mRNA_H-paniculata_contig11029.670.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11029.670.1
Unique NamemRNA_H-paniculata_contig11029.670.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11029.670.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.440e-24
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:   97 LVKADRQVIEDNTRKSIIAQGDNKPLDYVFISADAANQTAHALPVLYPPTHDGDRGHAERQKLMATTAEGQFVDVFQTP*TLGTGSCLVTT 369
            +V+ADR VI + T  ++ A+ D KPL++VF+S DAAN T+HALP +YPPTH GDRG++ERQK+MA   EGQFV+V+ TP  LG G  L  T
Sbjct:  102 MVQADRLVIANRTGDAMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACT 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11029.670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE1.440e-2457.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11029contigH-paniculata_contig11029:3695..5772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size378
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11029.670.1prot_H-paniculata_contig11029.670.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11029 3695..5208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928810.0892591-CDS-H-paniculata_contig11029:3694..37901622928810.0892591-CDS-H-paniculata_contig11029:3694..3790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11029 3695..3790 +
1691480628.76792-CDS-H-paniculata_contig11029:3694..37901691480628.76792-CDS-H-paniculata_contig11029:3694..3790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11029 3695..3790 +
1622928810.111482-CDS-H-paniculata_contig11029:4476..46401622928810.111482-CDS-H-paniculata_contig11029:4476..4640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11029 4477..4640 +
1691480628.7759955-CDS-H-paniculata_contig11029:4476..46401691480628.7759955-CDS-H-paniculata_contig11029:4476..4640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11029 4477..4640 +
1622928810.1245685-CDS-H-paniculata_contig11029:5132..52081622928810.1245685-CDS-H-paniculata_contig11029:5132..5208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11029 5133..5208 +
1691480628.7838006-CDS-H-paniculata_contig11029:5132..52081691480628.7838006-CDS-H-paniculata_contig11029:5132..5208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11029 5133..5208 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928810.1379488-UTR-H-paniculata_contig11029:5208..52211622928810.1379488-UTR-H-paniculata_contig11029:5208..5221Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11029 5209..5221 +
1691480628.79291-UTR-H-paniculata_contig11029:5208..52211691480628.79291-UTR-H-paniculata_contig11029:5208..5221Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11029 5209..5221 +
1622928810.1512833-UTR-H-paniculata_contig11029:5743..57721622928810.1512833-UTR-H-paniculata_contig11029:5743..5772Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11029 5744..5772 +
1691480628.806202-UTR-H-paniculata_contig11029:5743..57721691480628.806202-UTR-H-paniculata_contig11029:5743..5772Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11029 5744..5772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11029.670.1

>prot_H-paniculata_contig11029.670.1 ID=prot_H-paniculata_contig11029.670.1|Name=mRNA_H-paniculata_contig11029.670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MRHNNTPRDGAAVWENESGGTQVAQSFPTITTLVKADRQVIEDNTRKSII
AQGDNKPLDYVFISADAANQTAHALPVLYPPTHDGDRGHAERQKLMATTA
EGQFVDVFQTP*
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mRNA from alignment at H-paniculata_contig11029:3695..5772+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11029.670.1 ID=mRNA_H-paniculata_contig11029.670.1|Name=mRNA_H-paniculata_contig11029.670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2078bp|location=Sequence derived from alignment at H-paniculata_contig11029:3695..5772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCACAACAACACGCCGAGAGATGGGGCAGCTGTGTGGGAGAATGA
AAGTGGGGGGACACAAGTAGCTCAATCGTTTCCAACGATCACCACTGCAG
TCAACAATAGATTCGTTCCAATATTGGTGGCTAACAATTAATTAATATTT
TATGTGAGAATCCAACCGCCTCTTTTATTCTTTTGGAATAAAAGGCTCCG
AAATGTTCGTTCGTTTAATTCGTTGGAGTAAGAATTAAACGTTCGTACCA
ACGCTTCAAATCTATTCCATTTAAATTGAAACGGGTTTCTGAAAGGTCCA
ATAGATTAAAATTAATTCATTCCAAGTTTCCGCCCACCCATCCCATTAAC
CACCTCTGCACTGACGACCACTATAGAAAGACACTTTCCTGTCAGGCGTA
TAAATTTCCGCTCGGCGAAGCTGGTGTTGCCTGGCGTCATAATCATGGTC
ATCCACGGGGCAGCAACGTTGTGGTTCACTAACAGCAGCCCCACACCAGC
GTCGACCATGACTGGAAGTGCACCATCTCCACGTCTTGAGGACGAAGATT
AACTCCCTACTCCTCCCAACAAGAAGAGGAGATGTCGAAGCACCTAAGAG
CAAGTGTGACCTGTCGGAGAAGTCAACGAGCGTTTCTTGCCTTGTTTGTG
TTTGTTGTACCTGTTCCATTCGATTCTGGTGACATAATATTGGTGACTCG
CTCAATGCTGTTGTTGTGTAATGCGATATTAACAATATCACCCTGTCTCC
TCTTGTTGTTCTTCGTTCTTTTGTCTTTGCAGCTAGTCAAGGCAGATCGA
CAGGTGATTGAGGACAATACTCGGAAAAGCATAATTGCCCAGGGCGACAA
CAAGCCTCTCGACTACGTCTTCATTAGCGCAGATGCAGCCAACCAGACAG
CCCATGCCTTGCCTGTACTGTACCCGCCAACGCATGATGGGGACAGGTAG
GCCCTAACCCAGTCTGGTACAGGAGGAGGTCGACGAGTTGTTCTTCCTGT
AGGGTACTTTGTACTGCTATAGAGCTACAGAGTAATTAGCTGACACTCGT
GAATCGTTTCCCCCTCTCATGAGCCTGTCTAATAGTGCAGTCTTACTGAG
TGATACTTCGTAGTAATAGCGATGAATCTGATTGTTGCGAAAGCGGATTG
TTGTCATAAAATTTCTGGCTTTCACTCTTCCTATGCAACAGGCTAATTCC
ACCGCTTTTTGTAGAGTGCAAATTATAATCACCTGCATCTGTATAGCCGC
TCCCGCATCTATTTGCCGAGGACCAAGATCGTACTGCTTTCTAATGTGCT
GTGTAAACGAAGAGTGTGTAGGCACTTCGTCGTGCTGTATGTCGCACAAT
ATTCAACGTTATTAAGCGACAAGCCAGTATATTCTCCGGGGGCTTTGCCA
CGGTATCGTTGTAAACCATGAATGTGTTTTCCATGCAGGGGCCACGCTGA
GCGGCAGAAGCTCATGGCTACTACTGCTGAAGGACAGTTTGTGGACGTGT
TTCAGACGCCATAGACGCTTGGTACCGGTGAGCGATTTCAGCGTGTTTGA
AGATTCAGTATGTTGGCACGTCATCATCTAGAAGTGGAGCAACCGCCGAT
TGCAGTAGTTCTTTTCGCTATGCTTCGTGTGGCGGACATGTACCCGTTTA
CGATGTCTCAGAAACAGCAAATACGTAAAAAGCCGTGAAATGACGGTAGT
TGCACAGAGCTAGCAGCAGAGGCAACAGGCCTTTGCTATGCCAATTTAGA
GAGGTTCAACCTGTCAATACTATGTTGTTGTTGCATCCTCTTGTGGCAAT
TCTTAGCGTGGTATGTTGTCTGAAGGCAAATATTATAATGTTGCAACCAT
TTAGTGTGTAGGTGCATAAGGTTTAGGTATGTGGGTAGCGCCAGAGGATA
CAGTACCATTTAAAGTAGGATAAATATTCAGACGACTTCTGCCACCTGAG
AAACAGTCAAACACAATGTTAACAGACCGGCCGATCGCCCCGATACAATC
ATCCAACTGACGACTGAGCCTGACCTGTCAACCTCTCTCACTGATACAGG
AAGTTGCCTTGTGACGACAGTATTGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11029:3695..5772+

>mRNA_H-paniculata_contig11029.670.1 ID=mRNA_H-paniculata_contig11029.670.1|Name=mRNA_H-paniculata_contig11029.670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig11029:3695..5772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCACAACAACACGCCGAGAGATGGGGCAGCTGTGTGGGAGAATGA
AAGTGGGGGGACACAAGTAGCTCAATCGTTTCCAACGATCACCACTATGC
GGCACAACAACACGCCGAGAGATGGGGCAGCTGTGTGGGAGAATGAAAGT
GGGGGGACACAAGTAGCTCAATCGTTTCCAACGATCACCACTCTAGTCAA
GGCAGATCGACAGGTGATTGAGGACAATACTCGGAAAAGCATAATTGCCC
AGGGCGACAACAAGCCTCTCGACTACGTCTTCATTAGCGCAGATGCAGCC
AACCAGACAGCCCATGCCTTGCCTGTACTGTACCCGCCAACGCATGATGG
GGACAGCTAGTCAAGGCAGATCGACAGGTGATTGAGGACAATACTCGGAA
AAGCATAATTGCCCAGGGCGACAACAAGCCTCTCGACTACGTCTTCATTA
GCGCAGATGCAGCCAACCAGACAGCCCATGCCTTGCCTGTACTGTACCCG
CCAACGCATGATGGGGACAGGGGCCACGCTGAGCGGCAGAAGCTCATGGC
TACTACTGCTGAAGGACAGTTTGTGGACGTGTTTCAGACGCCATAGGGGC
CACGCTGAGCGGCAGAAGCTCATGGCTACTACTGCTGAAGGACAGTTTGT
GGACGTGTTTCAGACGCCATAG
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