prot_H-paniculata_contig247.6697.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig247.6697.1
Unique Nameprot_H-paniculata_contig247.6697.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1197
Homology
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 1640 bits (4246), Expect = 0.000e+0
Identity = 815/1155 (70.56%), Postives = 948/1155 (82.08%), Query Frame = 0
Query:   46 KMAAMAESEEEEEDGHEQVRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQPTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEHGRTRLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLSLGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKV---RASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPASTS-GIYGPGQSDFVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLEDF 1196
            K A   ES     +GHEQV+GVK+KWKLLPHFL++RGLMRQHIDS++YF   +I KIV AK N  VLSD    +FL+YT + +  P +  +   V+ ITP++CRLRDCTY +P+ VNVRYT+G  I+ K+ I IG +P+ML S  C LTGKSE +LA MKECPYDPGGYF+VKGVEKVILMQEQLSKNRVIIE D K N+SA I SSTHERKSRC IHVK+GKVY+ HN+LGDDVPIVV ++AMG  SDQEIVQLVGSEP +V+AF  S+EEA AVGV T+KQAL YIG KMR P KA    +Q      P   EDEAR++L  V+LSH+P   Y+FRAK +YTAHIVRRVL TV+DP+++DDKDYYGNKRLE AGQLISLLFEDLFKRFN +LKR AD  L+K N A  +DI   L GS  IT GF HAISTGNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSD+E  P++RLC D+GVEDV  LSG E+N  ++ LVF+NG+I+G    P +   ++RFLRR+GMVGEFVSVYLH V+RAVYIASDGGRVCRPLLVVE+G+T LT+ HM Q+A GV  L+DL++ GVVEYVDVNEENNCL+AL+  DL+  HTHLE+DPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA+GT ALN +ER+DGLLY LV+PQKPM  TRV+DL+HFD+VP GQN+ IAVMSYSGYDIEDA VLN+GS+DRGFGRCMVFRKHQV ++ +P+GT D I G      A  +P+G   +D  WK+Y+ LD+DGI  VG++ +  T+++NK +P  T         +    A +SYK  + SYVDKV++ +NE E+   K+L+RQ RRPEVGDKFSSRHGQKGVCGIIVPQ DMPF++ GICPDLIMNPHGFPSRMTVGKM+EL+AGKAGVLHGHQAYGTAFGEEFG+AD+V   CQALV+RG+SY GKD+L SG  GEP++NYIFAGPVFYQKLKHMVMDKMHARARGPRA LTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTA VC+GCGLLGY GWCQ CR P+ MS I +PYACKLLFQELQSMNIVPRL+L+++
Sbjct:   32 KFAEGEESPPSMRNGHEQVKGVKDKWKLLPHFLQMRGLMRQHIDSFNYFCTTEIKKIVAAKSNCVVLSDSKADWFLEYTDVYIEEPSMFNEMGNVRDITPYECRLRDCTYQSPIKVNVRYTKGNNIIRKNGIVIGYLPIMLRSAMCHLTGKSEDQLAQMKECPYDPGGYFIVKGVEKVILMQEQLSKNRVIIELDNKGNVSANIQSSTHERKSRCAIHVKHGKVYLHHNTLGDDVPIVVFMKAMGVESDQEIVQLVGSEPHLVDAFGESIEEALAVGVMTQKQALKYIGRKMRNP-KASLNRKQYKARNIPA--EDEAREMLSSVVLSHIPCPNYNFRAKCVYTAHIVRRVLTTVLDPSSLDDKDYYGNKRLESAGQLISLLFEDLFKRFNGDLKRYADTCLAKQNHATPWDISGMLAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDEEPEPLVRLCMDMGVEDVTALSGAEINAPDTYLVFMNGAIIGAHARPELFVRRLRFLRRQGMVGEFVSVYLHDVQRAVYIASDGGRVCRPLLVVENGQTLLTERHMAQLASGVRGLKDLLRIGVVEYVDVNEENNCLIALSDADLTERHTHLEVDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAIGTIALNQYERIDGLLYTLVYPQKPMCKTRVIDLIHFDEVPAGQNSIIAVMSYSGYDIEDASVLNKGSIDRGFGRCMVFRKHQVALKTHPSGTSDSINGPPDPNNADLYPKGE--NDRGWKKYKALDKDGIAYVGAKLEKDTVIINKMTPVGTDISADRAAATKMREASLSYKTSSPSYVDKVMIASNEVENQFFKVLVRQVRRPEVGDKFSSRHGQKGVCGIIVPQADMPFSEMGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLHGHQAYGTAFGEEFGNADKVTDICQALVDRGFSYCGKDILMSGINGEPVLNYIFAGPVFYQKLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTAYVCEGCGLLGYQGWCQGCRRPDSMSSISVPYACKLLFQELQSMNIVPRLRLQEY 1181          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 1575 bits (4077), Expect = 0.000e+0
Identity = 784/1171 (66.95%), Postives = 941/1171 (80.36%), Query Frame = 0
Query:   53 SEEEEEDGHEQVRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNG-KVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMR------APPKAGARVRQQPTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEHGRTRLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLSLGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGK---VRASEFPRGSEAS--------------DPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPASTSGIY---GPGQSDFVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLEDF 1196
            +++ +ED  + V  V +KWKLLPHFL+LRGLMRQHIDS+D+FVN +I  IV A  NRE+ S+ DPKF+L+YT + VG P +D+D Y    +TPFQCRLRDCTYSAP+ V+VRYTRGRQIV K  + IGRIP+ML SCKC+L G+SE+ELA+ KECPYDPGGYF+VKGVE+VILMQEQLSKNRVIIE D K N+SA+ITSSTH+RK R NI VKNG KVY+K+N LGDDVPIVV+L+AMG  SDQEIV +VG  PE+++AF  SLEE   +G+ T+ QAL YIG K+R       P  +G        +R+  SPE+EAR++L  VIL+HVPV+ +DFR K I+  H++RRVL+T  D + +DDKDYYGNKRLELAGQL+SLLFEDLFKR N +LK+ AD  LSKPNR  +FD+ K +  + TIT+GF  AI+TGNW L+RF++DRQGVTQVL+RLS+IS LGMMTR++SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNLALLAHVT+D+E+ P+ +LC+DLG+EDV  LSG E+N  ++ LVFLNG IVG    P      +R LRRKG+V EFVSV LH V+RA+YIA+DGGRVCRPLLV E G  RLT   M Q++ G+L+L +LI+ GVVEYVDVNEENNCL+AL    L++ HTH+EIDPLT+LGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGT ALN +ERLD LLYA+V+PQKP+VTTR LDLV+F+++PGGQNA +AVMSYSGYDIEDAVVLN+ SLDRGFGRC++ RKHQ  +RKY NG  D + G      A     G E S              DPR +R+E LD+DGIC+VG     G++M+NK SP S + +    G   + F   P+SYK PA S+VD+V++T+NE  D L+K+ +RQ RRPEVGDKFSSRHGQKGVCGIIV QEDMPF D GICPDLIMNPHGFPSRMTVGK++E VAGKA V+ G QAYGTAFGE+FGSADRV  C  ALVE G+SYVGK+++TSGT GEPL+ YIF GPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGAS+L+ ERLMISSDAFTA VC+ CGLLGY+GWCQ+CRS E+M+DIRLPYACKLLFQELQSMN++P+LKL +F
