mRNA_H-paniculata_contig2476.6719.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2476.6719.1
Unique NamemRNA_H-paniculata_contig2476.6719.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A6H5JJZ4_9PHAE (Metallophos domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJZ4_9PHAE)

HSP 1 Score: 464 bits (1194), Expect = 5.840e-155
Identity = 231/324 (71.30%), Postives = 258/324 (79.63%), Query Frame = 2 
Query:   86 MRGSRSRS-FDRLGFV-EPRSRSSGFDH-FAPSSAEPDYSSTRGSHAKSGSSSAKKRPRSRERRRAENQVASSDGSTIFALRAPDVVCCGHKPRGRRLRVVCLSDTHGKHDAIKSKIPDGDILIHCGDFSTKLSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRIRNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAKDNPCPVCRETHRSYAHWGSWSLTDRVKQLRPKVHVFGHVHNSHGIVRKGETLYINAAQDENPQPIFFDIWV 1048
            MRGSR+R  FDR     + RSRS+ F+H F    A P  + +RG   +          RS  R  AE    +SDGSTIFALRAPD+VCCG K RGR+LRVVCLSDTHGKH A++  IPDGDILIHCGDFSTKL QRDFE A EDFDRFLGSL HPHK++IAGNHEIAFN+Y+REQIQRRI NA YLEDS  TV GL+FYGTPWTNSSHMGFSCRG +LE  W+ IP GVDILL+HMPP+N LDLAFD GS AK +PCPVC ETHRS+AHWGSWSLTDRV +L+PKVHVFGHVHNSHGI+RK ET+YINAAQDEN QPIFFDIWV
Sbjct:    1 MRGSRNRGGFDRSADAGDIRSRSTSFEHHFRSHVASPTSTPSRGGRRRLEG-------RSVPRAGAEEPAVTSDGSTIFALRAPDIVCCGDKSRGRKLRVVCLSDTHGKHHAMRHTIPDGDILIHCGDFSTKLQQRDFEAAVEDFDRFLGSLGHPHKLVIAGNHEIAFNNYTREQIQRRISNATYLEDSETTVEGLKFYGTPWTNSSHMGFSCRGAQLEGVWSAIPEGVDILLTHMPPFNRLDLAFDRGSNAKADPCPVCGETHRSFAHWGSWSLTDRVAELKPKVHVFGHVHNSHGIIRKDETVYINAAQDENQQPIFFDIWV 317
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: D7FHZ7_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ7_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 1.070e-117
Identity = 167/208 (80.29%), Postives = 183/208 (87.98%), Query Frame = 2 
Query:  425 IPDGDILIHCGDFSTKLSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRIRNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAKDNPCPVCRETHRSYAHWGSWSLTDRVKQLRPKVHVFGHVHNSHGIVRKGETLYINAAQDENPQPIFFDIWV 1048
            + DGDILIHCGDFSTKL QRDFE A EDFDRFLGSL H HK++IAGNHEIAFN Y+REQIQRRI NA YLEDS  TV GL+FYGTPWTNSSHMGFSCRG +LE  W+ IP GVDILL+HMPP+N LDLAFD GS AK +PCPVC ETHRS+AHWGSWSLTDRV +L+PKVHVFGHVHNSHGI+RK +T+YINAAQDEN QPIFFDIWV
Sbjct:   14 LQDGDILIHCGDFSTKLQQRDFEAAVEDFDRFLGSLGHRHKLVIAGNHEIAFNHYTREQIQRRISNATYLEDSETTVEGLKFYGTPWTNSSHMGFSCRGAQLEGVWSAIPEGVDILLTHMPPFNRLDLAFDRGSHAKADPCPVCGETHRSFAHWGSWSLTDRVAELKPKVHVFGHVHNSHGIIRKDDTVYINAAQDENQQPIFFDIWV 221
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A7S4MMV8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMV8_9EUKA)

HSP 1 Score: 261 bits (666), Expect = 1.040e-77
Identity = 117/226 (51.77%), Postives = 160/226 (70.80%), Query Frame = 2 
Query:  365 RLRVVCLSDTHGKHDAIKSKIPDGDILIHCGDFSTKLSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRIRNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAKDNP-CPVCRETHRSYAHWGSWSLTDRVKQLRPKVHVFGHVHNSHGIVRKGETLYINAAQDENPQPIFFD 1039
            R+R+V +SDTH  H+   S IPDGDILIH GDF+ ++    FE   EDF+ FLG+LPH HK+ +AGNHEIA N+Y++++IQ+ + N +YL+DS   +MG++FYG+PWT SS MGFSC   E++ KW KIP   DIL++HMPP+N+LDLAF   S A DN  C  C ++H  Y HWGS SL +RV+ ++PK H+FGHVH+  G  R G+T ++N+A D      +FD
Sbjct:   19 RVRIVHISDTHKSHNRYLSSIPDGDILIHSGDFAQRMKTEGFEEKMEDFNNFLGALPHKHKIFVAGNHEIALNNYTKKEIQKMLPNCVYLQDSSVKLMGIKFYGSPWTTSSRMGFSCPRAEIKKKWKKIPRSTDILITHMPPFNILDLAFS--SKALDNSTCSTCGKSHERYRHWGSNSLLERVETVKPKFHLFGHVHDDPGFKRVGDTTFVNSAVDLKGIGHYFD 242
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A817R4F3_9BILA (Hypothetical protein n=6 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817R4F3_9BILA)

HSP 1 Score: 198 bits (504), Expect = 2.380e-54
Identity = 100/230 (43.48%), Postives = 140/230 (60.87%), Query Frame = 2 
Query:  356 RGRRLRVVCLSDTHGKHDAIKSKIPDGDILIHCGDFSTK-----LSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRI-RNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAKDNPCPVCRET-HRSYAHWGSWSLTDRVKQ-LRPKVHVFGHVHNSHGIV---RKGETLYINAAQD 1012
            R + + VV +SDTH  H+ I   IPDGDI +HCGDF+ K     L+      +  DF+++LG L H HK++I GNHEI F  YS+E+IQ  +  N +YL+D    V G+  YG+PW+   H           +KW  IPS +DIL++H+PP  +LDLAF P   A   PC +C +T H SY HWGS SL   +++ ++P++H FGHVH+ +G      + ETL+INAA D
Sbjct:   21 RYKSISVVIVSDTHKNHEVIN--IPDGDIFLHCGDFTNKGDWRSLTNDQIPQSIIDFNQWLGRLKHKHKIVICGNHEIGFQKYSKEEIQSNLLTNCIYLKDELIQVEGITIYGSPWSFKEHY---------RTKWLSIPSNIDILMTHIPPKFILDLAFQPKKVASTEPCSMCNDTVHGSYGHWGSKSLIKEIRERIQPRIHCFGHVHDDNGYKYDQHESETLFINAATD 239
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A814A372_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A814A372_9BILA)

HSP 1 Score: 194 bits (492), Expect = 1.140e-52
Identity = 100/230 (43.48%), Postives = 140/230 (60.87%), Query Frame = 2 
Query:  356 RGRRLRVVCLSDTHGKHDAIKSKIPDGDILIHCGDFSTK-----LSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRI-RNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAKDNPCPVCRET-HRSYAHWGSWSLTDRVKQ-LRPKVHVFGHVHNSHGIV---RKGETLYINAAQD 1012
            R + + VV +SDTH  H+ I   IPDGDI +HCGDF+ +     L+      +  DF+++LG L H HK++I GNHEI F  +S E+IQ ++  N++YL+D    V G+  YG+ W    H    CR     +KW+ IPS +DIL++HMPP  +LDLAF P   A   PC +C  T H SY HWGS SL   ++Q ++P++H FGHVH+ +G      +  TL+INAA D
Sbjct:   21 RYKTISVVIVSDTHKNHEKIN--IPDGDIFLHCGDFTNRGDWLNLTNDQIPQSVIDFNQWLGRLTHKHKIVICGNHEIGFEKFSTEEIQSKLLSNSIYLKDDLIQVEGITIYGSSW----HFNERCR-----AKWSSIPSDIDILMTHMPPKFILDLAFQPRKVASTEPCSICNNTVHGSYGHWGSKSLIKEIRQRIKPRIHCFGHVHDDNGYKYDQHENGTLFINAAAD 239
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A814F8R4_9BILA (Hypothetical protein n=7 Tax=Adineta steineri TaxID=433720 RepID=A0A814F8R4_9BILA)

HSP 1 Score: 190 bits (482), Expect = 2.510e-51
Identity = 97/240 (40.42%), Postives = 142/240 (59.17%), Query Frame = 2 
Query:  362 RRLRVVCLSDTHGKHDAIKSKIPDGDILIHCGDFSTK-----LSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRR-IRNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAKDNPCPVCRET-HRSYAHWGSWSLTDRVKQ-LRPKVHVFGHVHNSHGIVRKGE---TLYINAAQDENPQPIFFDIWV 1048
            +++ +V +SDTH  H+  K  IPDGDI +HCGDF+ +     LS      +  DF+++LG L HPHK++I GNHE+ F   S E+IQ + + N  YL+D    +  +  YG PWT + H           +KW  IPS +DIL++H+PP  +LDLA+ P + +   PC +C  T H  Y HWGS SL   ++Q ++P+VH FGHVH+  G     +   TL+INAA D + +P  F+ +V
