mRNA_H-paniculata_contig2471.6702.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2471.6702.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI) HSP 1 Score: 247 bits (630), Expect = 1.530e-72 Identity = 166/307 (54.07%), Postives = 196/307 (63.84%), Query Frame = 3
Query: 87 MSEFASTSTPAMKATKGDALEHPVTETEAVRSILVQEIPLLDQELTESSIVQVFSAYGEISKLLLQPNEDSKMQRAIVVFVESEGAIAALHANGRDILGANCTVSLASSMPTVSDDSMASDKASDEATAGSEAGSTTERNLTTAEWIKSIFAKGMVYTRLFDEKLGVSETAKALATRASETARSVNETHNISGRVAAAASTASAKXXEVDTRLGVSEAATRWAKMTKESADKALESNPRVASGVQQTGAAFSSVVKQVSGLAQQAMDGARQ--GTEPQQPPS-IQEGAAEATAGGAADEFSSATPKT 998
M+EFA+ MK +KG LEHPVT+ EAVRSILVQ +PLLDQELTESSIVQVFSAYGEISKLLLQ NE+S+ QRA++VF + GA +AL ANGRDILGANC+VSLASSMP ++D + D SD+ A G R LTTAEWIK IFA+GMVYTRLFDEKLGVS TAK++A + XX E A++WA KES DKALESNPRVA+GV Q G A S+VK VSGLA QAM ++ G P PPS + A T G + + S+ P T
Sbjct: 1 MAEFAAVPGTPMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALND-GLDRDNVSDQPAA---VGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVPANTAGGTFGISESDTSAGAPPT 303
BLAST of mRNA_H-paniculata_contig2471.6702.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.270e-18 Identity = 74/173 (42.77%), Postives = 98/173 (56.65%), Query Frame = 3
Query: 33 LGEADRQRLLRDTKTITIMSEFASTSTP-AMKATKGDALEHPVTETEAVRSILVQEIPLLDQELTESSIVQVFSAYGEISKLLLQPNEDSKMQRAIVVFVESEGAIAALHANGRDILGANCTVSLASSMPTVSDDSMASDKASDEATA---GSEAGSTTERNLTTAEWIKSIF 539
L E L T T + STP + AT D VTE +A RS+LVQ +P+LD++ TE S+V+VFS YG +S+LLLQ S+ QRA+VVF ES GA AAL N RDILGA+C+V L+S++ S++ D G G+ + TTAEWI+ IF
Sbjct: 112 LAERAENALNGRTPTTAEWIQLVMDSTPESTMATLDDDGIQLVTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLA-------GSNERFDRYNVHWMGEAEGALSGGTPTTAEWIQLIF 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2471.6702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2471.6702.1 >prot_H-paniculata_contig2471.6702.1 ID=prot_H-paniculata_contig2471.6702.1|Name=mRNA_H-paniculata_contig2471.6702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp MSEFASTSTPAMKATKGDALEHPVTETEAVRSILVQEIPLLDQELTESSIback to top mRNA from alignment at H-paniculata_contig2471:1055..12222- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2471.6702.1 ID=mRNA_H-paniculata_contig2471.6702.1|Name=mRNA_H-paniculata_contig2471.6702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11168bp|location=Sequence derived from alignment at H-paniculata_contig2471:1055..12222- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2471:1055..12222- >mRNA_H-paniculata_contig2471.6702.1 ID=mRNA_H-paniculata_contig2471.6702.1|Name=mRNA_H-paniculata_contig2471.6702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at H-paniculata_contig2471:1055..12222- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |