mRNA_H-paniculata_contig2475.6715.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2475.6715.1
Unique NamemRNA_H-paniculata_contig2475.6715.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: D8LNW0_ECTSI (IPPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW0_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.160e-22
Identity = 47/66 (71.21%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   13 PLAFVQQGSGKLDTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRLED 210
            P     +GS   DTSRKMRPPAWTDRILFSP GP GVS L Y S PGS HSDHRPVYA F VRL D
Sbjct:  365 PSYKYDKGSQHFDTSRKMRPPAWTDRILFSPAGPLGVSSLAYTSVPGSCHSDHRPVYAKFRVRLSD 430          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: A0A6H5KIL2_9PHAE (IPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.780e-22
Identity = 47/66 (71.21%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   13 PLAFVQQGSGKLDTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRLED 210
            P     +GS   DTSRKMRPPAWTDRILFSP GP GVS L Y S PGS HSDHRPVYA F VRL D
Sbjct:  558 PSYKYDKGSQHFDTSRKMRPPAWTDRILFSPAGPLGVSPLAYTSVPGSCHSDHRPVYAKFRVRLSD 623          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: F0YCX8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCX8_AURAN)

HSP 1 Score: 61.2 bits (147), Expect = 2.540e-10
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 FCPSPLAFV-----QQGSGKLDTSRKMRPPAWTDRILFSPGGPSG-------VSLLEYRSEPGSRHSDHRPVYATFSV 198
            F   P+AF       + S + D+S+KMR P+WTDR+L++P  P+        + L  Y +   + HSDHRPV ATF +
Sbjct:   43 FLEGPVAFAPTFKFDKRSNRYDSSKKMRVPSWTDRVLYTPRAPAATRGRRPELMLASYDAVDAATHSDHRPVVATFRL 120          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: A0A7S3JQC5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQC5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.280e-10
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 FCPSPLAF-----VQQGSGKLDTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRLE 207
            F   P++F        G+ + DTS+K R P+WTDRILFSP    G++  EY   P    SDHR VYA F+V +E
Sbjct:  389 FIEPPISFPPTYKFDPGTTQYDTSKKRRVPSWTDRILFSP---DGIAPYEYNYIPSVTTSDHRVVYAKFTVMIE 459          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: A0A482SEG0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEG0_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 1.700e-9
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    1 FCPSPLAF-----VQQGSGKLDTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRL 204
            F  +PL F         S   D+  K R P+WTDRILF P     ++ L Y S+   + SDHRPVYA+F VR+
Sbjct:   16 FTEAPLHFKPTYKFDLNSDVYDSGSKQRIPSWTDRILFVPN--DNITCLAYNSDSSIKTSDHRPVYASFLVRV 86          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: A0A0D2WRQ4_CAPO3 (IPPc domain-containing protein n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WRQ4_CAPO3)

HSP 1 Score: 60.1 bits (144), Expect = 7.200e-9
Identity = 32/73 (43.84%), Postives = 39/73 (53.42%), Query Frame = 1
Query:    1 FCPSPLAFVQQ-----GSGKLDTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRL 204
            F   P+ F        G+ +LD+S K+RPPAWTDRILF      G+  L Y      R SDH+PV A F V L
Sbjct:  397 FVEPPINFAPSYRFDVGTDQLDSSSKLRPPAWTDRILFRG---DGIRALRYNCIHALRSSDHKPVCAVFEVSL 466          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: A0A7S1ZYB7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZYB7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.680e-8
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 1
Query:   13 PLAFVQQGSGKLDTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRLE 207
            P     + S   DTS K R P+WTDRIL+     + V L+ Y S    R SDHRPVY+TF+ +++
Sbjct:  243 PTYKFDKESDTYDTSAKRRIPSWTDRILYK--AQTNVGLISYSSAQNIRTSDHRPVYSTFTAKID 305          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: S8A1F7_PENO1 (IPPc domain-containing protein n=1 Tax=Penicillium oxalicum (strain 114-2 / CGMCC 5302) TaxID=933388 RepID=S8A1F7_PENO1)

HSP 1 Score: 58.5 bits (140), Expect = 2.570e-8
Identity = 33/74 (44.59%), Postives = 41/74 (55.41%), Query Frame = 1
Query:    1 FCPSPLAFVQQ-----GSGKLDTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRLE 207
            F  +P+ F        GS + DTS K R PAW DR+L+   G   V  LEYR     R SDHRPV ATF +R++
Sbjct: 1075 FVEAPITFAPTYKYDVGSDQYDTSEKKRSPAWCDRVLYR--GLGRVKQLEYRRHE-VRASDHRPVSATFKIRVK 1145          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: A0A6S9ALD3_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ALD3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.450e-8
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   49 DTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRLE 207
            DTS K R P+WTDRIL+     + V L+ Y S    R SDHRPVY+TF+ +++
Sbjct:  504 DTSAKRRIPSWTDRILYK--AQTNVDLISYSSAQNIRTSDHRPVYSTFTAKID 554          
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Match: A0A1M8A9I2_MALS4 (Phosphoinositide 5-phosphatase n=1 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=A0A1M8A9I2_MALS4)

HSP 1 Score: 58.2 bits (139), Expect = 3.510e-8
Identity = 33/71 (46.48%), Postives = 37/71 (52.11%), Query Frame = 1
Query:   10 SPLAF-----VQQGSGKLDTSRKMRPPAWTDRILFS-PGGPSGVSLLEYRSEPGSRHSDHRPVYATFSVRL 204
            +PL F        G+   DTS KMRPPAWTDR+LF       G+    Y S    R SDHRPVYA   V L
Sbjct:  844 APLTFPPTYKYDVGTDLYDTSEKMRPPAWTDRVLFRCTNAHLGMDAHAYGSAQSVRLSDHRPVYALLDVDL 914          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2475.6715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW0_ECTSI1.160e-2271.21IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KIL2_9PHAE2.780e-2271.21IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
F0YCX8_AURAN2.540e-1038.46Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3JQC5_9STRA4.280e-1044.59Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A482SEG0_9ARCH1.700e-942.47Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A0D2WRQ4_CAPO37.200e-943.84IPPc domain-containing protein n=3 Tax=Capsaspora ... [more]
A0A7S1ZYB7_9STRA1.680e-843.08Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
S8A1F7_PENO12.570e-844.59IPPc domain-containing protein n=1 Tax=Penicillium... [more]
A0A6S9ALD3_9STRA3.450e-849.06Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]
A0A1M8A9I2_MALS43.510e-846.48Phosphoinositide 5-phosphatase n=1 Tax=Malassezia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2475contigH-paniculata_contig2475:14818..15030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue7.3e-19
Seed eggNOG ortholog2880.D8LNW0
KEGG rclassRC00078
KEGG koko:K20278
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759
EC3.1.3.36
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.472581-CDS-H-paniculata_contig2475:14817..150301622929721.472581-CDS-H-paniculata_contig2475:14817..15030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 14818..15030 +
1691480982.404451-CDS-H-paniculata_contig2475:14817..150301691480982.404451-CDS-H-paniculata_contig2475:14817..15030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 14818..15030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2475.6715.1prot_H-paniculata_contig2475.6715.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2475 14818..15030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2475.6715.1

>prot_H-paniculata_contig2475.6715.1 ID=prot_H-paniculata_contig2475.6715.1|Name=mRNA_H-paniculata_contig2475.6715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
FCPSPLAFVQQGSGKLDTSRKMRPPAWTDRILFSPGGPSGVSLLEYRSEP
GSRHSDHRPVYATFSVRLED*
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mRNA from alignment at H-paniculata_contig2475:14818..15030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2475.6715.1 ID=mRNA_H-paniculata_contig2475.6715.1|Name=mRNA_H-paniculata_contig2475.6715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig2475:14818..15030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTGTCCATCTCCACTTGCTTTTGTTCAGCAGGGCTCGGGAAAGTTGGA CACTTCACGCAAGATGCGCCCACCAGCGTGGACAGATCGGATTCTGTTTT CTCCGGGGGGGCCCTCTGGCGTGTCGTTGCTAGAGTACCGCAGCGAGCCG GGGTCTCGTCATAGCGATCATCGGCCGGTGTACGCCACGTTTAGCGTTAG ACTGGAAGATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2475:14818..15030+

>mRNA_H-paniculata_contig2475.6715.1 ID=mRNA_H-paniculata_contig2475.6715.1|Name=mRNA_H-paniculata_contig2475.6715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2475:14818..15030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTGTCCATCTCCACTTGCTTTTGTTCAGCAGGGCTCGGGAAAGTTGGA
CACTTCACGCAAGATGCGCCCACCAGCGTGGACAGATCGGATTCTGTTTT
CTCCGGGGGGGCCCTCTGGCGTGTCGTTGCTAGAGTACCGCAGCGAGCCG
GGGTCTCGTCATAGCGATCATCGGCCGGTGTACGCCACGTTTAGCGTTAG
ACTGGAAGATTGATTCTGTCCATCTCCACTTGCTTTTGTTCAGCAGGGCT
CGGGAAAGTTGGACACTTCACGCAAGATGCGCCCACCAGCGTGGACAGAT
CGGATTCTGTTTTCTCCGGGGGGGCCCTCTGGCGTGTCGTTGCTAGAGTA
CCGCAGCGAGCCGGGGTCTCGTCATAGCGATCATCGGCCGGTGTACGCCA
CGTTTAGCGTTAGACTGGAAGATTGA
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