Sbjct:   23 KKVSIVVVSDTHKNHE--KLSIPDGDIFLHCGDFTNRHDWLNLSPDQIPQSVIDFNQWLGKLSHPHKLVICGNHELGFGKLSHEEIQSKYLTNCKYLKDELIQIEDISIYGCPWTFTEHY---------RTKWPSIPSHIDILMTHVPPQFILDLAYQPKALSSTEPCSMCNNTVHGCYGHWGSASLIKEIRQRIQPRVHCFGHVHDDPGHKYDQDDTGTLFINAATDLSNRPFKFNFYV 251
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A1S3JYP0_LINUN (UPF0046 protein C25E10.12-like isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JYP0_LINUN)

HSP 1 Score: 183 bits (465), Expect = 1.160e-48
Identity = 92/250 (36.80%), Postives = 142/250 (56.80%), Query Frame = 2 
Query:  362 RRLRVVCLSDTHGKHDAIKSKIPDGDILIHCGDFSTK------LSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRIRNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTE----LESKWAKIPSGVDILLSHMPPYNVLDLAF---DPGSTAKDNPCPVC--RETHRSYAHWGSWSLTDRVKQLRPKVHVFGHVHNSHGIVR-------KGETLYINAAQDENPQPIFFDIW 1045
            R LR+V +SDTH KH      IP GD+L+H GDFS          + D+    +  D+F GSLPH HK+ +AGNH++    ++ ++I+  ++N  YL+D    + GL+FYG+PWT S     +   TE    L+SKW+K+P  +D+L++HMPP  + D  +       T   +PC  C  R    S  ++GS  L D +K++RPK+HVFGHVH ++G+ R          T   NA+ + +P P+ +D++
Sbjct:   30 RVLRIVHISDTHNKHREYAPHIPGGDVLVHSGDFSNFNFFRKWFKEIDYRYELKALDKFFGSLPHKHKIFVAGNHDLNLEKHTSQEIRNNVKNFTYLQDDWIEIEGLKFYGSPWTASRSSSRADAFTEPIEELDSKWSKLPDDIDVLVTHMPPLGIRDKEYIYRGRFKTMSFDPCKFCESRAHPLSVHYFGSKGLLDALKRIRPKIHVFGHVHGTNGVTRLKHNQDGTANTFCSNASMEGHPTPVVYDLF 279
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A821PJ98_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821PJ98_9BILA)

HSP 1 Score: 181 bits (459), Expect = 3.910e-48
Identity = 98/256 (38.28%), Postives = 144/256 (56.25%), Query Frame = 2 
Query:  356 RGRRLRVVCLSDTHGKHDAIKSKIPDGDILIHCGDFSTKLSQRDFETATED--------FDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRI-RNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAKDNPCPVCRET-HRSYAHWGSWSLTDRVKQ-LRPKVHVFGHVHNSHGIVRKGE---TLYINAAQDENPQPIFFDIWV*NLELVHEVDL 1081
            R + + V+  SDTH  H+  K  IPDGDI +HCGDF+ +    D++  T+D        F+ +LG L H HK++I GNHEI F ++S++ IQ ++  N +YL+D    V G+  YG PW  +             +KW+ IPS +DIL++H PP  +LDLA+ P  T    PC +C  T H SY HWGS SL   +++ ++P+VH FGHVH+  G   +     TL+INAA +   Q         + +L+  +DL
Sbjct:   21 RYKTVSVIIASDTHKNHE--KMTIPDGDIFLHCGDFTNR---HDWQNLTDDQIPQSIIDFNHWLGRLTHKHKIVICGNHEIGFRNFSKDDIQSKLLTNCIYLKDELIQVEGISIYGCPWPFNERY---------RTKWSLIPSHIDILMTHSPPQFILDLAYQPKKTPSIEPCSICNNTVHGSYGHWGSRSLIKEIRERIQPRVHCFGHVHDDSGYKYEQNGNGTLFINAAMNLTRQ---------HFKLIFYIDL 253
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A816D1C4_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A816D1C4_ADIRI)

HSP 1 Score: 181 bits (458), Expect = 6.220e-48
Identity = 95/240 (39.58%), Postives = 137/240 (57.08%), Query Frame = 2 
Query:  356 RGRRLRVVCLSDTHGKHDAIKSKIPDGDILIHCGDFSTK------LSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRI-RNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAKDNPCPVCRE-THRSYAHWGSWSLTDRV-KQLRPKVHVFGHVHNSHGIVRKGETLYINAAQDENPQPIFFDIWV 1048
            R +++ VV +SDTH  H  +   IP+GDIL+HCGDFS +        +     +  DF+++LG+LPH HK +I GNHEI F   S E IQ ++  N  YL+D    V G+  YG+PW  +             SKW+ IP  +D+L++H+PP  +LDLA+ P       PC +C +  H SY HWGS SL   V ++++P+VH FGHVH+  G   +  TL+INAA +   Q    + +V
Sbjct:   24 RYKKVSVVIVSDTHKNHRRLA--IPNGDILLHCGDFSNRHDWYNLSDENPIPKSIVDFNQWLGTLPHQHKFVIGGNHEIGFAQLSLEDIQSKLLTNCKYLQDELVEVEGITIYGSPWPFTQ---------SYRSKWSSIPDHIDVLMTHVPPQYILDLAYQPKKAPITEPCAMCDDKVHGSYGHWGSRSLKRAVLERIQPRVHCFGHVHDDPGYKYENNTLFINAAANLTHQSFKLNFYV 252
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BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Match: A0A7S3XQM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQM8_HETAK)

HSP 1 Score: 176 bits (447), Expect = 1.020e-47
Identity = 79/143 (55.24%), Postives = 100/143 (69.93%), Query Frame = 2 
Query:  380 CLSDTHGKHDAIKSKIPDGDILIHCGDFSTKLSQRDFETATEDFDRFLGSLPHPHKVIIAGNHEIAFNSYSREQIQRRIRNAMYLEDSGATVMGLRFYGTPWTNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDL 808
            C+SDTHG+H  +   IPDGDILIH GDF+ KL +RD   + E+F+ FL  LPH HK++IAGNHEIA N   RE+IQ+ + N  YL+DS   V GL+ YG+PWTNS  MGFSC G  L   W +IP   D+L++H+PP  VLDL
Sbjct:    1 CISDTHGQHSKLLPCIPDGDILIHAGDFTNKLRKRDMVKSLEEFNDFLQKLPHKHKIVIAGNHEIALNGIPREEIQKHLSNCHYLQDSSVMVDGLKIYGSPWTNSVEMGFSCSGKYLHKYWDRIPLDTDVLVTHLPPEGVLDL 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2476.6719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJZ4_9PHAE5.840e-15571.30Metallophos domain-containing protein n=1 Tax=Ecto... [more]
D7FHZ7_ECTSI1.070e-11780.29Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A7S4MMV8_9EUKA1.040e-7751.77Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A817R4F3_9BILA2.380e-5443.48Hypothetical protein n=6 Tax=Rotaria sp. Silwood2 ... [more]
A0A814A372_9BILA1.140e-5243.48Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]
A0A814F8R4_9BILA2.510e-5140.42Hypothetical protein n=7 Tax=Adineta steineri TaxI... [more]
A0A1S3JYP0_LINUN1.160e-4836.80UPF0046 protein C25E10.12-like isoform X1 n=1 Tax=... [more]
A0A821PJ98_9BILA3.910e-4838.28Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A816D1C4_ADIRI6.220e-4839.58Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A7S3XQM8_HETAK1.020e-4755.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2476contigH-paniculata_contig2476:1749..7676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.5
Seed ortholog evalue2.5e-98
Seed eggNOG ortholog2880.D7FHZ7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Calcineurin-like phosphoesterase
EggNOG OGsKOG3947@1,KOG3947@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2491
Cds size966
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.794979-UTR-H-paniculata_contig2476:1748..18331622929721.794979-UTR-H-paniculata_contig2476:1748..1833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2476 1749..1833 +
1691480982.4961753-UTR-H-paniculata_contig2476:1748..18331691480982.4961753-UTR-H-paniculata_contig2476:1748..1833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2476 1749..1833 +
1622929721.917093-UTR-H-paniculata_contig2476:6236..76761622929721.917093-UTR-H-paniculata_contig2476:6236..7676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2476 6237..7676 +
1691480982.5710812-UTR-H-paniculata_contig2476:6236..76761691480982.5710812-UTR-H-paniculata_contig2476:6236..7676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2476 6237..7676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.810316-CDS-H-paniculata_contig2476:1833..20681622929721.810316-CDS-H-paniculata_contig2476:1833..2068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 1834..2068 +
1691480982.5066977-CDS-H-paniculata_contig2476:1833..20681691480982.5066977-CDS-H-paniculata_contig2476:1833..2068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 1834..2068 +
1622929721.8237982-CDS-H-paniculata_contig2476:3382..34931622929721.8237982-CDS-H-paniculata_contig2476:3382..3493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 3383..3493 +
1691480982.515602-CDS-H-paniculata_contig2476:3382..34931691480982.515602-CDS-H-paniculata_contig2476:3382..3493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 3383..3493 +
1622929721.843135-CDS-H-paniculata_contig2476:3919..40361622929721.843135-CDS-H-paniculata_contig2476:3919..4036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 3920..4036 +
1691480982.5247185-CDS-H-paniculata_contig2476:3919..40361691480982.5247185-CDS-H-paniculata_contig2476:3919..4036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 3920..4036 +
1622929721.8605757-CDS-H-paniculata_contig2476:4267..43371622929721.8605757-CDS-H-paniculata_contig2476:4267..4337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 4268..4337 +
1691480982.533982-CDS-H-paniculata_contig2476:4267..43371691480982.533982-CDS-H-paniculata_contig2476:4267..4337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 4268..4337 +
1622929721.8726833-CDS-H-paniculata_contig2476:4996..50811622929721.8726833-CDS-H-paniculata_contig2476:4996..5081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 4997..5081 +
1691480982.5430589-CDS-H-paniculata_contig2476:4996..50811691480982.5430589-CDS-H-paniculata_contig2476:4996..5081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 4997..5081 +
1622929721.8875046-CDS-H-paniculata_contig2476:5643..58131622929721.8875046-CDS-H-paniculata_contig2476:5643..5813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 5644..5813 +
1691480982.5526714-CDS-H-paniculata_contig2476:5643..58131691480982.5526714-CDS-H-paniculata_contig2476:5643..5813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 5644..5813 +
1622929721.9027312-CDS-H-paniculata_contig2476:6058..62361622929721.9027312-CDS-H-paniculata_contig2476:6058..6236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 6059..6236 +
1691480982.562117-CDS-H-paniculata_contig2476:6058..62361691480982.562117-CDS-H-paniculata_contig2476:6058..6236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2476 6059..6236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2476.6719.1prot_H-paniculata_contig2476.6719.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2476 1834..6236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2476.6719.1

>prot_H-paniculata_contig2476.6719.1 ID=prot_H-paniculata_contig2476.6719.1|Name=mRNA_H-paniculata_contig2476.6719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=322bp