Sbjct:   31 ADQSQEDVSKPVTDVADKWKLLPHFLQLRGLMRQHIDSFDFFVNREIKDIVNAASNRELRSEADPKFWLRYTDVHVGEPSVDDDAYVSSRVTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERVILMQEQLSKNRVIIEEDNKGNVSASITSSTHDRKGRSNIFVKNGTKVYLKNNLLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPEMLDAFAPSLEEPYHLGICTQAQALRYIGAKIRNTTQNRGPGPSGMGFA---FYRRASSPEEEAREVLASVILNHVPVINFDFRTKCIFVCHVIRRVLLTHRDRSQLDDKDYYGNKRLELAGQLLSLLFEDLFKRLNVQLKKQADQGLSKPNRTQSFDVIKCIR-TDTITNGFIQAIATGNWKLQRFRMDRQGVTQVLTRLSYISCLGMMTRINSQFEKTRKVSGPRSLQPSQWGMICPADTPEGEACGLVKNLALLAHVTTDEESEPIRKLCFDLGIEDVTLLSGAEINASSNYLVFLNGLIVGCHSRPLRFVRLLRLLRRKGLVAEFVSVCLHEVQRAIYIATDGGRVCRPLLVCEKGVPRLTNMMMRQLSSGLLTLAELIRCGVVEYVDVNEENNCLIALAQTQLTVKHTHMEIDPLTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTVALNQYERLDSLLYAMVYPQKPLVTTRTLDLVNFNELPGGQNAIVAVMSYSGYDIEDAVVLNKASLDRGFGRCLILRKHQTSLRKYANGAADNLRGPPEDTAAVCSGMGGEPSAAQSNLAGAYSIRRDPRLRRFEALDKDGICQVGERLGNGSVMINKESPISVADLNMGSGADPTPFKPTPLSYKGPAPSHVDQVLITSNEGGDLLVKVSVRQCRRPEVGDKFSSRHGQKGVCGIIVAQEDMPFNDDGICPDLIMNPHGFPSRMTVGKLIEFVAGKASVMIGRQAYGTAFGEDFGSADRVVACSGALVENGFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASSLLTERLMISSDAFTATVCERCGLLGYAGWCQSCRSSERMADIRLPYACKLLFQELQSMNVIPKLKLMEF 1197          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 1541 bits (3991), Expect = 0.000e+0
Identity = 759/1133 (66.99%), Postives = 928/1133 (81.91%), Query Frame = 0
Query:   64 VRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQPTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEHGRTRLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLSLGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKVRASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPASTSG---IYGPGQSDFVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKL 1193
            V+ V+EKW+LLPHFLKLRGL+ QHI+S++YFVNV+I KIV A+ N EV S+ DPKF+L+YT + VG P +D+ ++   +ITPF+CRLRDCTYSA ++V+VRYTR  +IV K  I IGRIP+ML SCKC+L GKSE+ELA M+ECP+DPGGYFVVKGVEKVI M EQL+KNRVIIE D K    A+I SSTHERKSR  I VK GKV++KHN+LGDDVPI+V+L+AMG  SDQEIVQLVG E ++ + F  S+E+  A+G++T++QAL YIG K+R+  K+       P  R+  S EDEAR++L  V+L+HVP+ G+DFR K +Y   +VRRVL    D + +DD+DYYGNKRLELAGQL+SLLFEDLFKR N++LKR+AD VLSK NR   FDI K +  + T+T GF HA+STGNWVL+RF++DR GVTQVLSRLS+IS+LGMMTR++S+F+K RKVSGPRALQPSQWGMLCPADTPEGE+CGLVKNLALLAHVT+D++  P++RLC+DLGVEDV+ +SG E+N  +  LV +NG I+G    P  LA ++RFLRR+G VGEFVS+YLHS +RAVYIASDGGRVCRPLLVVE GR RLT  H+  +++G+ +L DL+  GVVEYVDVNEENNC +AL   +L+  HTHLEIDPLT++GVVAGLIP+PHHNQSPRNTYQCAMGKQAMGT A+N +ER+D LLYA+V+PQKPMVTTRVLDL++F+QVPGGQNA +AVMSYSGYDIEDAVV+N+GS+DRG+GRC+V +K Q  IR+Y NG+ D+ VG    ++  R    +D R++++  LDEDG+  VG + +PG I++NK SP  TS    + G   +++   P+++K+ A   VDKV++T+NENE +LIK+ LRQ RRPEVGDKFSSRHGQKGVCGIIVPQEDMPF + GICPDLIMNPHGFPSRMTVGKM+EL+ GKAGVL G QAYGTAFGE+FG+ADRV    + LV  G+SY GKD+LTSGT GE + +YIF GPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGAS LIMERLM+SSD FTA VC+ CGLL   GWCQNCRS E ++D+RLPYACKLLFQELQSMNI+PRL+L
Sbjct:   16 VKEVREKWRLLPHFLKLRGLITQHIESFNYFVNVEIKKIVAAQSNFEVRSEQDPKFYLRYTNVYVGEPTVDDPNFVESSITPFECRLRDCTYSAMIYVDVRYTRNNKIVVKQKIPIGRIPIMLRSCKCLLAGKSEAELAKMQECPFDPGGYFVVKGVEKVINMHEQLTKNRVIIETDRKGQTCASIISSTHERKSRAYIFVKAGKVFLKHNTLGDDVPILVVLKAMGLESDQEIVQLVGPETDMQHLFAPSMEDPYALGIFTQQQALKYIGEKIRSSVKSFRG--SLPVNRRNISVEDEAREVLAHVVLNHVPIAGFDFRRKYMYICQLVRRVLKADKDRSQLDDRDYYGNKRLELAGQLLSLLFEDLFKRMNADLKRHADSVLSKANRTKPFDIIKNIR-TDTLTQGFVHALSTGNWVLRRFRMDRAGVTQVLSRLSYISALGMMTRLNSEFEKTRKVSGPRALQPSQWGMLCPADTPEGEACGLVKNLALLAHVTNDEDAAPIIRLCFDLGVEDVSYVSGAELNRQDVYLVIVNGLIIGIHPDPQDLARRLRFLRRRGCVGEFVSIYLHSGKRAVYIASDGGRVCRPLLVVEGGRLRLTTNHIRHLSMGLGTLPDLLADGVVEYVDVNEENNCFIALKEEELTPSHTHLEIDPLTIMGVVAGLIPFPHHNQSPRNTYQCAMGKQAMGTVAMNQYERIDTLLYAMVYPQKPMVTTRVLDLINFNQVPGGQNACVAVMSYSGYDIEDAVVINKGSIDRGYGRCLVLKKAQASIRRYANGSLDRTVGPPPMTDESR---KNDKRYRKFLALDEDGLPHVGEKVEPGQILINKESPLRTSDPGILEGGSVTEYKPTPVTWKSSASVNVDKVMITSNENEQFLIKVNLRQCRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFNNDGICPDLIMNPHGFPSRMTVGKMIELLTGKAGVLRGRQAYGTAFGEDFGNADRVQFASEELVRHGFSYYGKDILTSGTSGEQICSYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLIMERLMLSSDQFTATVCEKCGLLQRPGWCQNCRSDEAIADVRLPYACKLLFQELQSMNIIPRLRL 1142          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 1535 bits (3973), Expect = 0.000e+0
Identity = 758/1158 (65.46%), Postives = 924/1158 (79.79%), Query Frame = 0
Query:   57 EEDGHEQ--VRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQPTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEHGRTRLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLSLGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKVRASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNK-----------HSPASTSGIYGPGQSDFVSAPMSYKAPAES--YVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSG----WCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLED 1195
            E DG E   V  V+EKWKLLPHFL +RGLM QHIDS+DYFVNVDI  IV A  NREV SDVDP+++L+YT ++VG P I +D +     TPF+CRLRDCTY AP+ V++++TRG QIVN S + IGRIP+ML SCKCVL+ +S +ELA +KECP+DPGGYF++KGVEKVILMQEQLSKNRVIIE D+K + +A ITSSTHERKSRC+I VK G+VY+KHN+LG+D+PI ++ +AMG  SDQEIVQ+VGSEPE    F  SLEE   + + T+KQAL+YIG+K+RA  + G    Q+       S EDEAR+IL  V+LSHVP+  Y+FR K IY  HI+RRVL    DP  +DDKDY GNKRLELAGQL++LLFED FK+ NSE+KR AD+ L K NR + FD+ K L   + IT GF HAISTGNWVLKRF++DR G+TQVLSRLS++S+LGMMTR+ SQF+K RK SGPRALQPSQWGMLCPADTPEGE+CGLVKNLALLAHVTSD++  P+ RLC+DLGVEDV  L+G E++   + LVFLNG IVG+   P +    +R LRR+G VGEFVSVYLHSV+RAVY+ASDGGRVCRPLLVV++G+  L Q HM Q+A G+ +L+DL+++ +VEY+DVNEENNCL+AL+   L+  HTH+EIDPLT++GVV+GLIP+PHHNQSPRNTYQCAMGKQAMGT A+N +E ++ L+Y+LV+P KPMV TRVLDL++FD+VPGGQNA++AVMSYS YDIEDA++LN+ SLDRGFGRC+V RKHQ  +R+YPNG  D + G     EF RG +  D RW+RY +LD+DG+C VG + +PG +MVNK           H P     + G  +     AP+SYK   +   YVDKV++T NE E  LIK+L+RQ RRPE+GDKFSSRHGQKGVCG+IV QE+MPF+D GICPDLIMNPHGFPSRMTVGK++ELV GKAG+L+G Q YGTAFGE+FG+ADRV  C + LV+RG+SYV KD LTSG  GEP+  YIF GPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCL+GYG++ALI ERLM SSDAF+A+VC+ CG+LGY G    WCQNCRS   M+DI+LPYACKLLFQELQSMNI+P+L L++
Sbjct:    8 EVDGGEDAPVAEVREKWKLLPHFLAMRGLMTQHIDSFDYFVNVDIKNIVNAASNREVRSDVDPRWWLRYTNVSVGEPEIFDDAHQRTPATPFECRLRDCTYYAPIIVSIKFTRGNQIVNMSGVPIGRIPIMLRSCKCVLSRQSHAELAALKECPFDPGGYFIIKGVEKVILMQEQLSKNRVIIEVDSKGHTAATITSSTHERKSRCSIFVKAGRVYLKHNTLGEDMPIAIVFKAMGIESDQEIVQMVGSEPETPAQFALSLEEPVVLQILTQKQALTYIGNKIRANQRPGMNHAQK-------SVEDEAREILASVVLSHVPMRAYNFRPKAIYMGHIIRRVLSADKDPELLDDKDYCGNKRLELAGQLLALLFEDKFKQLNSEIKRQADLNLHKANRISPFDVSKLLRPDSCITQGFIHAISTGNWVLKRFRMDRAGITQVLSRLSYVSALGMMTRITSQFEKTRKTSGPRALQPSQWGMLCPADTPEGETCGLVKNLALLAHVTSDEDVTPLRRLCFDLGVEDVELLTGEEIHSTQNYLVFLNGLIVGSHSRPRLFVDMLRALRRRGRVGEFVSVYLHSVQRAVYVASDGGRVCRPLLVVKNGQPMLRQIHMQQLAAGLRTLKDLMREEIVEYIDVNEENNCLIALSDRMLTPEHTHMEIDPLTIMGVVSGLIPFPHHNQSPRNTYQCAMGKQAMGTVAMNQYELMNSLIYSLVYPHKPMVKTRVLDLINFDKVPGGQNATLAVMSYSAYDIEDAIILNKASLDRGFGRCLVLRKHQTSLRRYPNGATDHLKGPPNPEEFHRGRQ--DTRWQRYAKLDQDGLCEVGEKLEPGQVMVNKVMPTNVNDNLDHPPTMGGAVMGAEKP----APLSYKGSVDHHVYVDKVLMTRNETEHCLIKVLVRQCRRPELGDKFSSRHGQKGVCGLIVNQENMPFSDFGICPDLIMNPHGFPSRMTVGKIIELVVGKAGILNGLQGYGTAFGEDFGNADRVVECSKELVKRGFSYVAKDYLTSGITGEPMKAYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLVGYGSAALISERLMTSSDAFSAHVCRKCGILGYLGERGMWCQNCRSSTAMTDIKLPYACKLLFQELQSMNIIPKLTLKE 1152          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: K3X1L2_GLOUD (DNA-directed RNA polymerase subunit beta n=32 Tax=Oomycota TaxID=4762 RepID=K3X1L2_GLOUD)

HSP 1 Score: 1503 bits (3890), Expect = 0.000e+0
Identity = 748/1148 (65.16%), Postives = 905/1148 (78.83%), Query Frame = 0
