648.67Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JEC1_9PHAE4.680e-2648.67FAD_binding_8 domain-containing protein n=1 Tax=Ec... [more]
D8LF83_ECTSI1.470e-2244.64Putative respiratory burst oxidase homolog protein... [more]
D7G8D1_ECTSI1.530e-2142.31Putative respiratory burst oxidase homolog protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24769contigH-paniculata_contig24769:148..1687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue2.8e-23
Seed eggNOG ortholog2880.D7G8C8
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929722.0618458-CDS-H-paniculata_contig24769:147..3371622929722.0618458-CDS-H-paniculata_contig24769:147..337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24769 148..337 +
1691480982.625178-CDS-H-paniculata_contig24769:147..3371691480982.625178-CDS-H-paniculata_contig24769:147..337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24769 148..337 +
1622929722.0798733-CDS-H-paniculata_contig24769:1526..16871622929722.0798733-CDS-H-paniculata_contig24769:1526..1687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24769 1527..1687 +
1691480982.6371295-CDS-H-paniculata_contig24769:1526..16871691480982.6371295-CDS-H-paniculata_contig24769:1526..1687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24769 1527..1687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24769.6721.1prot_H-paniculata_contig24769.6721.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24769 148..1687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24769.6721.1

>prot_H-paniculata_contig24769.6721.1 ID=prot_H-paniculata_contig24769.6721.1|Name=mRNA_H-paniculata_contig24769.6721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
SPSACATTTISLVLITIASALAGALFAGVMVCIFSKCYATRYFLHHSWIQ
LIVDFEPTHDLHTSYGYMVLVCGVLHALAHIVRYIVDNDADLLYTETVNR
SGVVATILMVPSVVPMA
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mRNA from alignment at H-paniculata_contig24769:148..1687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24769.6721.1 ID=mRNA_H-paniculata_contig24769.6721.1|Name=mRNA_H-paniculata_contig24769.6721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1540bp|location=Sequence derived from alignment at H-paniculata_contig24769:148..1687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCCTAGCGCTTGCGCGACCACGACCATTAGCCTGGTGCTGATTACGAT
TGCTTCTGCCCTCGCCGGAGCTCTATTCGCTGGCGTCATGGTGTGCATCT
TCTCCAAGTGCTACGCCACGCGGTATTTCTTGCACCACTCGTGGATCCAG
CTCATCGTCGACTTCGAGCCCACTCACGACCTTCACACATGTGAGAACAG
CAAATGTATGTAGTGCGGACCGCTTCTTCTTTATGTGCCCAAATTTTAGT
CCCACCCAACCTGCCGCAGTGGCCGTTATTGTTGGCGTCGACTCATTGGT
TGGTTAGTTATGTTTGTGGCGAACGGCGTCGTCAACGAGCGTGTCTTACT
TCTAAACGAGTTCCTTGAAAAATCATCCAGTTAACCTCTGATGAACCAGA
ATTGATTCCCAGTCATCCTTCAAGTAATGTATTACCTACTTTGTATTTAT
AATATATTTAGTATTGCGGAGGAACATAATAATCAAGAGCATTTTTTGTG
GTTTTTCGGAAACTGATTTTTGGTTTTTCCCCGTTGGTCTACAGATGCAC
ACTCTAAAAACACTTGGCACAGGCATGCAGCAACCGATTGGTGAATATCG
TATTGCATGAGTTACACCTCAAAATGTCAATTTTCTAATTCGCTCCTGCT
CATTATGTTCCTCCGTAATGGTACAAAATACTGAAAATCGTTTGTTGATG
GATCTCACCTGTTGGTGTCACGTTTTGCCAGATGTAGTATACCCGTATTC
AAGTGGCACACAAATTCAATGGAAACATCTGGAAGGAACAGCGCGTTCAA
CATGTGAACCAGCTTCTCCGTTAGCCTTGGTTTGGCAAGATAACGAGGCT
TATGGCATTCCTCTTTCGTCGAGATATATTCAATCGATTTCCACAATTTG
TTGCTATTCGTCTCTCCACTGTTGGGGACCGGTTTGGTCGGGAAAATGCA
AAATTGATCGTTTCGGCTTTGGAAGTACTATAATAGCAAGTGTACTGTCT
GTCGAGGTTGGTTCATTTATTTTCAAGTATCGAAGTCAACCATTGATTTT
TGCGCCACCCATCTACAAACTGCACGCCGCCTCGTCACCTATAGTAGGTC
TTTTGTCGTGTGTGCGAAAAGATCATAACATGAGTACCGTGTAGACATAC
TTTGGTAAAGTACTTCAAGTATGGAAGAATTGGTAAAGGTTTTTGCCTCA
GCCTTCAGGGGGTTAAAACCCCCCCCAAAAACAGGAGTATGGTAAATTAA
AGCATTTGATATTCTTTTTACTGACCCCCCCCTCCCCCCGCGCGCCTTCC
CCTCCACCTCTCTATTTATTGTATTTTTGTGCGGTTCGTTTCTTCTTTTT
TCTCTTCACCTGTACATGTAATCATTCAGCATACGGCTATATGGTCCTGG
TGTGTGGTGTGTTGCACGCACTTGCACACATCGTGAGGTACATCGTAGAC
AACGATGCCGACCTCCTCTACACAGAGACGGTCAATCGCTCGGGAGTTGT
AGCCACGATATTGATGGTGCCAAGTGTCGTACCGATGGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig24769:148..1687+

>mRNA_H-paniculata_contig24769.6721.1 ID=mRNA_H-paniculata_contig24769.6721.1|Name=mRNA_H-paniculata_contig24769.6721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig24769:148..1687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCCTAGCGCTTGCGCGACCACGACCATTAGCCTGGTGCTGATTACGAT
TGCTTCTGCCCTCGCCGGAGCTCTATTCGCTGGCGTCATGGTGTGCATCT
TCTCCAAGTGCTACGCCACGCGGTATTTCTTGCACCACTCGTGGATCCAG
CTCATCGTCGACTTCGAGCCCACTCACGACCTTCACACATAGTCCTAGCG
CTTGCGCGACCACGACCATTAGCCTGGTGCTGATTACGATTGCTTCTGCC
CTCGCCGGAGCTCTATTCGCTGGCGTCATGGTGTGCATCTTCTCCAAGTG
CTACGCCACGCGGTATTTCTTGCACCACTCGTGGATCCAGCTCATCGTCG
ACTTCGAGCCCACTCACGACCTTCACACATCATACGGCTATATGGTCCTG
GTGTGTGGTGTGTTGCACGCACTTGCACACATCGTGAGGTACATCGTAGA
CAACGATGCCGACCTCCTCTACACAGAGACGGTCAATCGCTCGGGAGTTG
TAGCCACGATATTGATGGTGCCAAGTGTCGTACCGATGGCCCATACGGCT
ATATGGTCCTGGTGTGTGGTGTGTTGCACGCACTTGCACACATCGTGAGG
TACATCGTAGACAACGATGCCGACCTCCTCTACACAGAGACGGTCAATCG
CTCGGGAGTTGTAGCCACGATATTGATGGTGCCAAGTGTCGTACCGATGG
CC
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