mRNA_H-paniculata_contig2475.6713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2475.6713.1
Unique NamemRNA_H-paniculata_contig2475.6713.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: D8LNW0_ECTSI (IPPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW0_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 7.060e-96
Identity = 168/280 (60.00%), Postives = 185/280 (66.07%), Query Frame = 3
Query: 1074 DHSVRVCVLTWNLAEESPPASDVAFLRRAAEGCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRVDRTTFLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGPFQDRVDRVFFFGDLNYRVDLSREDIEMGI 1913
            D+SV VCVLTWNLAEESPPA D+ FLR+A    DLV +GVQEIENLKPRRNEG RTREWRRLL+RTLG+DF+RVGH AMGAVQLTLFARR ++DRVKVIKLTEV CGVGNVLQNKGGIGA+VRVDRTTFLF+AAHLAAHQ KVEERNA YWRI +TL+QEIPPAWVTHA+RKRA                                                                                RVDRVFFFGDLNYRVDLSRED+E+G+
Sbjct:   44 DNSVEVCVLTWNLAEESPPADDLEFLRQATRETDLVAVGVQEIENLKPRRNEGGRTREWRRLLMRTLGRDFVRVGHHAMGAVQLTLFARREVLDRVKVIKLTEVVCGVGNVLQNKGGIGAYVRVDRTTFLFVAAHLAAHQGKVEERNAGYWRIATTLDQEIPPAWVTHASRKRAXXXXXXX---------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVDRVFFFGDLNYRVDLSREDLELGV 296          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: A0A6H5KIL2_9PHAE (IPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL2_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 3.600e-91
Identity = 167/280 (59.64%), Postives = 183/280 (65.36%), Query Frame = 3
Query: 1074 DHSVRVCVLTWNLAEESPPASDVAFLRRAAEGCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRVDRTTFLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGPFQDRVDRVFFFGDLNYRVDLSREDIEMGI 1913
            D SV VCVLTWNLAEESPPA D+ FLR A    DLV +GVQEIENLKPRRNEG RTREWRRLL+RTLG+DF+RVGH AMGAVQLTLFARR ++DRVKVIKLTEV CGVGNVLQNKGGIGA+VRVDRTTFLF+AAHLAAHQ  +EERNA YWRI +TL+QEIPPAWVTHA+RKRA                                                                               DRVDRVFFFGDLNYRVDLSRED+E+G+
Sbjct:  237 DKSVEVCVLTWNLAEESPPAGDLEFLRHATRETDLVAVGVQEIENLKPRRNEGGRTREWRRLLIRTLGRDFVRVGHHAMGAVQLTLFARREVLDRVKVIKLTEVVCGVGNVLQNKGGIGAYVRVDRTTFLFVAAHLAAHQ-AMEERNAGYWRIATTLDQEIPPAWVTHASRKRAXXXXXXX--------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRVDRVFFFGDLNYRVDLSREDLELGV 489          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: A0A835Z9Y7_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y7_9STRA)

HSP 1 Score: 256 bits (654), Expect = 2.040e-75
Identity = 136/282 (48.23%), Postives = 168/282 (59.57%), Query Frame = 3
Query: 1077 HSVRVCVLTWNLAEESPPASDVAFLRRAAEGCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRVDRTTFLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGPFQDRVDRVFFFGDLNYRVDLSREDIEMGISVA 1922
            +SV V V+TWNLAE SP  SD+ FL    E  DL+ +GVQEIENL PRR EG R REWRRL  R LGKDF+R+GH ++G++ LT++ +R L  R K++K+++V CGVGNVLQNKG + AF+RVD+TTFLFI AHLAAHQ KV ERN DYWRI+  LEQEIPPAW+  A ++R K L                                  T T+A          GG+                   R  F D VDRVFFFGDLNYR+DL R D++ G+  A
Sbjct:   29 NSVNVSVVTWNLAEGSPKLSDLRFLEELGEKSDLICLGVQEIENLTPRRQEGHRCREWRRLQHRVLGKDFVRLGHHSIGSIHLTVYGKRELASRTKLVKMSDVVCGVGNVLQNKGAVAAFLRVDKTTFLFITAHLAAHQTKVAERNGDYWRIIGELEQEIPPAWIKRAAKRRQKAL----------------------------------TGTAAAGAAPERAAHGGE-------------------RSVFLDMVDRVFFFGDLNYRIDLDRLDVQRGLVAA 257          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: K8YV14_NANGC (Inositol polyphosphate 5-phosphatase-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YV14_NANGC)

HSP 1 Score: 158 bits (400), Expect = 5.350e-39
Identity = 107/283 (37.81%), Postives = 144/283 (50.88%), Query Frame = 3
Query: 1080 SVRVCVLTWNLAEESPPASDVAFLRRAAE--GCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRV-DRTTFLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGP----FQDRVDRVFFFGDLNYRVDLSREDIEM 1907
            ++ V ++TWN+AE+SP  SDV  + R+AE    DL  +G QE+ENLKPRR+EG R+REWRRLLL   G+  + +    +G +QL + A+R L+  +  + + EV CGVGN+L NKGG     RV   T+FLFI AHLAAH  +VE+RN D  R+++ +                                      QSLL     A S P              GREG  A  +  + P         P  P       +VDR FF GDLNYR++L REDIE+
Sbjct:   73 NLTVSIVTWNMAEKSPSLSDVVLVARSAEVHRSDLCVVGAQELENLKPRRHEGSRSREWRRLLLHVFGRTHMLLCLTKLGGMQLAVLAKRPLLPYLSPLHVCEVPCGVGNLLHNKGGQAVLFRVATHTSFLFINAHLAAHAHRVEDRNGDVDRVMTEV--------------------------------------QSLL-----AFSLP--------------GREGRRARASKESIPLSSSFPERQPHQPPPSALVKKVDRFFFLGDLNYRLELPREDIEV 298          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: A0A4D9D7G4_9STRA (IPPc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7G4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 9.980e-39
Identity = 108/283 (38.16%), Postives = 145/283 (51.24%), Query Frame = 3
Query: 1080 SVRVCVLTWNLAEESPPASDVAFLRRAAE--GCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRV-DRTTFLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGP----FQDRVDRVFFFGDLNYRVDLSREDIEM 1907
            ++ V ++TWN+AE+SP  SDVA + R+AE    DL  +G QE+ENLKPRR+EG R+REWRRLLL   G+  + +    +G +QL + A+R L+  +  + + EV CGVGN+L NKGG     RV   T+FLFI AHLAAH  +VE+RN D  R+++ +                                      QSLL     A S P              GREG  A  +  + P         P  P       +VDR FF GDLNYR++L REDIE+
Sbjct:   80 NLTVSIVTWNMAEKSPSLSDVALVARSAEVHRSDLCVVGAQELENLKPRRHEGSRSREWRRLLLHVFGRTHMLLCLTKLGGMQLAVLAKRPLLPYLSPLHVCEVPCGVGNLLHNKGGQAVLFRVATHTSFLFINAHLAAHAHRVEDRNGDVDRVMTEV--------------------------------------QSLL-----AFSLP--------------GREGRRARASKESLPLSSSFPEQQPHQPPPSVLVKKVDRFFFLGDLNYRLELPREDIEV 305          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: A0A7S2YER7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YER7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.010e-37
Identity = 98/314 (31.21%), Postives = 147/314 (46.82%), Query Frame = 3
Query: 1059 TVDEIDHSVRVCVLTWNLAEESPPASDVAFLRRAAE------GCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRVDRTT--------------FLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGPFQDRVDRVFFFGDLNYRVDLSREDIEMGISVARRHEGR 1940