Query:   64 VRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQ------PTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEH--GRTRLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLSLGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKVR----ASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPAS-TSGIYGPGQSD--FVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLEDF 1196
            V  VK+KWKLLP+FL+LRGL++QHIDS++YF NVD+  IV+AK N  V SD DPKFFLQYT I +G+P IDE+ +   ++TP QCRLRD TY+AP++V+VRY RG +IV  + + IGRIP+ML S  CVLT K E+ELA +KECPYDPGGYF+VKGVEKV+L+ EQLSKNRVIIE DAK+N+ A+ITSSTHERKSR NI +   +VY+K NS G D+PIV++ R MG  SDQEIV L+GSEP++ +A  AS EEA  + V+T+ QAL YIG KM A  K GA   +           + +S  D AR  L  ++L+HVP   Y+FR K IY AHIVRR++ T  D T +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRAA FDI K +  + TIT GF HA+STGNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNLALL HVTSD+E  P+ RLC+DLGV DV+  SG E+N  ++ LV LNG I+GT  +P    +++R +RR G++GEFVSV +H V+R VYIASDGGRVCRPLL+++    +TRLTQ H+D++  GV  L  LI +G VEYVDVNEENNCLVAL   ++    THLEIDP+T+LGVV+GLIPYPHHNQSPRNTYQCAMGKQA+GT A+N +ER+D LLY +V+PQ PMV TRVLDLV+FD VP GQNA++AVMSYSGYDIEDA+VLN+ SLDRGFGRCMVF+K+Q  I+KY NG+ D+IVG        S    G+     R  +Y  LD DGI RVG   + G IM+NK  P      + G    D  +  +P +YK P  +YVDKV+LT++E   +L+K+L+RQTRRPE+GDKFSSRHGQKGVCG I  QEDMPF D GICPDLIMNPHGFPSRMTVGKM+EL+AGKAGVL+G +AYGTAFGE++G+AD V  C + LV+ G++Y GKD LTSG  GEP++ YIF GP++YQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGAS L+MERLMISSDAF+A+VCQGC +LGY GWCQ C+S EK+  IR+PYACKLLFQELQ+MNIVPRL L+++
Sbjct:   32 VGDVKDKWKLLPYFLQLRGLVKQHIDSFNYFTNVDMKNIVRAKANNMVRSDADPKFFLQYTDIQIGSPSIDEEAFVSSSVTPHQCRLRDRTYAAPVYVSVRYRRGNKIVTNNKVLIGRIPIMLRSANCVLTEKGEAELAKLKECPYDPGGYFIVKGVEKVVLIHEQLSKNRVIIEEDAKQNVCASITSSTHERKSRTNIFINKNRVYLKSNSFGSDIPIVIVFRGMGMESDQEIVSLIGSEPDVTDALTASFEEASDLKVFTQLQALEYIGSKMNAVTKVGATGGRHRGXXXXXXXXQDRSLADAARSALANLVLNHVPCEDYNFRLKCIYVAHIVRRIIFTDKDRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRAAVFDILKCIR-TDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEEAAPIKRLCFDLGVTDVSLSSGEEINHSSNYLVVLNGVIIGTHVNPRAFVTRLRRIRRAGLIGEFVSVMMHDVQRVVYIASDGGRVCRPLLLIDPVTHKTRLTQRHLDELRAGVRDLHSLIVEGCVEYVDVNEENNCLVALHESEIGERTTHLEIDPVTILGVVSGLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQYERIDTLLYTMVYPQMPMVKTRVLDLVNFDHVPAGQNATVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIKKYANGSYDRIVGPPDFDSLVSNGGGGAGNMGFRNAKYASLDADGIARVGGVVQNGAIMINKEQPTQFNDSVDGRDPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIRQTRRPEIGDKFSSRHGQKGVCGTIRNQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLNGRRAYGTAFGEKYGTADNVLDCSRELVKNGFNYAGKDYLTSGITGEPILCYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLMERLMISSDAFSADVCQGCRMLGYEGWCQYCKSEEKVVSIRIPYACKLLFQELQAMNIVPRLTLKEY 