mRNA_H-paniculata_contig24700.6701.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24700.6701.1
Unique NamemRNA_H-paniculata_contig24700.6701.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: D8LLF6_ECTSI (ABC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLF6_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 5.950e-35
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1
Query:    1 QMFRHGNVHCDPHGAYILVRPHPRAGKDSGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKDIPG 201
            QMFRHG+VHCDPHGA +LVRPHP A + SGRPQLVLLDHGLYR LTE+FRVDHCRLWKAMVFKDIPG
Sbjct:  396 QMFRHGSVHCDPHGANVLVRPHPEARRGSGRPQLVLLDHGLYRELTEKFRVDHCRLWKAMVFKDIPG 462          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: A0A5A8CRQ7_CAFRO (ABC1 domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRQ7_CAFRO)

HSP 1 Score: 88.2 bits (217), Expect = 1.050e-18
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 QMFRHGNVHCDPHGAYILVRPHPRAGKDSGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKDIPG 201
            Q F+HG +HCDPH   ILVRPHP    D+ R QLVLLDHGLYR L E+FR D+ RLW +++F D  G
Sbjct:  286 QTFKHGFLHCDPHAGNILVRPHPA---DARRAQLVLLDHGLYRELDEKFRGDYARLWTSIIFADEEG 349          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: A0A812UAH5_9DINO (ADCK1 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812UAH5_9DINO)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 QMFRHGNVHCDPHGAYILVRPHPRAGKDSGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKDIPG 201
            Q F+HG +HCDPH   ILVRPHP    D+ R QLVLLDHGLYR L E+FR D+ RLW +++F D  G
Sbjct:  386 QTFKHGFLHCDPHAGNILVRPHPA---DARRAQLVLLDHGLYRELDEKFRGDYARLWTSIIFADEEG 449          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: A0A540K555_MALBA (ABC1 domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540K555_MALBA)

HSP 1 Score: 82.4 bits (202), Expect = 4.130e-18
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    4 MFRHGNVHCDPHGAYILVRPHPRAGKD---SGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKD 192
            MF+HG VHCDPH A +LVRP P +GK       PQL+LLDHGLY++L  + R ++  LWKA++F D
Sbjct:    2 MFKHGFVHCDPHAANLLVRPLPGSGKSFLGKKEPQLILLDHGLYKDLDPETRTNYAALWKALIFSD 67          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: A0A8J2S8Y1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8Y1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.640e-18
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    7 FRHGNVHCDPHGAYILVRPHPRAGKDSGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKDIPG 201
            F  G+VHCDPH A +LVR  P     +GRPQLVLLDHGLYR L ++FR++  RLW+A+   D+PG
Sbjct:  366 FHDGHVHCDPHAANVLVRASP-----AGRPQLVLLDHGLYRELDDEFRLEWARLWRALALADVPG 425          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: A0A314ZB28_PRUYE (Putative ABC1 protein n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZB28_PRUYE)

HSP 1 Score: 83.2 bits (204), Expect = 1.250e-17
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    4 MFRHGNVHCDPHGAYILVRPHPRAGKD---SGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKD 192
            MF+HG VHCDPH A +LVRP P +GK      +PQLVLLDHGLY+ L  + R ++ +LWKA++F D
Sbjct:   37 MFKHGFVHCDPHAANLLVRPLPYSGKSILGKKKPQLVLLDHGLYKELDFETRTNYAKLWKALIFAD 102          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: A0A7S1DP73_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1DP73_HEMAN)

HSP 1 Score: 83.6 bits (205), Expect = 3.440e-17
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 QMFRHGNVHCDPHGAYILVRPHPRAGKDSGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKDIPG 201
            QMF H  VHCDPH + +LVR HP  G   G PQLVLLDHGLYR L   F +++ RLWKA+VF D+  
Sbjct:  232 QMFLHRFVHCDPHPSNLLVRRHPSGG---GSPQLVLLDHGLYRELDPDFVLEYSRLWKALVFGDVQA 295          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: A0A2I0VJC7_9ASPA (ABC1 protein n=6 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VJC7_9ASPA)

HSP 1 Score: 83.6 bits (205), Expect = 4.570e-17
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    4 MFRHGNVHCDPHGAYILVRPHPRAGKD---SGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKDIPG 201
            +FRHG VHCDPH A ++VRP P   K+     +PQL+LLDHGLY+NL    RV++  LWKA++F D+ G
Sbjct:  343 IFRHGFVHCDPHAANMMVRPLPSGRKNLFGQKKPQLILLDHGLYKNLDFATRVNYASLWKALIFADVNG 411          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: F5HFY1_CRYNB (Protein kinase domain-containing protein n=11 Tax=Cryptococcus TaxID=5206 RepID=F5HFY1_CRYNB)

HSP 1 Score: 83.6 bits (205), Expect = 4.600e-17
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    7 FRHGNVHCDPHGAYILVRPHPRAGKDSGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKDIPGKE 207
            F  G VHCDPH   ILVRPHP      G+PQ+VL+DHGLY  L +QFR D+CRLW+++   DIP  E
Sbjct:  353 FSWGFVHCDPHPGNILVRPHPTK---KGKPQIVLIDHGLYIELPQQFREDYCRLWRSLFVIDIPTIE 416          
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Match: UPI001A9E5DA7 (aarF domain-containing protein kinase 1 isoform X2 n=1 Tax=Ictidomys tridecemlineatus TaxID=43179 RepID=UPI001A9E5DA7)

HSP 1 Score: 82.4 bits (202), Expect = 6.240e-17
Identity = 33/66 (50.00%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    4 MFRHGNVHCDPHGAYILVRPHPRAGKDSGRPQLVLLDHGLYRNLTEQFRVDHCRLWKAMVFKDIPG 201
            +F +G VHCDPH   +LVR HP    D+G+ +++LLDHGLY+ LTE+FR+D+C LW+++++ D+ G
Sbjct:  120 IFVNGFVHCDPHPGNVLVRKHP----DTGKAEVILLDHGLYQVLTEEFRLDYCHLWQSLIWMDMEG 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24700.6701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLF6_ECTSI5.950e-3586.57ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A5A8CRQ7_CAFRO1.050e-1859.70ABC1 domain-containing protein n=4 Tax=Cafeteria r... [more]
A0A812UAH5_9DINO1.110e-1859.70ADCK1 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A8... [more]
A0A540K555_MALBA4.130e-1854.55ABC1 domain-containing protein n=1 Tax=Malus bacca... [more]
A0A8J2S8Y1_9STRA9.640e-1856.92Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A314ZB28_PRUYE1.250e-1756.06Putative ABC1 protein n=1 Tax=Prunus yedoensis var... [more]
A0A7S1DP73_HEMAN3.440e-1758.21Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
A0A2I0VJC7_9ASPA4.570e-1753.62ABC1 protein n=6 Tax=Dendrobium catenatum TaxID=90... [more]
F5HFY1_CRYNB4.600e-1756.72Protein kinase domain-containing protein n=11 Tax=... [more]
UPI001A9E5DA76.240e-1750.00aarF domain-containing protein kinase 1 isoform X2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24700contigH-paniculata_contig24700:361..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog2880.D8LLF6
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Exons1
Model size225
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.06016-CDS-H-paniculata_contig24700:360..5821622929720.06016-CDS-H-paniculata_contig24700:360..582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24700 361..582 -
1691480981.8582106-CDS-H-paniculata_contig24700:360..5821691480981.8582106-CDS-H-paniculata_contig24700:360..582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24700 361..582 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.074018-UTR-H-paniculata_contig24700:582..5851622929720.074018-UTR-H-paniculata_contig24700:582..585Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24700 583..585 -
1691480981.8791318-UTR-H-paniculata_contig24700:582..5851691480981.8791318-UTR-H-paniculata_contig24700:582..585Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24700 583..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24700.6701.1prot_H-paniculata_contig24700.6701.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24700 361..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24700.6701.1

>prot_H-paniculata_contig24700.6701.1 ID=prot_H-paniculata_contig24700.6701.1|Name=mRNA_H-paniculata_contig24700.6701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MFRHGNVHCDPHGAYILVRPHPRAGKDSGRPQLVLLDHGLYRNLTEQFRV
DHCRLWKAMVFKDIPGKECFKRL*
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mRNA from alignment at H-paniculata_contig24700:361..585-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24700.6701.1 ID=mRNA_H-paniculata_contig24700.6701.1|Name=mRNA_H-paniculata_contig24700.6701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig24700:361..585- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGTTTAGGCATGGCAACGTGCATTGCGACCCGCACGGCGCATATAT TCTTGTTAGGCCGCACCCTCGAGCTGGAAAGGACTCGGGCCGACCTCAGC TAGTCCTGCTGGACCATGGGCTCTACCGGAACTTGACGGAGCAGTTCAGG GTGGATCACTGCAGACTATGGAAGGCCATGGTTTTCAAAGATATTCCGGG TAAAGAGTGTTTTAAAAGGCTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24700:361..585-

>mRNA_H-paniculata_contig24700.6701.1 ID=mRNA_H-paniculata_contig24700.6701.1|Name=mRNA_H-paniculata_contig24700.6701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig24700:361..585- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAGGCATGGCAACGTGCATTGCGACCCGCACGGCGCATATATTCT
TGTTAGGCCGCACCCTCGAGCTGGAAAGGACTCGGGCCGACCTCAGCTAG
TCCTGCTGGACCATGGGCTCTACCGGAACTTGACGGAGCAGTTCAGGGTG
GATCACTGCAGACTATGGAAGGCCATGGTTTTCAAAGATATTCCGGGTAA
AGAGTGTTTTAAAAGGCTTTGAATGTTTAGGCATGGCAACGTGCATTGCG
ACCCGCACGGCGCATATATTCTTGTTAGGCCGCACCCTCGAGCTGGAAAG
GACTCGGGCCGACCTCAGCTAGTCCTGCTGGACCATGGGCTCTACCGGAA
CTTGACGGAGCAGTTCAGGGTGGATCACTGCAGACTATGGAAGGCCATGG
TTTTCAAAGATATTCCGGGTAAAGAGTGTTTTAAAAGGCTTTGA
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