            T ++ D  + + V+TWNLAEESP   D AF+++  +      G D V I  QE EN+KPRR EGRR+RE+RRL+++ LGK+++ +    +G +Q  LF +  ++++++ +   +V CG+GNV  NKG I AFV+V                   LF+ AH+AAH    E R++D+WRIV+ LE + PP ++   T                                                        GG A+                      + +DR+FF GDLNYR+DL RE  E  ++  +R EGR
Sbjct:  389 TCEDEDTDMHISVVTWNLAEESPQEQDAAFIKKFRKCGMDKKGSDFVLISGQECENIKPRRTEGRRSREYRRLMIKMLGKNYVPIAMHMLGGIQFGLFCKCDMLEKLEHVSAADVTCGIGNVFHNKGAIAAFVKVKARNDHAEKGEARSKSVKMLFVTAHMAAHVKHFEARDSDFWRIVTELEAQAPPGFLPRRTED-----------------------------------------------------SGGTALL---------------------NSMDRIFFCGDLNYRLDLPREVAEHTVAEMQRLEGR 628          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: A0A1Z5JN91_FISSO (Inositol polyphosphate 5-phosphatase INPP5B/F n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JN91_FISSO)

HSP 1 Score: 159 bits (401), Expect = 6.530e-37
Identity = 96/276 (34.78%), Postives = 140/276 (50.72%), Query Frame = 3
Query: 1095 VLTWNLAEESPPASDVAFLRRAAEGCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRVDRTT------FLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGPFQDRVDRVFFFGDLNYRVDLSREDIE 1904
            ++TWNLAEESP   + AFL++   G D+V I  QE EN+KPRR EGRR+RE+RRL+++ LG D++ V    +G +Q  LF +R+++  V+++ + +V CG+GNV  NKG I AFV +   +       LF+ AH+AAH    E RN+D+WRIVS LE+++P  ++      RA  ++               T + LL+                                                       VDR+FF GDLNYR+DL RE +E
Sbjct:  796 IVTWNLAEESPSEEEAAFLKQF-RGNDIVLISGQECENIKPRRAEGRRSREFRRLMIKYLGSDYVPVALHMLGGIQFGLFCKRSMLKDVQLVSVADVTCGIGNVFHNKGAIAAFVTLQNKSNAQSLRLLFVTAHMAAHVKNTEARNSDFWRIVSELEEQVPAQFLA----PRAPEVEC--------------TGEYLLNS------------------------------------------------------VDRIFFCGDLNYRIDLPREIVE 998          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: A0A1Z5JZ17_FISSO (Inositol polyphosphate 5-phosphatase INPP5B/F n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZ17_FISSO)

HSP 1 Score: 158 bits (400), Expect = 8.430e-37
Identity = 94/283 (33.22%), Postives = 138/283 (48.76%), Query Frame = 3
Query: 1095 VLTWNLAEESPPASDVAFLRRAAEGCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRVDRTT------FLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGPFQDRVDRVFFFGDLNYRVDLSREDIEMGISVAR 1925
            ++TWNLAEESP   + AFL++   G D+V I  QE EN+KPRR EGRR+RE+RRL+++ LG D++ +    +G +Q  LF +R+++  V+++ + +V CG+GNV  NKG I AFV +   +       LF+ AH+AAH    E RN+D+WRIVS LE+++P  ++                                      A   P    T  ++                                     VDR+FF GDLNYR+DL RE +E  +   R
Sbjct:  753 IVTWNLAEESPSEEEAAFLKQF-RGNDIVLISGQECENIKPRRAEGRRSREFRRLMIKYLGSDYVPIALHMLGGIQFGLFCKRSMLKDVQLVSVADVTCGIGNVFHNKGAIAAFVTLQNKSNAQSLRLLFVTAHMAAHVKNTEARNSDFWRIVSELEEQVPAQFL--------------------------------------APRAPDVECTGEYLLNS----------------------------------VDRIFFCGDLNYRIDLPREIVEHTVRKGR 962          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: A0A448ZFD9_9STRA (IPPc domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFD9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.710e-36
