prot_H-paniculata_contig2471.6702.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2471.6702.1
Unique Nameprot_H-paniculata_contig2471.6702.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length306
Homology
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BLAST of mRNA_H-paniculata_contig2471.6702.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 1.210e-75
Identity = 155/266 (58.27%), Postives = 179/266 (67.29%), Query Frame = 0 
Query:    1 MSEFASTSTPAMKATKGDALEHPVTETEAVRSILVQEIPLLDQELTESSIVQVFSAYGEISKLLLQPNEDSKMQRAIVVFVESEGAIAALHANGRDILGANCTVSLASSMPTVSDDSMASDKASDEATAGSEAGSTTERNLTTAEWIKSIFAKGMVYTRLFDEKLGVSETAKALATRASETARSVNETHNISGRVAAAASTASAKXXEVDTRLGVSEAATRWAKMTKESADKALESNPRVASGVQQTGAAFSSVVKQVSGLAQQAM 266
            M+EFA+     MK +KG  LEHPVT+ EAVRSILVQ +PLLDQELTESSIVQVFSAYGEISKLLLQ NE+S+ QRA++VF +  GA +AL ANGRDILGANC+VSLASSMP ++D  +  D  SD+  A    G    R LTTAEWIK IFA+GMVYTRLFDEKLGVS TAK++A +                            XX         E A++WA   KES DKALESNPRVA+GV Q G A  S+VK VSGLA QAM
Sbjct:    1 MAEFAAVPGTPMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALND-GLDRDNVSDQPAA---VGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAM 262
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BLAST of mRNA_H-paniculata_contig2471.6702.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.040e-19
Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = 0 
Query:   22 HPVTETEAVRSILVQEIPLLD-QELTESSIVQVFSAYGEISKLLLQPNEDSKMQRAIVVFVESEGAIAALHANGRDILGANCTVSLASSM 110
            H VTE EA RS+LVQ +P+LD ++ TE+++V+VFS YG +SKLLLQ    S+ QR +VVF +S GA AAL  NGRDILGA C+VSL+S++
Sbjct:    8 HGVTEQEAARSVLVQGLPVLDVRQPTEAALVEVFSVYGRVSKLLLQTIHQSQTQRVVVVFKQSAGATAALQQNGRDILGARCSVSLSSTL 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2471.6702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI1.210e-7558.27RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE1.040e-1958.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 32..105
e-value: 0.0014
score: 27.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 41..100
e-value: 1.3E-6
score: 28.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 31..109
score: 10.497
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 28..129
e-value: 7.0E-8
score: 34.2
NoneNo IPR availablePANTHERPTHR32343:SF10SI:CH211-195B21.5coord: 44..267
NoneNo IPR availablePANTHERPTHR32343FAMILY NOT NAMEDcoord: 44..267
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 30..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2471contigH-paniculata_contig2471:2194..12136 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2471.6702.1mRNA_H-paniculata_contig2471.6702.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2471 1055..12222 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2471.6702.1 ID=prot_H-paniculata_contig2471.6702.1|Name=mRNA_H-paniculata_contig2471.6702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp
MSEFASTSTPAMKATKGDALEHPVTETEAVRSILVQEIPLLDQELTESSI
VQVFSAYGEISKLLLQPNEDSKMQRAIVVFVESEGAIAALHANGRDILGA
NCTVSLASSMPTVSDDSMASDKASDEATAGSEAGSTTERNLTTAEWIKSI
FAKGMVYTRLFDEKLGVSETAKALATRASETARSVNETHNISGRVAAAAS
TASAKAREVDTRLGVSEAATRWAKMTKESADKALESNPRVASGVQQTGAA
FSSVVKQVSGLAQQAMDGARQGTEPQQPPSIQEGAAEATAGGAADEFSSA
TPKTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf