mRNA_H-paniculata_contig24729.6707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24729.6707.1
Unique NamemRNA_H-paniculata_contig24729.6707.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24729.6707.1 vs. uniprot
Match: A0A6H5KKY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY4_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.070e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 KARSMTFNPTDKDVFAVCSSDLSLDLWRYTRHPNHELEKL 120
            K R+M FNP D  +FAVCS+DLS+DLWRY R+   ELEK+
Sbjct:  629 KPRTMAFNPVDPGLFAVCSADLSVDLWRYGRN-KQELEKV 667
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BLAST of mRNA_H-paniculata_contig24729.6707.1 vs. uniprot
Match: D8LT10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT10_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.070e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 KARSMTFNPTDKDVFAVCSSDLSLDLWRYTRHPNHELEKL 120
            K R+M FNP D  +FAVCS+DLS+DLWRY R+   ELEK+
Sbjct:  470 KPRTMAFNPVDPGLFAVCSADLSVDLWRYGRN-KQELEKV 508
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24729.6707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKY4_9PHAE2.070e-762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT10_ECTSI2.070e-762.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24729contigH-paniculata_contig24729:2857..2976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.6870828-CDS-H-paniculata_contig24729:2856..29641622929720.6870828-CDS-H-paniculata_contig24729:2856..2964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24729 2857..2964 -
1691480982.0770693-CDS-H-paniculata_contig24729:2856..29641691480982.0770693-CDS-H-paniculata_contig24729:2856..2964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24729 2857..2964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.7100303-UTR-H-paniculata_contig24729:2964..29761622929720.7100303-UTR-H-paniculata_contig24729:2964..2976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24729 2965..2976 -
1691480982.0894973-UTR-H-paniculata_contig24729:2964..29761691480982.0894973-UTR-H-paniculata_contig24729:2964..2976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24729 2965..2976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24729.6707.1prot_H-paniculata_contig24729.6707.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24729 2857..2964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24729.6707.1

>prot_H-paniculata_contig24729.6707.1 ID=prot_H-paniculata_contig24729.6707.1|Name=mRNA_H-paniculata_contig24729.6707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=36bp
MTFNPTDKDVFAVCSSDLSLDLWRYTRHPNHELEKL
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mRNA from alignment at H-paniculata_contig24729:2857..2976-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24729.6707.1 ID=mRNA_H-paniculata_contig24729.6707.1|Name=mRNA_H-paniculata_contig24729.6707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at H-paniculata_contig24729:2857..2976- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGCGGTCCATGACATTCAACCCTACCGACAAAGACGTGTTCGCCGT
GTGCAGCTCTGACTTGTCCTTAGACTTGTGGAGGTACACCCGCCACCCGA
ACCACGAGCTGGAAAAGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig24729:2857..2976-

>mRNA_H-paniculata_contig24729.6707.1 ID=mRNA_H-paniculata_contig24729.6707.1|Name=mRNA_H-paniculata_contig24729.6707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at H-paniculata_contig24729:2857..2976- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATTCAACCCTACCGACAAAGACGTGTTCGCCGTGTGCAGCTCTGA
CTTGTCCTTAGACTTGTGGAGGTACACCCGCCACCCGAACCACGAGCTGG
AAAAGCTGATGACATTCAACCCTACCGACAAAGACGTGTTCGCCGTGTGC
AGCTCTGACTTGTCCTTAGACTTGTGGAGGTACACCCGCCACCCGAACCA
CGAGCTGGAAAAGCTG
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