mRNA_H-paniculata_contig24754.6717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24754.6717.1
Unique NamemRNA_H-paniculata_contig24754.6717.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24754.6717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24754contigH-paniculata_contig24754:524..2987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24754.6717.1prot_H-paniculata_contig24754.6717.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24754 695..2976 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.5613837-UTR-H-paniculata_contig24754:523..6941622929721.5613837-UTR-H-paniculata_contig24754:523..694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24754 524..694 +
1691480982.42467-UTR-H-paniculata_contig24754:523..6941691480982.42467-UTR-H-paniculata_contig24754:523..694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24754 524..694 +
1622929721.6148195-UTR-H-paniculata_contig24754:2976..29871622929721.6148195-UTR-H-paniculata_contig24754:2976..2987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24754 2977..2987 +
1691480982.4574134-UTR-H-paniculata_contig24754:2976..29871691480982.4574134-UTR-H-paniculata_contig24754:2976..2987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24754 2977..2987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.5775926-CDS-H-paniculata_contig24754:694..8561622929721.5775926-CDS-H-paniculata_contig24754:694..856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24754 695..856 +
1691480982.4345481-CDS-H-paniculata_contig24754:694..8561691480982.4345481-CDS-H-paniculata_contig24754:694..856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24754 695..856 +
1622929721.5962915-CDS-H-paniculata_contig24754:2931..29761622929721.5962915-CDS-H-paniculata_contig24754:2931..2976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24754 2932..2976 +
1691480982.4459593-CDS-H-paniculata_contig24754:2931..29761691480982.4459593-CDS-H-paniculata_contig24754:2931..2976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24754 2932..2976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24754.6717.1

>prot_H-paniculata_contig24754.6717.1 ID=prot_H-paniculata_contig24754.6717.1|Name=mRNA_H-paniculata_contig24754.6717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MNRTRYDHALSLNRRTAEMVPSTEPWQASVKFRACVKTISNQVQDGLKCT
RAQQPTDEVILTAFKALF*
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mRNA from alignment at H-paniculata_contig24754:524..2987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24754.6717.1 ID=mRNA_H-paniculata_contig24754.6717.1|Name=mRNA_H-paniculata_contig24754.6717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2464bp|location=Sequence derived from alignment at H-paniculata_contig24754:524..2987+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACCCTTGTGCCAAAACGCGAAATCGCTCGAAATCAGCATTTCTGAAAC
AAAAGGTTGAGGACGTTGCAAGGGTAGCCACATGTTCACCTTTTACGCCT
ATCCTTGCAACATCCTCAACCTTTGCAAGTAAGAAAAAGGTTGTAGTCCT
TGATGACCTTGGCAAATACCCATGAATCGCACCCGATACGATCACGCTTT
AAGCCTGAACCGTCGCACCGCTGAAATGGTCCCGAGTACAGAACCTTGGC
