mRNA_H-paniculata_contig24717.6704.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24717.6704.1
Unique NamemRNA_H-paniculata_contig24717.6704.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.150e-12
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = -1 
Query:  235 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQVGYSVA 435
            HL   S T DG+AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E + ++   VA
Sbjct: 2046 HLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFINELATHVA 2112
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.980e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E ++++
Sbjct:   67 HLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERRFKLTTLAVESFGRLGEEGYEFIDEL 128
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.610e-12
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG+AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E ++++
Sbjct:  577 HLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 638
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.840e-12
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG+ A  S ARK   YAR G+VSFDE  FKLT LAVESFGRLG+ G E ++++
Sbjct:   30 HLRNGSATSDGTVAQASEARKRQHYARPGHVSFDEHSFKLTTLAVESFGRLGEEGYEFIDEL 91
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.430e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E ++++
Sbjct:  202 HLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 263
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.010e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E ++++
Sbjct:  188 HLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 249
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.490e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E ++++
Sbjct:  256 HLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 317
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.710e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E ++++
Sbjct:  179 HLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 240
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.030e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E ++++
Sbjct:  308 HLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 369
[Close]
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 6.240e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = -1 
Query:  250 HLERRSVTIDGSAAAISGARKSAQYARRGYVSFDERCFKLTPLAVESFGRLGKCGVELLEQV 435
            HL   S T DG AA  S ARK   YAR G+VSFDER FKLT LAVESFGRLG+ G E ++++
Sbjct:  345 HLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 406
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24717.6704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE1.150e-1259.70Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KAD2_9PHAE1.980e-1261.29Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHZ7_9PHAE2.610e-1261.29Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JL29_9PHAE3.840e-1258.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K198_9PHAE4.430e-1261.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN7_9PHAE5.010e-1261.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ4_9PHAE5.490e-1261.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEX1_9PHAE5.710e-1261.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JS53_9PHAE6.030e-1261.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLI3_9PHAE6.240e-1261.29Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24717contigH-paniculata_contig24717:3319..3753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size435
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.4910908-UTR-H-paniculata_contig24717:3318..34231622929720.4910908-UTR-H-paniculata_contig24717:3318..3423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24717 3319..3423 +
1691480982.0276136-UTR-H-paniculata_contig24717:3318..34231691480982.0276136-UTR-H-paniculata_contig24717:3318..3423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24717 3319..3423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.527306-CDS-H-paniculata_contig24717:3423..37531622929720.527306-CDS-H-paniculata_contig24717:3423..3753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24717 3424..3753 +
1691480982.0452077-CDS-H-paniculata_contig24717:3423..37531691480982.0452077-CDS-H-paniculata_contig24717:3423..3753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24717 3424..3753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24717.6704.1prot_H-paniculata_contig24717.6704.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24717 3424..3753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24717.6704.1

>prot_H-paniculata_contig24717.6704.1 ID=prot_H-paniculata_contig24717.6704.1|Name=mRNA_H-paniculata_contig24717.6704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MATCVVIEILISSASAVFLSANRRRSPVPPPHWTPHHTGRHTGRHTVSHL
LKQLHSALSQTPKAFHREGGKFETTLVEGHVSSSSVLRAFSSPGNGGGRA
VDGNAPALKV
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mRNA from alignment at H-paniculata_contig24717:3319..3753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24717.6704.1 ID=mRNA_H-paniculata_contig24717.6704.1|Name=mRNA_H-paniculata_contig24717.6704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig24717:3319..3753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACGACGCCACTAAAAATCCGTCCCCACGCTCGAGGATTGAGGGCCCCT
TCTGCTGCTTCTTGCCTTCCGCAGCGCCAATCTGTATCTCTACACCCGTC
TCGAGATGGCTACCTGTGTAGTCATCGAAATTCTTATTTCATCCGCTTCA
GCAGTATTCCTTTCTGCGAATCGTCGTCGCTCTCCTGTTCCCCCACCACA
CTGGACGCCACACCACACTGGGCGCCACACTGGACGCCACACTGTATCCC
ACCTGCTCAAGCAGCTCCACTCCGCACTTTCCCAGACGCCCAAAGCTTTC
CACCGCGAGGGGGGTAAGTTTGAAACAACGCTCGTCGAAGGACACGTATC
CTCTTCGAGCGTATTGCGCGCTTTTTCGAGCCCCGGAAATGGCGGCGGCC
GAGCCGTCGATGGTAACGCTCCTGCGCTCAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig24717:3319..3753+

>mRNA_H-paniculata_contig24717.6704.1 ID=mRNA_H-paniculata_contig24717.6704.1|Name=mRNA_H-paniculata_contig24717.6704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig24717:3319..3753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACCTGTGTAGTCATCGAAATTCTTATTTCATCCGCTTCAGCAGT
ATTCCTTTCTGCGAATCGTCGTCGCTCTCCTGTTCCCCCACCACACTGGA
CGCCACACCACACTGGGCGCCACACTGGACGCCACACTGTATCCCACCTG
CTCAAGCAGCTCCACTCCGCACTTTCCCAGACGCCCAAAGCTTTCCACCG
CGAGGGGGGTAAGTTTGAAACAACGCTCGTCGAAGGACACGTATCCTCTT
CGAGCGTATTGCGCGCTTTTTCGAGCCCCGGAAATGGCGGCGGCCGAGCC
GTCGATGGTAACGCTCCTGCGCTCAAGGTGATGGCTACCTGTGTAGTCAT
CGAAATTCTTATTTCATCCGCTTCAGCAGTATTCCTTTCTGCGAATCGTC
GTCGCTCTCCTGTTCCCCCACCACACTGGACGCCACACCACACTGGGCGC
CACACTGGACGCCACACTGTATCCCACCTGCTCAAGCAGCTCCACTCCGC
ACTTTCCCAGACGCCCAAAGCTTTCCACCGCGAGGGGGGTAAGTTTGAAA
CAACGCTCGTCGAAGGACACGTATCCTCTTCGAGCGTATTGCGCGCTTTT
TCGAGCCCCGGAAATGGCGGCGGCCGAGCCGTCGATGGTAACGCTCCTGC
GCTCAAGGTG
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