mRNA_H-paniculata_contig24746.6711.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24746.6711.1
Unique NamemRNA_H-paniculata_contig24746.6711.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24746.6711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24746contigH-paniculata_contig24746:2006..2448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.0972526-UTR-H-paniculata_contig24746:2005..21451622929721.0972526-UTR-H-paniculata_contig24746:2005..2145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24746 2006..2145 +
1691480982.2707212-UTR-H-paniculata_contig24746:2005..21451691480982.2707212-UTR-H-paniculata_contig24746:2005..2145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24746 2006..2145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.1130352-CDS-H-paniculata_contig24746:2145..24481622929721.1130352-CDS-H-paniculata_contig24746:2145..2448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24746 2146..2448 +
1691480982.2788966-CDS-H-paniculata_contig24746:2145..24481691480982.2788966-CDS-H-paniculata_contig24746:2145..2448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24746 2146..2448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24746.6711.1prot_H-paniculata_contig24746.6711.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24746 2146..2448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24746.6711.1

>prot_H-paniculata_contig24746.6711.1 ID=prot_H-paniculata_contig24746.6711.1|Name=mRNA_H-paniculata_contig24746.6711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MVSARGNIGIAWMAVRACMDCTAHTQMVQSTTIRLRVLFQPSTLFSGTGN
VDQPSCVPNISLTDSNFDFKFRIFFRFYGIPGLLGFFKFPKKRLLRAYRR
*
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mRNA from alignment at H-paniculata_contig24746:2006..2448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24746.6711.1 ID=mRNA_H-paniculata_contig24746.6711.1|Name=mRNA_H-paniculata_contig24746.6711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=443bp|location=Sequence derived from alignment at H-paniculata_contig24746:2006..2448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTAGAGCCATGCGTGATAGCGACCAACAAACAGCACACCACAGTAAGT
ATGGCAAAGACACCCCAGCTGTTTCAACGGTATGTGCAGCTGGACACACC
GAAAGCGTTTATAAGACCATGAAAGGATCAGGAGGAAACAATGGTCTCGG
CAAGGGGAAACATTGGAATAGCCTGGATGGCAGTGCGTGCGTGCATGGAT
TGTACAGCTCACACGCAAATGGTACAGTCGACAACTATTAGACTTCGGGT
GTTGTTTCAGCCATCGACTTTATTCTCGGGTACAGGTAATGTTGATCAAC
CATCTTGTGTTCCGAATATCAGCCTTACAGATTCGAATTTCGATTTCAAA
TTTCGGATTTTCTTCAGATTTTATGGAATACCCGGTCTGCTCGGTTTTTT
TAAATTCCCAAAAAAAAGGCTGCTCCGTGCTTATAGAAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24746:2006..2448+

>mRNA_H-paniculata_contig24746.6711.1 ID=mRNA_H-paniculata_contig24746.6711.1|Name=mRNA_H-paniculata_contig24746.6711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig24746:2006..2448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTCGGCAAGGGGAAACATTGGAATAGCCTGGATGGCAGTGCGTGC
GTGCATGGATTGTACAGCTCACACGCAAATGGTACAGTCGACAACTATTA
GACTTCGGGTGTTGTTTCAGCCATCGACTTTATTCTCGGGTACAGGTAAT
GTTGATCAACCATCTTGTGTTCCGAATATCAGCCTTACAGATTCGAATTT
CGATTTCAAATTTCGGATTTTCTTCAGATTTTATGGAATACCCGGTCTGC
TCGGTTTTTTTAAATTCCCAAAAAAAAGGCTGCTCCGTGCTTATAGAAGG
TGAATGGTCTCGGCAAGGGGAAACATTGGAATAGCCTGGATGGCAGTGCG
TGCGTGCATGGATTGTACAGCTCACACGCAAATGGTACAGTCGACAACTA
TTAGACTTCGGGTGTTGTTTCAGCCATCGACTTTATTCTCGGGTACAGGT
AATGTTGATCAACCATCTTGTGTTCCGAATATCAGCCTTACAGATTCGAA
TTTCGATTTCAAATTTCGGATTTTCTTCAGATTTTATGGAATACCCGGTC
TGCTCGGTTTTTTTAAATTCCCAAAAAAAAGGCTGCTCCGTGCTTATAGA
AGGTGA
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