Identity = 99/302 (32.78%), Postives = 146/302 (48.34%), Query Frame = 3
Query: 1059 TVDEIDHSVRVCVLTWNLAEESPPASDVAFLRR-------AAEGCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRV----DRTT-----------FLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGPFQ-DRVDRVFFFGDLNYRVDLSRE 1895
            T+ + D    V ++TWNLAE+SP   D AF+R+         +G D V I  QE EN+KPRR+EGRR+RE+RRL+++ LGK+++ +    +G +Q  LFA+R++++ ++ + + +V CG+GNV  NKG I AFV+V    D+ +            +F+ AHLAAH    + R++D+WRI S LE + P  ++    RKR                                                                      +  +P G F  D VDRVFF GDLNYR+DL RE
Sbjct:  897 TLGDKDSDTVVSIVTWNLAEDSPSEEDAAFIRKFRKNGVVEGQGSDFVLISGQECENIKPRRSEGRRSREYRRLMIKMLGKEYVPLALHLLGGIQFGLFAKRSILEEIEDVCVADVTCGIGNVFHNKGAIAAFVKVKARNDKQSSTDERRSKSLRMVFVTAHLAAHVKNADARDSDFWRISSELEAQAPEGFLP---RKR----------------------------------------------------------------------EGENPSGSFLFDSVDRVFFCGDLNYRLDLPRE 1125          
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Match: B7FTS6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTS6_PHATC)

HSP 1 Score: 155 bits (393), Expect = 5.800e-36
Identity = 97/301 (32.23%), Postives = 146/301 (48.50%), Query Frame = 3
Query: 1059 TVDEIDHSVRVCVLTWNLAEESPPASDVAFLRR------AAEGCDLVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQLTLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRV---------------DRTT-FLFIAAHLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATTTEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTVITSPPGGVGKSNHPRGPFQDRVDRVFFFGDLNYRVDLSRE 1895
            ++ + +  + V ++TWNLAEESP   D +F+RR        +  D V I  QE EN+KPRR EG R+RE+RRL+++ LGK ++ +   ++G +Q  LF +R+++  V+ I + +V CG+GNV  NKG I AFV++               D++   +F  AH+AAH    E R++D+WRIVS LE + PP +++                             S + ESS                R+ SG +                           + +DR+FF GDLNYRVDL RE
Sbjct:  610 SLQDHEDDINVSIVTWNLAEESPSEEDASFIRRFRRRNDVQKSSDFVLISGQECENIKPRRTEGHRSREFRRLMIKMLGKQYVPIALHSLGGIQFGLFCKRSILSEVETISVADVTCGIGNVFHNKGAIAAFVQIKAKQCSEGEAIGPNRDKSVRMMFATAHMAAHVKNTEARDSDFWRIVSELEAQAPPRFLS-----------------------------SNIVESSK--------------ERECSGSK-------------------------LLESMDRIFFCGDLNYRVDLPRE 842          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2475.6713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW0_ECTSI7.060e-9660.00IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KIL2_9PHAE3.600e-9159.64IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z9Y7_9STRA2.040e-7548.23Endonuclease/exonuclease/phosphatase n=1 Tax=Tribo... [more]
K8YV14_NANGC5.350e-3937.81Inositol polyphosphate 5-phosphatase-like protein ... [more]
A0A4D9D7G4_9STRA9.980e-3938.16IPPc domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2YER7_9STRA3.010e-3731.21Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5JN91_FISSO6.530e-3734.78Inositol polyphosphate 5-phosphatase INPP5B/F n=1 ... [more]