AGGCCTCTGTAAAGTTTCGAGCATGTGTCAAAACAATCAGCAACCAAGTG
CAGGACGGACTGAAGTGTACCCGAGCGCAGCAGGTGGGCGAAAGGAGTAG
GAATGGATAGGTGCTGTGATGCAACAGGCATGTATCGTGCCTACCATTGA
TGTTGTGCGGCGGTGTCTGTGCAGTTTGCATGTCTAAGTAACTGTGTAGT
GCTGTGTTGTCTGTGTAAATAGTGAGACTTTGTACAGGGAAGGTAGAGAA
CAGAGAGCAGAAGAGGTGCATCAGACAGTTGCTGCTGTAGTACCCGAGAG
GCACGTGATGGATATTCGCGCAGCTGTTTAGCTACACATACGCATGCATA
AATAGATTTGCCCCTGTATGTACTGTATACAGATGCATGCACATGTGTAT
ACAATGGATATAGAAAGAGGGGTGGACATTGCATGTATGTTATACCGGGC
GGCGTATCTAAAATCAACTTCGGCCTTATCTAACGTTGATACGTACTAGT
ACAGTAGACTGTACACGGAAGATAGGTAGTGGCTGACTTTAAGTGTGTAC
ATGGTTTTAGTGAAGCTGGTACACAGCCAAACATTCGTAGCAACGCGGTA
CATGAGACTTAAGTTCAGGGCCTGTCTTTTTGTGGTTGACCTGCAGCAAG
CAATTCCCGTCGATGTTATGCATCCAAGTGTAGATTGCTGTTTTATGGCG
AAGGCACTGCCTACCTTATTTTCCTGTCAGCAATTTGGACCCTTTCACAC
AATCGACTTAGCCACACAGCAGCTACTGCATGAAGATACATATTAGAAAG
CTGCGAATGGGCGGAATAACAACACTACGAAGTTAGCTTACCAAGTTAGA
CGTTTAGGGTTTTAATCCTTTAAAAAGATACGAATATACCACGATAAGTC
CATGTCTGACTGGTGCAATATTGCAAGCTAACTTGATATATATATATATA
TATATATTGGTAGCCATTCCCACATGGCGAACATCGCGGTTATCGATATT
GTCCTGTTGTTTGTTTTGTAAAGTGCATGGCATGAATATGCACGAGTGGA
TACGTAAACGAAAGTAATAAATTTGAGCGCTAGGGTTATTTTGAGGCGAA
ATGTATTACGTTGTGGTGCATGATGTTGCCGCGGGCTCGATGAGTCAGTA
CTTGAGCCATACTCACCCGCAGGTCGGAACCAGCAGTAGATTGACATATG
CAATGCGTAGACAACCATATCAAGACTTGCAGGTTAACTGAAAATTCTGA
GTCTATCGGACGTCTCGTTTAACTGTTTTGTATTATTTTTGTTCTCGATA
GTACATGAAAAACATGTTGCAAAACCGTTGATACAGAAAAAAGGGGGATG
GGGAGTAATCCCAAAACAAGTAGTTTGGCCACCACCATCGTGTGACCGGG
GCATGGCATTAAAATGGAGCACAACGATAGAGCCCCCCCCCCCCCCCCCT
CTGTGATGAAGCCAGGTGCTAGTCGTGGTAAGGAAAACAACCACATACAA
CTATCTTTGAAATGAGATAACAAGGAGAGAGGTTTGTGTGTGTTTGTTGC
CTTAAGTCCGCTTCAGGAACAACGTTTGAGTACGCATTCCGACAGGTGTT
AAAGGATAGGTGCATGTCCGATTACTTCTCTTGGGACGTGCAATTTTTTT
CCACCGCTGAGCCCGGACTGGTGCAGTTGTGACACAACGGTTGGTTTTGT
GTGACTAGTGATGCGGCGTTTTGCGTGCGTTGCTCGTGGTTTTGTTGACG
GCTATGAATGGCTATTTAGCCGAGGCCATATTTTTAGCGTGTAATTCGCT
TTTCGTGTGCCCGGCTTGCTACATGCGAAATGTAAAAGTAGGATGTTTGT
CCACCACCGCTCAGAGTCAACGATCAGATACTGCAAATTTCCCTCGTCTA
CCCCGACGCATTTCGCTACAAATTACGACCTGACAACTGCGTGGCGTGAA
ACATGCCGCGGGTACTTCGTATGTGGGTTTGCTGCAAGTGTATTGACGTC
GGCTGAAATAGCATACCGCGCGCAACCCTAGAGTAGTGTAATAACTCCGT
TCTCCGTTCTACGTCGTGAGTGACGTGTCAACCACCTCACTCGCGAGTAT
TCAACTGAACGAACCCATACATGCCGTTCCCTTCTCATACATAATGTTTC
GAACGCAGCCTACCGACGAGGTCATCCTCACAGCCTTCAAAGCTCTGTTC
TAGGCACACGGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig24754:524..2987+

>mRNA_H-paniculata_contig24754.6717.1 ID=mRNA_H-paniculata_contig24754.6717.1|Name=mRNA_H-paniculata_contig24754.6717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig24754:524..2987+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCGCACCCGATACGATCACGCTTTAAGCCTGAACCGTCGCACCGC
TGAAATGGTCCCGAGTACAGAACCTTGGCAGGCCTCTGTAAAGTTTCGAG
CATGTGTCAAAACAATCAGCAACCAAGTGCAGGACGGACTGAAGTGTACC
CGAGCGCAGCAGATGAATCGCACCCGATACGATCACGCTTTAAGCCTGAA
CCGTCGCACCGCTGAAATGGTCCCGAGTACAGAACCTTGGCAGGCCTCTG
TAAAGTTTCGAGCATGTGTCAAAACAATCAGCAACCAAGTGCAGGACGGA
CTGAAGTGTACCCGAGCGCAGCAGCCTACCGACGAGGTCATCCTCACAGC
CTTCAAAGCTCTGTTCTAGCCTACCGACGAGGTCATCCTCACAGCCTTCA
AAGCTCTGTTCTAG
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