mRNA_H-paniculata_contig2470.6700.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2470.6700.1
Unique NamemRNA_H-paniculata_contig2470.6700.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2470.6700.1 vs. uniprot
Match: A0A6H5K707_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K707_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.250e-6
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 3 
Query:   21 VNLLHPQKSEKLLSLALTYGSPRQWGEWLRLPLVGAAVEGDAALVKELLAAGADGSAGQ-------MNTDGSTLLHAAADGG 245
            + L     +E LLS A      R W +WL+ PL+GAA +GD   V+ LLAAGA G +G+          +G TLLHAAA GG
Sbjct:  204 IRLACRDMAESLLSSATRLLGERDWADWLKAPLIGAASQGDLDAVRLLLAAGAGGRSGRGIGAWMIPGGEGRTLLHAAASGG 285
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BLAST of mRNA_H-paniculata_contig2470.6700.1 vs. uniprot
Match: D8LHM6_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM6_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 9.600e-5
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 3 
Query:   45 SEKLLSLALTYGSPRQWGEWLRLPLVGAAVEGDAALVKELLAAGADG---SAGQM-NTDGSTLLHAAADGG 245
            +E LLS A      R W +WL+ PL+GAA +GD   V+ LLAAGA G    A  +   +G TLLHAAA GG
Sbjct:  177 AESLLSSATRLLGERDWADWLKAPLIGAASQGDLDAVRLLLAAGAGGRGIGAWMIPGGEGRTLLHAAASGG 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2470.6700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K707_9PHAE4.250e-643.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHM6_ECTSI9.600e-549.30Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2470contigH-paniculata_contig2470:13409..17098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size688
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2470.6700.1prot_H-paniculata_contig2470.6700.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2470 13634..17098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.9771671-UTR-H-paniculata_contig2470:13408..136331622929719.9771671-UTR-H-paniculata_contig2470:13408..13633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2470 13409..13633 +
1691480981.8166938-UTR-H-paniculata_contig2470:13408..136331691480981.8166938-UTR-H-paniculata_contig2470:13408..13633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2470 13409..13633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.9880605-CDS-H-paniculata_contig2470:13633..136551622929719.9880605-CDS-H-paniculata_contig2470:13633..13655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2470 13634..13655 +
1691480981.8266885-CDS-H-paniculata_contig2470:13633..136551691480981.8266885-CDS-H-paniculata_contig2470:13633..13655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2470 13634..13655 +
1622929720.003055-CDS-H-paniculata_contig2470:15190..154501622929720.003055-CDS-H-paniculata_contig2470:15190..15450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2470 15191..15450 +
1691480981.8364472-CDS-H-paniculata_contig2470:15190..154501691480981.8364472-CDS-H-paniculata_contig2470:15190..15450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2470 15191..15450 +
1622929720.0143123-CDS-H-paniculata_contig2470:16918..170981622929720.0143123-CDS-H-paniculata_contig2470:16918..17098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2470 16919..17098 +
1691480981.8468027-CDS-H-paniculata_contig2470:16918..170981691480981.8468027-CDS-H-paniculata_contig2470:16918..17098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2470 16919..17098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2470.6700.1

>prot_H-paniculata_contig2470.6700.1 ID=prot_H-paniculata_contig2470.6700.1|Name=mRNA_H-paniculata_contig2470.6700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MQQPMAADRSTCPPTAKKPNETLKVMKALLAAGADADCNKPRLVKGQEFP
LHVAAKSGNAGVCSALITAGAKVNCRDRNGWTPLHLAARFGQVEVVINLL
RGGADREAEDVNGYRPLHYATMWGHPDTTKTLLEAGATLEPITRVEGTRP
LHIA
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mRNA from alignment at H-paniculata_contig2470:13409..17098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2470.6700.1 ID=mRNA_H-paniculata_contig2470.6700.1|Name=mRNA_H-paniculata_contig2470.6700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3690bp|location=Sequence derived from alignment at H-paniculata_contig2470:13409..17098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCGAGGGAGGGCGATCGGGTAAACTTGCTGCACCCCCAAAAAAGCGAA
AAGCTCCTATCTCTAGCGCTGACATACGGTTCGCCGAGGCAGTGGGGGGA
GTGGCTACGCCTACCCTTGGTCGGCGCCGCAGTCGAGGGCGACGCAGCAC
TGGTGAAGGAACTACTTGCAGCCGGGGCGGACGGGAGCGCGGGACAGATG
AACACAGACGGATCCACCCTCCTTCATGCAGCAGCCGATGGCGGCAGTGA
ACAGGTACGTTTTGGGTGCAAATGTTTGCTCTACGGTGCGGGAGAGTGGT
GAGGACAGTCGGCGTGTTTGTACGTAGTGGGGAGGGTGGCGGGGGTAGCC
GTACACGGTCGTAGTACACCTTGTCGTGGTTCATAAATACATTATTCACC
ATCGCCGCAGGATACTAAAACTTGATCATGTCATCGATAACATGGTACCG
TATCTTCATTTTCCATCTCGAAACAAAAATGAAAATGGAAACCACACTGG
TGCCGGGTTCTTTCCGCTCCATATCCTTTTTTCCACTGTATATGGGAATA
AGAAAGTGCAGATTAGTGTACACGATTTGAGCGGGGACCGCGTATGTGTT
CTTGTGTCAATGCCTGAGGGAGGGAGGCAGAGTGTATATCGGTATCGGAG
GATGTGATTTAGGTCGGTTTCCAAGTACGGGAGAGGTAGTACCCTCGCGT
CGCGTATCGGAGTGGATAGTCTTGGGTATGTGACATCTCGGCCTTTCTGT
CCTGACTCTACTCTTGTATGTCAATCACGATAAAAATTCCGAACTTGGCT
GTTTTTGAATCTGCTCTACCGAGTGTGAGTCAGGTACATGTGCATTGATG
TTCATAACTAAAGAGGGGGTGCTTGCACATGTGCCATGCAGCCATGGGGA
GGAGGGGGGAAGCTACGCGTACAGTTAGGGTGGGAGGAGGGGGTGAGGTA
GGTAGTTTTTCGGGATAATACCGAGGAACCGGAATGTAGGCGTAAAAAAA
TTGACTACGTAGTGTGGGCACATGAAAGACCTCGGATCTTTCTGTCCCAT
TGTATTTACTAGGTATTTTAATGAGGGAAAAGGGTCATTCATGTTCTTTG
AAGGGGTATACGAGCCGGCGTTGGGAGTTTGTGGACACAACTCATTGTTC
TGCCCATTCCCGCTAGTTCATTGCTTGCTGCCGTACGAGGAGAGGAGAGA
TTTCATGTACAGTTCCACTGTAGGTACTCATTGGATGATGTTCATATTTC
TCCGGTGGAGATATCCGAGAGCTACCAAAGGTGGAATTGGCGCCGGGACA
GGAGGGTAGCTCTACACACTGCTAATTTCTCCTTTTGCCCACTGGTGCTC
CCCAACTGCTATCATGCTCAGAGCCCCTGCCCTCCTTAAACATGCAATTA
TGCCATGGATTTTCCTGTTGTAGCGTCTTGGCCCCAGTTTCGCTTGAAAT
GCATCCAGCGTGCTATGCCATCAGAAGGACGAAAAATGTGCACATCATCT
CAACTTTACATTTAATCCCTTAGATTTTCCATGTGAGCATCCTCCACGAT
ATGCCTCATCTCGTTTGACAATGTGGGGAATTTTTCACGACGCCCTCCCT
CGATTCCCCCACCCCGTCCCTACCCTTATCTCGTCACCCGGCAGCAGCCG
AAAATCGATATTATTTCGCGTACCACCTTGTCACAACATTGTGCATAAAG
TAAGAAAGGTCAAGGAATGCTCTCTGCCCAGCTATCATTATTTGTAAAAC
ACTATTTCCCGCCCTTGATATGCGCTGCGGTTATCGATCAACATGTCCTC
CAACTGCAAAAAAACCGAACGAAACCTTGAAGGTCATGAAGGCACTGTTG
GCCGCAGGGGCAGATGCCGACTGCAATAAGCCCCGGTTGGTGAAAGGCCA
AGAATTCCCGCTGCACGTGGCGGCGAAGAGCGGCAACGCTGGGGTATGCT
CGGCCCTGATCACCGCGGGCGCTAAAGTGAACTGCCGAGATCGAAACGGT
TGGACCCCCCTCCATCTCGCCGCGCGCTTCGGGCAAGTGGAGGTGAGAGT
AGCATCTAGCCGACGCATCAGGTAGAAGGAACCGCACGGGCGGGAGATAC
GTTTCGAATACGGTGTGGTTGTTGCGATGATGAACCCAAACTCCAAGCCG
CAGTCGCGTGTGAGGATGAATCATTCACTTCTAGATTGTTCAGCTAGTTA
CTATCGCTTCGTCGAGTGTGGAGTGTGTGCACTAACCTTTATAGCGATGT
TATTCCTCATCAAGGCTTAACTTGTTTGGGTTGTCTAGGTAAAGTACTGG
AGCTCCCAACCCACCGGTACATGGTTGTCTCTTGTCTCTTACAATCGTGG
TAAACGTTACAATCGTGGTAAACGCCAAGCATATAGAAAACGTCACCCAA
ATACCACAAACACGCTCGCCAGGTGTGACTTTACATCAATCGACCTTGCT
AGTGAGTGTCCTACGGAGTAGATGTCCTACTGTAGCTTGTCAATTACCGC
AGCAAGCAAGCCGCCCGCACAGAGTTAAGCTATACAAAAAGCTTGGTATG
ATCAGGCATATACAGAAGAGTACCCACAACAAGTGCCACACACAGACGTA
TATTCGCCGACACAACGAAACGGGCCGTTGGACCTTTTGCGCAAATTTTC
ATGCTTTCATCAAGTTGTCATCACGAGCTGAGAAGTACTTACGGCATGGA
TATGCAGCAGCCAGGAAAGGAGTATTTTGGTTTTCTTCTTAATTGTGAGA
GTCTTACCAGGTATCGCAGGCGCCTAGCGTCGGTTTCCGGCTGTACTGTC
TGTTGTCCTGTATGTAGCCATGTCCTTCACCCACCCGGTAGCTGGATACG
CACGTTTAAACACGCCAGGGGTGGTTACTGTAACGAGGGTGTCTTGTTCT
TTCTGATCCCTCGTTTTTATCTATCTATTAGTACCCGTCACACCATCCTA
ATATCTGCGAGCCCTCATTGGCTAGTCCACCTGCTTTTTCCTTGGTCAGA
ATATATTTACTCGGAGTATGCGTACATGTTAGAATTGTTAAGCACACTCA
AAATCTGCTTCAGGCCCAACATATAGAGAGAGTATTTCGACCCCCTCTTA
TCGAGTCCTTTTTTCAGAGTGGATTTGTTTTACAGAAGTCAGTGGACTTC
GGCGGTGAAGAACTGGGCGAGTTTTGGATTATCAAGATAAGAACTGGTGG
GAAATGCCGCTTGGGTGTGTCTAAAGGACATCTTGTTCGTCCAAGTGTTG
CAACTCCCAAGCTGCGAGCTTGCTAATCTGGTAATTCATGTCTAGTATCT
TTTTGTCCAGAAATCCGTTTAAAAAGACGTTGAAACTAATATTTTAATGT
AAAGGTCAGCGTAAAAGTTCCGACGACCGATAACTATCGCTATATTCCAG
CACCATGTTTCTTTTTTTGCTCTTGGCCCTCTCGGTTTGCCGGCTTTAAT
CACAACCAATACCGAAACGAATCAATTTCTATTGTCATCTTCGCATACAA
ACACACTCAGGTTGTCATCAATCTCTTGAGGGGCGGTGCAGACCGCGAAG
CGGAAGACGTGAATGGTTACCGACCGTTGCACTATGCCACCATGTGGGGA
CACCCTGACACGACCAAAACCCTGCTCGAGGCCGGGGCCACATTAGAGCC
CATCACTCGGGTCGAAGGCACTCGACCCTTGCACATCGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig2470:13409..17098+

>mRNA_H-paniculata_contig2470.6700.1 ID=mRNA_H-paniculata_contig2470.6700.1|Name=mRNA_H-paniculata_contig2470.6700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig2470:13409..17098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCAGCCGATGGCGGCAGATGCAGCAGCCGATGGCGGCAGATCGAT
CAACATGTCCTCCAACTGCAAAAAAACCGAACGAAACCTTGAAGGTCATG
AAGGCACTGTTGGCCGCAGGGGCAGATGCCGACTGCAATAAGCCCCGGTT
GGTGAAAGGCCAAGAATTCCCGCTGCACGTGGCGGCGAAGAGCGGCAACG
CTGGGGTATGCTCGGCCCTGATCACCGCGGGCGCTAAAGTGAACTGCCGA
GATCGAAACGGTTGGACCCCCCTCCATCTCGCCGCGCGCTTCGGGCAAGT
GGAGATCGATCAACATGTCCTCCAACTGCAAAAAAACCGAACGAAACCTT
GAAGGTCATGAAGGCACTGTTGGCCGCAGGGGCAGATGCCGACTGCAATA
AGCCCCGGTTGGTGAAAGGCCAAGAATTCCCGCTGCACGTGGCGGCGAAG
AGCGGCAACGCTGGGGTATGCTCGGCCCTGATCACCGCGGGCGCTAAAGT
GAACTGCCGAGATCGAAACGGTTGGACCCCCCTCCATCTCGCCGCGCGCT
TCGGGCAAGTGGAGGTTGTCATCAATCTCTTGAGGGGCGGTGCAGACCGC
GAAGCGGAAGACGTGAATGGTTACCGACCGTTGCACTATGCCACCATGTG
GGGACACCCTGACACGACCAAAACCCTGCTCGAGGCCGGGGCCACATTAG
AGCCCATCACTCGGGTCGAAGGCACTCGACCCTTGCACATCGCTGTTGTC
ATCAATCTCTTGAGGGGCGGTGCAGACCGCGAAGCGGAAGACGTGAATGG
TTACCGACCGTTGCACTATGCCACCATGTGGGGACACCCTGACACGACCA
AAACCCTGCTCGAGGCCGGGGCCACATTAGAGCCCATCACTCGGGTCGAA
GGCACTCGACCCTTGCACATCGCT
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