A0A1Z5JZ17_FISSO8.430e-3733.22Inositol polyphosphate 5-phosphatase INPP5B/F n=1 ... [more]
A0A448ZFD9_9STRA1.710e-3632.78IPPc domain-containing protein n=1 Tax=Pseudo-nitz... [more]
B7FTS6_PHATC5.800e-3632.23Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2475contigH-paniculata_contig2475:9888..13385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue1.2e-81
Seed eggNOG ortholog2880.D8LNW0
KEGG rclassRC00078
KEGG koko:K20278
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-08_005620.1
EC3.1.3.36
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons5
Model size1942
Cds size1665
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2475.6713.1prot_H-paniculata_contig2475.6713.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2475 10163..13385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.2706175-UTR-H-paniculata_contig2475:9887..101621622929721.2706175-UTR-H-paniculata_contig2475:9887..10162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2475 9888..10162 +
1691480982.3215709-UTR-H-paniculata_contig2475:9887..101621691480982.3215709-UTR-H-paniculata_contig2475:9887..10162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2475 9888..10162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.2885778-CDS-H-paniculata_contig2475:10162..109181622929721.2885778-CDS-H-paniculata_contig2475:10162..10918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 10163..10918 +
1691480982.3314586-CDS-H-paniculata_contig2475:10162..109181691480982.3314586-CDS-H-paniculata_contig2475:10162..10918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 10163..10918 +
1622929721.301636-CDS-H-paniculata_contig2475:11210..114461622929721.301636-CDS-H-paniculata_contig2475:11210..11446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 11211..11446 +
1691480982.346293-CDS-H-paniculata_contig2475:11210..114461691480982.346293-CDS-H-paniculata_contig2475:11210..11446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 11211..11446 +
1622929721.320683-CDS-H-paniculata_contig2475:11992..120891622929721.320683-CDS-H-paniculata_contig2475:11992..12089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 11993..12089 +
1691480982.3613713-CDS-H-paniculata_contig2475:11992..120891691480982.3613713-CDS-H-paniculata_contig2475:11992..12089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 11993..12089 +
1622929721.3351276-CDS-H-paniculata_contig2475:12384..125131622929721.3351276-CDS-H-paniculata_contig2475:12384..12513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 12385..12513 +
1691480982.3716593-CDS-H-paniculata_contig2475:12384..125131691480982.3716593-CDS-H-paniculata_contig2475:12384..12513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 12385..12513 +
1622929721.3543735-CDS-H-paniculata_contig2475:12938..133851622929721.3543735-CDS-H-paniculata_contig2475:12938..13385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 12939..13385 +
1691480982.3814793-CDS-H-paniculata_contig2475:12938..133851691480982.3814793-CDS-H-paniculata_contig2475:12938..13385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 12939..13385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2475.6713.1

>prot_H-paniculata_contig2475.6713.1 ID=prot_H-paniculata_contig2475.6713.1|Name=mRNA_H-paniculata_contig2475.6713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=555bp
MHHASNSRLQTLRYTTADRETSHRGQRMWNTSAGRAAVTCTCHIALALAA
RCPSVLADGDITAVNFRGTPVALGRWSRERRSVRVDGFAGVNETPPRASP
GSHVVASSRHGLGSFGAVDWVMRRDYVPAEIPMIRGGWGRYSEYSVDARA
LELCRGGAFESNYEDENGETEGEDSGYDDTGYDDGDSDDSGSSENYDTDE
GVLAASEGSDDNNYGYSQQQHQDEVYDGDDEHDFTTDAELERGEDGDGED
GHAEGTEVAAATVDEIDHSVRVCVLTWNLAEESPPASDVAFLRRAAEGCD
LVGIGVQEIENLKPRRNEGRRTREWRRLLLRTLGKDFIRVGHQAMGAVQL
TLFARRALVDRVKVIKLTEVACGVGNVLQNKGGIGAFVRVDRTTFLFIAA
HLAAHQDKVEERNADYWRIVSTLEQEIPPAWVTHATRKRAKRLKAEHATT
TEAAQSAFATSQSLLHESSSAASKPPSTATSAFVRRDASGREGGDAVRTV
ITSPPGGVGKSNHPRGPFQDRVDRVFFFGDLNYRVDLSREDIEMGISVAR
RHEGR
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mRNA from alignment at H-paniculata_contig2475:9888..13385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2475.6713.1 ID=mRNA_H-paniculata_contig2475.6713.1|Name=mRNA_H-paniculata_contig2475.6713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3498bp|location=Sequence derived from alignment at H-paniculata_contig2475:9888..13385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTGACCTGCTTGGTTGACCCCAGAAGATTCCAGAGAATGTTCGTATA AGCCAAGATTTCTGCCCTTCGTTTTTCTTAAGTTCATCTAGTTGCCAGTA AGTGTTGAAGGAGAAGTGCCTGACGCCCAACAACACCGCCCTCCATCTAC CTATCCTATCCTATCAGCAAGTCCACAGCACACGTGTATATATATACACA TAGAGGAGTGGAGTTAAGCTAGTCAAATCTCGATCCTTTAGGCACACATT CGGGTGTTTGCACGGCGACAAATCAATGCACCATGCATCCAACTCGAGAC TTCAGACCCTGAGATACACGACAGCGGATAGAGAAACTAGCCACCGAGGT CAACGGATGTGGAACACCTCAGCTGGTCGAGCTGCTGTAACATGCACATG TCACATCGCTCTCGCTCTTGCAGCTAGGTGTCCTAGTGTGCTCGCCGATG GAGATATTACAGCCGTGAATTTCCGCGGAACGCCGGTTGCTCTTGGGAGA TGGTCAAGGGAGCGGCGATCGGTCAGAGTTGACGGCTTTGCCGGCGTCAA TGAGACCCCACCAAGGGCATCACCAGGATCACATGTTGTTGCGTCGTCGC GGCATGGGCTAGGCAGCTTTGGCGCGGTGGATTGGGTTATGCGTCGTGAT TATGTACCAGCTGAGATACCGATGATACGGGGGGGGTGGGGACGCTACAG TGAATACAGTGTTGATGCTCGAGCACTGGAGCTGTGTCGAGGAGGAGCAT TCGAGAGCAACTATGAGGATGAGAATGGCGAGACGGAAGGAGAGGACAGC GGATACGATGATACTGGATATGACGATGGCGACTCTGACGACAGTGGCAG CAGTGAAAATTACGATACGGATGAGGGGGTGTTAGCGGCGAGTGAAGGGA GCGATGACAACAACTACGGTTACTCGCAGCAGCAACATCAAGACGAAGTT TATGACGGAGACGATGAGCATGATTTCACGACGGATGCAGAGCTTGAGCG TGGGGAAGACGGAGATGGAGAAGATGGGCACGTGAGCTACATTGTCATGT TGTCATACTCCAAGAATAATCACCTAGACAGTATGGAATTTTTTACGCAA TACGCGTCGTGTTTTGACTCGAAATTGATGGAGGTCTTCATGTTAAACTT GAAGGAGTGATAAAATGCGCTCAATATAAATAACGGTAACAAGATGCTTA TAGATGCCAATAAAATGCGCCCCTCTGCACACTGCAAAATTTGATGAAAA ATTGAAGCCAACACGTTCTTCAAGCGTCACTGCAGTCACAGCTCTAATTT AGTGTGTGCAACACGCCGTACAGGCCGAGGGCACCGAAGTTGCGGCGGCG ACGGTGGATGAAATCGACCATTCTGTCCGAGTGTGCGTGCTGACTTGGAA TCTCGCTGAGGAAAGCCCACCTGCCAGCGACGTTGCCTTTCTCCGGCGGG CGGCGGAGGGGTGTGACCTTGTAGGTATCGGTGTCCAGGAGATAGAAAAT CTGAAGCCGCGAAGGAACGAAGGCAGACGGACAAGAGAGTGGCGACGTTT GCTCTTGAGGTTTGTATAAACGTTTTTGTATATGTATCTATGTATATATC TATGTATATATGTCGTTGTTTTCCTATCTCTACCTCTGTTGTGTCTCTAT TAATTTCTCTGTATTGTGTCTTATTTTCCTTGTCTCTGCCCTTGTTTTTT GGCCAGCTCTGCCCCTCTCTAATCGTATCTCTCTCTTTTTCTGTGCTTAT TCTTGCCCCCGTCTTTTCGCATTGTCTCTCTGTCTCTCCCAAGTACCTTC TTAATTGCGTACGTTGTCTGCACAACTTACGCCAACGCCGCTATTATCGA CGTTTTGATAATTGACACATCATGTTCGCAGAGTTTGCGAGCGGCCTTCT AAGGCTATTGCCGCTGGTATGCGTTTATTTCCTTTATGGTGCACCTTATT TGTCTACAGGCGGCCTTAGTGAAGTCACCCTGACACACGAAAACACGCGT TAACATTTGCCGGCATGGGAAGATCTCGTCTGATGGCGCCTAATTTTGCG GCTTCGTCGTTCCTACCTCATCGCGGTGTCGCTTGACGCATGTGTCATCG GACAGAACGCTTGGAAAGGACTTCATTCGGGTGGGGCATCAGGCGATGGG TGCGGTACAGTTGACGCTGTTTGCCAGGCGCGCGTTGGTCGACAGAGTCA AAGTGGGTCTAACATTTATCAATAGTATCAGTGTGGAACTACTATCACTC TTCTGCGTTGGTCAATAGAGTCAAGGTCCCTTTTTTTTCTATCCCATTTT CAAGTCTATCTAGTTAGGCGTAAGGGTCATCATTGGAAACCTCCTGTAAC TGAGCAGCACTCTGAGAGGTATCTCGGCTAGCACAGTGCCAAACGTCGTA TGCTATCGAGGGTGCTGTTGTTTTTTTCTATTAATAATCTCTCGTGTAAT ATTGACGTTTCCTGAATTGAATCTCCTCCTTCCCTGTGGGATGACAGGTC ATCAAGCTAACAGAGGTAGCTTGCGGGGTGGGGAACGTTCTGCAGAACAA GGGAGGGATCGGCGCATTTGTTCGAGTGGACCGTACCACGTTTCTCTTCA TCGCTGCTCACCTCGCGGCACACCAGGTAAAGCGCAGATTGTGATACTGT AACCTCGACTCAGACAGTATATGTAGTTGTAGTGTTTTGTTGCTAGCAAC GAAACAAGGTGGCTCAACCAGGCTAAACGACGAATGGTCGATAGTTTTTC AGGTTTCGGAAGCGCCTGGACTTTTGTCGCCTATCTCTCCAATCTAAGCT TCGATTCACCGAGGAACATTGAAGATGGCGAGCATGAGTTGTCAATCATG TTGCCATGGCGGGGAAGTTATACCAGCATGATTATTATACAAATTCGTAT TCGTTACTGCTGCTGTATACTCTAGCGGTAGCCATGCCCACCTGCAATCG TCATGCTCCAAAGCCCTCGATAAACTCAAATACAATATTTAGTGTCATGA TGACGTGTCTCGTTTGATGCCCTTTGCTCCCTTACTCCTCTCTGCTTGCA GGACAAAGTAGAGGAGCGCAACGCAGACTACTGGAGGATAGTCTCCACGC TTGAGCAAGAGATACCGCCTGCATGGGTCACACACGCAACGAGAAAACGA GCCAAGCGCTTAAAGGCCGAGCACGCCACCACCACCGAAGCAGCGCAATC TGCTTTTGCTACGTCCCAATCTTTGCTGCACGAGAGCTCCTCGGCCGCCT CCAAACCTCCTTCAACTGCCACATCTGCGTTTGTACGGAGGGATGCAAGT GGACGGGAGGGAGGGGATGCTGTGAGAACCGTGATCACCTCTCCGCCGGG GGGCGTAGGGAAGTCGAACCACCCAAGAGGCCCCTTTCAGGATCGTGTTG ACCGCGTGTTTTTCTTCGGCGATCTCAATTACCGTGTTGATTTGTCTCGC GAGGACATTGAGATGGGGATTTCCGTTGCAAGGAGGCATGAAGGGCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2475:9888..13385+

>mRNA_H-paniculata_contig2475.6713.1 ID=mRNA_H-paniculata_contig2475.6713.1|Name=mRNA_H-paniculata_contig2475.6713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3330bp|location=Sequence derived from alignment at H-paniculata_contig2475:9888..13385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCATGCATCCAACTCGAGACTTCAGACCCTGAGATACACGACAGC
GGATAGAGAAACTAGCCACCGAGGTCAACGGATGTGGAACACCTCAGCTG
GTCGAGCTGCTGTAACATGCACATGTCACATCGCTCTCGCTCTTGCAGCT
AGGTGTCCTAGTGTGCTCGCCGATGGAGATATTACAGCCGTGAATTTCCG
CGGAACGCCGGTTGCTCTTGGGAGATGGTCAAGGGAGCGGCGATCGGTCA
GAGTTGACGGCTTTGCCGGCGTCAATGAGACCCCACCAAGGGCATCACCA
GGATCACATGTTGTTGCGTCGTCGCGGCATGGGCTAGGCAGCTTTGGCGC
GGTGGATTGGGTTATGCGTCGTGATTATGTACCAGCTGAGATACCGATGA
TACGGGGGGGGTGGGGACGCTACAGTGAATACAGTGTTGATGCTCGAGCA
CTGGAGCTGTGTCGAGGAGGAGCATTCGAGAGCAACTATGAGGATGAGAA
TGGCGAGACGGAAGGAGAGGACAGCGGATACGATGATACTGGATATGACG
ATGGCGACTCTGACGACAGTGGCAGCAGTGAAAATTACGATACGGATGAG
GGGGTGTTAGCGGCGAGTGAAGGGAGCGATGACAACAACTACGGTTACTC
GCAGCAGCAACATCAAGACGAAGTTTATGACGGAGACGATGAGCATGATT
TCACGACGGATGCAGAGCTTGAGCGTGGGGAAGACGGAGATGGAGAAGAT
GGGCACATGCACCATGCATCCAACTCGAGACTTCAGACCCTGAGATACAC
GACAGCGGATAGAGAAACTAGCCACCGAGGTCAACGGATGTGGAACACCT
CAGCTGGTCGAGCTGCTGTAACATGCACATGTCACATCGCTCTCGCTCTT
GCAGCTAGGTGTCCTAGTGTGCTCGCCGATGGAGATATTACAGCCGTGAA
TTTCCGCGGAACGCCGGTTGCTCTTGGGAGATGGTCAAGGGAGCGGCGAT
CGGTCAGAGTTGACGGCTTTGCCGGCGTCAATGAGACCCCACCAAGGGCA
TCACCAGGATCACATGTTGTTGCGTCGTCGCGGCATGGGCTAGGCAGCTT
TGGCGCGGTGGATTGGGTTATGCGTCGTGATTATGTACCAGCTGAGATAC
CGATGATACGGGGGGGGTGGGGACGCTACAGTGAATACAGTGTTGATGCT
CGAGCACTGGAGCTGTGTCGAGGAGGAGCATTCGAGAGCAACTATGAGGA
TGAGAATGGCGAGACGGAAGGAGAGGACAGCGGATACGATGATACTGGAT
ATGACGATGGCGACTCTGACGACAGTGGCAGCAGTGAAAATTACGATACG
GATGAGGGGGTGTTAGCGGCGAGTGAAGGGAGCGATGACAACAACTACGG
TTACTCGCAGCAGCAACATCAAGACGAAGTTTATGACGGAGACGATGAGC
ATGATTTCACGACGGATGCAGAGCTTGAGCGTGGGGAAGACGGAGATGGA
GAAGATGGGCACGCCGAGGGCACCGAAGTTGCGGCGGCGACGGTGGATGA
AATCGACCATTCTGTCCGAGTGTGCGTGCTGACTTGGAATCTCGCTGAGG
AAAGCCCACCTGCCAGCGACGTTGCCTTTCTCCGGCGGGCGGCGGAGGGG
TGTGACCTTGTAGGTATCGGTGTCCAGGAGATAGAAAATCTGAAGCCGCG
AAGGAACGAAGGCAGACGGACAAGAGAGTGGCGACGTTTGCTCTTGAGGC
CGAGGGCACCGAAGTTGCGGCGGCGACGGTGGATGAAATCGACCATTCTG
TCCGAGTGTGCGTGCTGACTTGGAATCTCGCTGAGGAAAGCCCACCTGCC
AGCGACGTTGCCTTTCTCCGGCGGGCGGCGGAGGGGTGTGACCTTGTAGG
TATCGGTGTCCAGGAGATAGAAAATCTGAAGCCGCGAAGGAACGAAGGCA
GACGGACAAGAGAGTGGCGACGTTTGCTCTTGAGAACGCTTGGAAAGGAC
TTCATTCGGGTGGGGCATCAGGCGATGGGTGCGGTACAGTTGACGCTGTT
TGCCAGGCGCGCGTTGGTCGACAGAGTCAAAAACGCTTGGAAAGGACTTC
ATTCGGGTGGGGCATCAGGCGATGGGTGCGGTACAGTTGACGCTGTTTGC
CAGGCGCGCGTTGGTCGACAGAGTCAAAGTCATCAAGCTAACAGAGGTAG
CTTGCGGGGTGGGGAACGTTCTGCAGAACAAGGGAGGGATCGGCGCATTT
GTTCGAGTGGACCGTACCACGTTTCTCTTCATCGCTGCTCACCTCGCGGC
ACACCAGGTCATCAAGCTAACAGAGGTAGCTTGCGGGGTGGGGAACGTTC
TGCAGAACAAGGGAGGGATCGGCGCATTTGTTCGAGTGGACCGTACCACG
TTTCTCTTCATCGCTGCTCACCTCGCGGCACACCAGGACAAAGTAGAGGA
GCGCAACGCAGACTACTGGAGGATAGTCTCCACGCTTGAGCAAGAGATAC
CGCCTGCATGGGTCACACACGCAACGAGAAAACGAGCCAAGCGCTTAAAG
GCCGAGCACGCCACCACCACCGAAGCAGCGCAATCTGCTTTTGCTACGTC
CCAATCTTTGCTGCACGAGAGCTCCTCGGCCGCCTCCAAACCTCCTTCAA
CTGCCACATCTGCGTTTGTACGGAGGGATGCAAGTGGACGGGAGGGAGGG
GATGCTGTGAGAACCGTGATCACCTCTCCGCCGGGGGGCGTAGGGAAGTC
GAACCACCCAAGAGGCCCCTTTCAGGATCGTGTTGACCGCGTGTTTTTCT
TCGGCGATCTCAATTACCGTGTTGATTTGTCTCGCGAGGACATTGAGATG
GGGATTTCCGTTGCAAGGAGGCATGAAGGGCGTGACAAAGTAGAGGAGCG
CAACGCAGACTACTGGAGGATAGTCTCCACGCTTGAGCAAGAGATACCGC
CTGCATGGGTCACACACGCAACGAGAAAACGAGCCAAGCGCTTAAAGGCC
GAGCACGCCACCACCACCGAAGCAGCGCAATCTGCTTTTGCTACGTCCCA
ATCTTTGCTGCACGAGAGCTCCTCGGCCGCCTCCAAACCTCCTTCAACTG
CCACATCTGCGTTTGTACGGAGGGATGCAAGTGGACGGGAGGGAGGGGAT
GCTGTGAGAACCGTGATCACCTCTCCGCCGGGGGGCGTAGGGAAGTCGAA
CCACCCAAGAGGCCCCTTTCAGGATCGTGTTGACCGCGTGTTTTTCTTCG
GCGATCTCAATTACCGTGTTGATTTGTCTCGCGAGGACATTGAGATGGGG
ATTTCCGTTGCAAGGAGGCATGAAGGGCGT
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