MRGSRSRSFDRLGFVEPRSRSSGFDHFAPSSAEPDYSSTRGSHAKSGSSS
AKKRPRSRERRRAENQVASSDGSTIFALRAPDVVCCGHKPRGRRLRVVCL
SDTHGKHDAIKSKIPDGDILIHCGDFSTKLSQRDFETATEDFDRFLGSLP
HPHKVIIAGNHEIAFNSYSREQIQRRIRNAMYLEDSGATVMGLRFYGTPW
TNSSHMGFSCRGTELESKWAKIPSGVDILLSHMPPYNVLDLAFDPGSTAK
DNPCPVCRETHRSYAHWGSWSLTDRVKQLRPKVHVFGHVHNSHGIVRKGE
TLYINAAQDENPQPIFFDIWV*
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mRNA from alignment at H-paniculata_contig2476:1749..7676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2476.6719.1 ID=mRNA_H-paniculata_contig2476.6719.1|Name=mRNA_H-paniculata_contig2476.6719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5928bp|location=Sequence derived from alignment at H-paniculata_contig2476:1749..7676+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAATATCGATGTCAACGTGCCCGCTTAATCCACAGTCCAAATCATTCAT
AGCTCATACGGCAATTGCAAGCGGTGACGATACCCATGAGGGGTTCCAGA
AGTCGGAGCTTCGACCGTTTGGGCTTTGTAGAACCGAGGTCACGAAGTTC
GGGTTTTGACCATTTTGCGCCTTCGAGTGCAGAGCCTGATTACTCGAGTA
CGCGAGGCAGCCATGCGAAGTCAGGAAGCTCAAGCGCCAAGAAGCGACCG
AGGTCCCGGGAGAGGCGGAGGGCGGAGAACCAAGTGGCCTCGTCTGATGG
TTCTACGATATTTGCTTTGAGTGAGTAATTGGGCGCCGTGCCGCGAACCT
CTTATTCTTGGGTGTGATGTGTGCGAAAGTGGGTGAAATAGCCTTGCGTG
TAACACTTGGCAGACTCTAAGGTAGACCATTGTGTGTAAATTGATGTGTA
CAAAAATGTGTACCGGGTGACGCCTAAGCTTGAGTAGGCGACCATAGACC
GGATGTTAACATGTGTCCTGTGGTTGATAAATTCGAGACTGCCCGTGTGC
TTTCTGTCAAAGTGGGGCAATGATACAAAATCTTGGGCTTGTTCGTTGTG
GGAGAATGGGGGCTGGTGCAGTGTCGCGGTATTGTTCCTCCTCCCTTCAT
CCAGCTCTCGTACACAGAAAAATGTGGATTGCTGATCAATTATTCGTCTA
TGTACAAATACCAGGTGTATTCTTCTTCCGTCTTTATTCTTTCATTTGTT
GAGCAAACATGTTGGAAGAGACCGGAATGAGGACCATGTTCTGGAACCCA
TTCTCTCGCAACCTCCCTGTTTTTATTCGGGTCCTTCCACCCGACTGTAG
ATTCACTTGGAATTGATGATTAGCCCTGCCCGGAATAGTTACATGTTCTG
CGAGACGGAGGGCTTGCCGTTGTGCTCACCGTTGTGCTTGCCGTAGGCGG
GAACCTTCCAACTGGAGATGACAAGTAGGTAGTTGAACTGGGATAAATTT
ATGGTCGAACTCGTCTCTTCAAGGTCAAACTCTTCTCCGCTGTTGAACCT
GCATCTCAGTGTGCCTAGGTCAAGAGGTTCCTTTTCTGTGTTGTTTGCAC
GTCCAGCGTGTCTCCATTCACGCCTTTTTAGGCGGAATCTTGATGTTCTC
TACGGTGACGCTTGTACACCTTAACCCCATCCTATTTGACATATTTCCTC
GGACCACAGTAACATACTGCAGCACAGGCGTTTGCACAGTCAATTATATG
ACACTTGCTAACGCCAGCTTTTTGTTAGCTGTCCTCTATCTTCAACGTGG
AAGAAATTGTTCACAGGAACCAATCGACTCTAACCTTGTTCTATCGTTCA
CATGAGTGCTCTGCGTCTGTATTTGTAGTATTCACCATCTGCCACACCAA
GTCCCCAATAGGCAGCTAACGGATTTAGTTGCAGTCGTCTCCACGTCTTG
TCCACGTCTGGAATGCATGCTCATGAGTGTACCGTCTTCCACGCAGAAGG
GTAGCGTGAATACCCCGTTGGACTCAGCAAAAGTATGGTGCCATTTTTCT
AAACTGCAGGCCATCAACGTTTAATCGTGTATTCGTTTGTTGCGTACATG
TGCAAACTCCTGACCTTGGTTGAAATATTCGAAGGGGCACCCGATGTTGT
TTGCTGCGGTCACAAACCTCGAGGGCGAAGGCTGAGGGTCGTGTGTCTGT
CGGACACGCACGGCAAACACGACGCGATAAAGAGCAAAATACCAGGTAAG
TTTAGGCGTTGGAAAGCACGGCAAGCTGTCCACTACGTGAAAGTTCAGTG
TCCGGTTGTGTGTGGTTCATGAGTGTTTTTTGAGTGTATAAAATCTAAAT
TCGAACCGGGTATACGTCGCCGCTGCTTTACTGGTTACTGGTCTCACGCC
GTAGATGTGGGTACCCGCCGAACCCAATAATGGGTTTGCTATATCTACCG
GCTGCAGTATACACAGAATTGGTTTTTGTTGTGGAATGTCTAGTAGAATT
TTATGTTTCATGTGGGGAGGGGCCACGGTGGACGCTGTTCAGTCTTGCGA
TGGCGTCACTTTAGTATTATTTTCGGAATGCATACTCCGTCAGGCGGGGC
TCTTGACCATGGAGGTTCTTCACCAACACCAGCTCTTGATTCAAATCGTT
GCTGGTATACTAAATGCACAGATGGCGATATCCTTATTCACTGCGGAGAT
TTTTCAACCAAGCTCTCCCAGCGAGATTTCGAAACGGCTACTGAGGATTT
CGATCGCTTCTTGGGGTCACTACCACATCCTCACAAAGGTGAGGTACCCG
ACATGACCCCGGCACGTCAGCCTGCACGCGAGACTGCCCCCAATACGGCG
TCCCGCGCATCCCTCTTCCAAAACCTGTGATTGTGGTAAACGTTTTTTTT
TCAAAACTTAATCTTTGTGTCGACGTTTTCGTGTGTGTGTGTGTGTGTTT
GATGTTCCGTGTTTTACACATCACGCCCTCCTCTCCATTCGCTTGATGTT
TCCTCTCCCTTGGCTCTAGTGATCATCGCCGGCAACCACGAGATCGCGTT
TAACTCCTACTCAAGGGAGCAGATACAACGTCGTATAAGGTGACCCTATC
GGTACTTTGTCGCCCGCCCACGGTCACGGGTACCCCCAAGCCTCCGCCCC
CCCCCACCCCCCTCTCTATCTACTTGGTGCATCTCTTCATCTATCTCGCC
ACGCGCAACCTTTCGCTCTTTATCAACCGCCAGCCCTCCCACTTTTAGTC
ATGGGTCTTACTCGGACGTCGGGAAGATAACTCACTCGAACCACGTCGAC
TTTGTGCTGTAGGCGGGTTACCTTCCACCCCACGCCGTACGACGTGAGTT
TTGATTGGGTAAATATAGGGCCTCTACCTGCGCCGACGAGTGAGTCAATC
CCCAAGAATCTCGCTCCAGTTGCTCCAGTCGAAGCCCCGGAAGAGAACCG
TCGCCAGATTCCTTGTTGGGGAGGGTAGCCGAATTTTCATCGGTCGTCAT
TCCGGAGGTTTCTTTTCGAGATTGTACTTTCTGGGGCTTGATGCCGTTCC
TTCAAGCGTGCCGCGAGAAAAGGAGGGCACATGTTTGCGCGCGCGTTTTT
TGGTTCAAACACGTAAGAGATGAGCTTGTCTATCTGGTCCCGGTCCGACC
GACCCATAGCCAAGTTGTCTTTGCCGTAGCTCTCAGACGTACGTGACCAG
TAACCCGTGTCCCTCGGCACGCTCTGTGTCGCCTGTATGTCTTTTCAGGA
ACGCTATGTATCTTGAAGATTCAGGAGCGACGGTAATGGGACTGAGATTT
TATGGTACTCCATGGACGAATTCGTCGCATATGGTACGTCCCTCATGTAC
AATCTGGAATCCATCTTGCTAATTGCTTGATCGAAATGTGCGGAGTACCA
TCGTTTCTTGCTTCACAGTCAGGTAGTTCATTAAAAAATAGCTTTGTGTT
GAACTTGCGGAGCTATGTACTTGGTCTGAAGGTGCACGATCTACCAGCCG
AACGTTTTCCTCTAGAGCGTTAAATAAGTCTACCTGCAGCATCAAGTAGG
TCCAACATTCAAGCGGCATAGCCGGATTTGAGAGTTCTCAATCGCCGGAT
TTGGTAGTCGGTACTTCTTGGCGCGGCGCAAATTAAGCACAGATTTGCCC
GAAGTCACACCTCTGGTTCCCAAGTAGGTGATGGTTTAACAATGCCGATC
GCCACATCATCGGAGGGGTTTAATCAAGCTTTTTTTATATCATGCACAAG
ATGACTTGTCTAGGGAGTCTCCAGAATGTTGAAATTTAGTATTTGACACG
CCAGATCCCTGACACCGTATCTCCCTTTCCCTCGCCTTCACTGTCCCCTT
GCCCTCGACTTCCCCGTTTCTTGTATGTTTGTACGCGTTACACAGGGTTT
CAGCTGTAGGGGAACGGAGCTGGAGAGCAAGTGGGCCAAGATACCGTCAG
GCGTAGACATTCTTCTATCGCACATGCCGCCGTACAACGTGCTTGATCTC
GCATTCGATCCTGGGAGCACGGCGAAGGACAACCCTTGCCCCGTGTGCCG
TGAAACCCATCGCAGGCAAGCGTTGGTGCTCTTTTGCGCCATGTTCGCGC
TTCGCGTATCCTTGACATATATTCATAATCTTATTGTCTGTACTGCTCCA
ACAATAATAATCCGTTTAGGTTTGAGCAAAATTTTTATAGTTCCTCGCTT
CTAACAGGGCGCATGATCCGTTTTCTTTTTTTTCTCGTCTGTACTCTAGA
TGCAATCCAATCCAATCCAATACGTTGTGTGTATATGTGTGTGCTTGCTT
CATGTCTCAGCTACGCGCACTGGGGCAGCTGGAGTCTTACCGACCGAGTG
AAGCAGTTGAGACCGAAAGTTCATGTTTTTGGGCATGTGCACAACAGTCA
CGGCATCGTGAGGAAGGGGGAGACTCTTTACATCAACGCTGCCCAGGACG
AAAACCCTCAACCTATTTTTTTCGATATCTGGGTCTGAAACTTGGAGTTA
GTACATGAGGTGGACTTGACCGTGTTGTGTTTCGTGTGTGGATTGTCGCC
ATTGTTCGTGTTTGGTTCCTCATCAAAATGGATTTGTCTTATGTCCATTA
GTTCTCCGATACCGTCTTGTATTTACATCTTGAGCCTCTTGTCAGGCAGT
AGCTCAGTTTTGACTGTTAAGGGAAAAATTGACAGAAAAAACTCAGCGGA
GGGTATGCGGGTGTCGCCCCCATGTATATAATACATTTCTTGGAGGGATA
GTCCCAGGAACAGATCCATTATCCGTACAGCGGGTGGGAGAATTGCCAAA
CGTGCGTCTGATGTCTGCGAGACTGTCGGAGCCTAGCTATATTTTGTAAA
GTGATGGGTGAAGAAGTCGGGATGGGCGGTGGGTAGCTTTGTTTATATGG
ATAAATGAAGGAATTTTAGTATCGTCCTATGATAAGGTAGTTTACTTGTG
ACCGAAAAATGTTTTTACCCTAGTGTTGAAAAAGAACGGTTATCCATATT
AATGTAGAATATATCGCATAGTGCGGAAATTGAGCAGAACCGTGGTTGAT
TTTGCTGCCCTTGTGGGCACGTCTCAGCGTGTGCGTGAAACATGTTACTT
CGCCCAACGGCGGCAATTTAAACTCTGCTCCCGCGTCCCATACGTGCGGG
TGAGGGTGAGGATCGATTTTTAAAAGTTCAGGAACAGCGTCAGCTCTGAC
TGCGTCGGGGTAGTAAGGTGTGGATCGTGTGGTTGGCAAGGGAGAGTTGA
TCTTCGAAATTGATGACCCATCTTGTTATTGATGAAACGGTTTTGGTAAT
TTCACCAACAACGGTTGTTGAATCATGCTAAACGGCCTGAGAGTGCGTGG
AAGTACATGATATCTGCAATCACGAGCCGTAATTGGTATTGTAATCAACG
AATCATTGGCTGTCGAGAAAAGGGTTAAAATATTTTCCTCATAATTTCGT
GATTTCGCTCCTCTTTGAATTACAATTAGATTATCAATTTGAATGGAAAG
CATTTGTGTTCTTAACAGCCAGAGAAAAGAAGCATGATATTCTGTCAATC
AACTGCTTGCTTTTGACATGTCAAGCAAGATATTTAACAAGATAAATATT
TCATTTCGAAAACAAGGTGCAGAGAGAAAAGAAAACTCGACTTTGATCCA
TACGATAAATTGATTATTCCTTTTAAGTCATATCTACGCATTAGGGAAAA
GAGTTCGGCTAAAATGTACTAAGTAAATAACCTCATTTGGCGGATATATC
ACGGTAAAAAAAAGATGTTACGTCCATTTATCATTACCGGTAAGGTAGAA
ATAACGGTGATGAATATTGCAGATCGATGGAATGTGAGTGTGACAAAACG
GAAATGAGAGTCCTCTATGGTGACATGTTATGAAGCAAGGTTTATTTGCC
ACATTGAAAATAGGGTTTTATCGAAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2476:1749..7676+

>mRNA_H-paniculata_contig2476.6719.1 ID=mRNA_H-paniculata_contig2476.6719.1|Name=mRNA_H-paniculata_contig2476.6719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig2476:1749..7676+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGGTTCCAGAAGTCGGAGCTTCGACCGTTTGGGCTTTGTAGAACC
GAGGTCACGAAGTTCGGGTTTTGACCATTTTGCGCCTTCGAGTGCAGAGC
CTGATTACTCGAGTACGCGAGGCAGCCATGCGAAGTCAGGAAGCTCAAGC
GCCAAGAAGCGACCGAGGTCCCGGGAGAGGCGGAGGGCGGAGAACCAAGT
GGCCTCGTCTGATGGTTCTACGATATTTGCTTTGAATGAGGGGTTCCAGA
AGTCGGAGCTTCGACCGTTTGGGCTTTGTAGAACCGAGGTCACGAAGTTC
GGGTTTTGACCATTTTGCGCCTTCGAGTGCAGAGCCTGATTACTCGAGTA
CGCGAGGCAGCCATGCGAAGTCAGGAAGCTCAAGCGCCAAGAAGCGACCG
AGGTCCCGGGAGAGGCGGAGGGCGGAGAACCAAGTGGCCTCGTCTGATGG
TTCTACGATATTTGCTTTGAGGGCACCCGATGTTGTTTGCTGCGGTCACA
AACCTCGAGGGCGAAGGCTGAGGGTCGTGTGTCTGTCGGACACGCACGGC
AAACACGACGCGATAAAGAGCAAAATACCAGGGGCACCCGATGTTGTTTG
CTGCGGTCACAAACCTCGAGGGCGAAGGCTGAGGGTCGTGTGTCTGTCGG
ACACGCACGGCAAACACGACGCGATAAAGAGCAAAATACCAGATGGCGAT
ATCCTTATTCACTGCGGAGATTTTTCAACCAAGCTCTCCCAGCGAGATTT
CGAAACGGCTACTGAGGATTTCGATCGCTTCTTGGGGTCACTACCACATC
CTCACAAAGATGGCGATATCCTTATTCACTGCGGAGATTTTTCAACCAAG
CTCTCCCAGCGAGATTTCGAAACGGCTACTGAGGATTTCGATCGCTTCTT
GGGGTCACTACCACATCCTCACAAAGTGATCATCGCCGGCAACCACGAGA
TCGCGTTTAACTCCTACTCAAGGGAGCAGATACAACGTCGTATAAGTGAT
CATCGCCGGCAACCACGAGATCGCGTTTAACTCCTACTCAAGGGAGCAGA
TACAACGTCGTATAAGGAACGCTATGTATCTTGAAGATTCAGGAGCGACG
GTAATGGGACTGAGATTTTATGGTACTCCATGGACGAATTCGTCGCATAT
GGAACGCTATGTATCTTGAAGATTCAGGAGCGACGGTAATGGGACTGAGA
TTTTATGGTACTCCATGGACGAATTCGTCGCATATGGGTTTCAGCTGTAG
GGGAACGGAGCTGGAGAGCAAGTGGGCCAAGATACCGTCAGGCGTAGACA
TTCTTCTATCGCACATGCCGCCGTACAACGTGCTTGATCTCGCATTCGAT
CCTGGGAGCACGGCGAAGGACAACCCTTGCCCCGTGTGCCGTGAAACCCA
TCGCAGGGTTTCAGCTGTAGGGGAACGGAGCTGGAGAGCAAGTGGGCCAA
GATACCGTCAGGCGTAGACATTCTTCTATCGCACATGCCGCCGTACAACG
TGCTTGATCTCGCATTCGATCCTGGGAGCACGGCGAAGGACAACCCTTGC
CCCGTGTGCCGTGAAACCCATCGCAGCTACGCGCACTGGGGCAGCTGGAG
TCTTACCGACCGAGTGAAGCAGTTGAGACCGAAAGTTCATGTTTTTGGGC
ATGTGCACAACAGTCACGGCATCGTGAGGAAGGGGGAGACTCTTTACATC
AACGCTGCCCAGGACGAAAACCCTCAACCTATTTTTTTCGATATCTGGGT
CTGACTACGCGCACTGGGGCAGCTGGAGTCTTACCGACCGAGTGAAGCAG
TTGAGACCGAAAGTTCATGTTTTTGGGCATGTGCACAACAGTCACGGCAT
CGTGAGGAAGGGGGAGACTCTTTACATCAACGCTGCCCAGGACGAAAACC
CTCAACCTATTTTTTTCGATATCTGGGTCTGA
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