1178          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: A0A024TUJ8_9STRA (DNA-directed RNA polymerase subunit beta n=12 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TUJ8_9STRA)

HSP 1 Score: 1496 bits (3873), Expect = 0.000e+0
Identity = 748/1156 (64.71%), Postives = 912/1156 (78.89%), Query Frame = 0
Query:   48 AAMAESEEEEEDGHEQVRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQPTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEHG--RTRLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLSLGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKVRASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPAS-----TSGIYGPGQSDFVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLEDF 1196
            AA++  ++ +EDG      VK KW+LLP+FL+LRGL++QHIDS+DYF  VD+ KIV+A+ N  + SD DPKFFL YT I +GTP IDED Y    +TP QCRLRD TYSAP++V+V+Y  G ++V K+ + IGRIP+ML S KCVL  K E+ LA +KECPYDPGGYFVVKG EKV+L+ EQLSKNRVI+E D K+N+ A+ITSSTHERKSR NI +  G+VY+K NS  DD+PIV++ R MG +SDQEIV L+G E ++ + F ASLEEA  + V+T+ QAL+YIG+KM++  + G+           Q   D A D L  ++L+H+P   ++FR K IY AHIVRRV++T  D + +DDKDYYGNKRLELAGQL+SLLFEDLFK+FNS+LKR ADMVL+KPNRA  FDI K +  + TIT+GF H +STGNW LKRF++DR GVT VLSRLSF+S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNLALL HVTSD+E  P+ RLC+DLGV DV   SG E+N   + LV LNG I+GT   P V  S++R +RR G++GEFVSV LH V+R VYIASDGGRVCRPLL+V+    + RLTQ  + ++  GV ++  LIK+GVVEYVDVNEENNCLVAL   D+ +  THLEIDP+T+LGVV+GLIPYPHHNQSPRNTYQCAMGKQA+GT  +N  ER+D LLY +V+PQ PMV TRVLDLV+FDQVP GQNA++AVMSYSGYDIEDA+VLN+ SLDRGFGRCMVF+K+Q  +++YPN T D+IVG       P   E S  R +RY  LD DGICRVG +   G IMVNK SPA+     TS +     S    +P+SYK     Y+DKV+LT++E++ +LIK+L+RQTRRPE+GDKFSSRHGQKGVCG I  QEDMPF D G+CPDLIMNPHGFPSRMTVGKM+ELVAGKAGVL G +A+GTAFGE++G+ADRV  C + LV  G++Y GKD LTSG  GEP++ YIF GP++YQKLKHMVMDKMHARARGPRAVLTRQPTEGR+RDGGLRLGEMERDCLIGYGAS L++ERLM+SSDAFTANVCQGC +LGY GWCQ C+S EK+ DIR+PYACKLLFQELQ+MNI PRL L+++
Sbjct:   49 AALSSEDQAKEDGF-----VKNKWQLLPYFLQLRGLVKQHIDSFDYFTEVDMKKIVRAQANNTIRSDHDPKFFLTYTDINIGTPSIDEDAYVTTAVTPNQCRLRDRTYSAPIYVSVKYRLGPKVVTKNKVLIGRIPIMLRSAKCVLKDKDEAALAALKECPYDPGGYFVVKGSEKVVLIHEQLSKNRVILEEDPKRNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFVDDLPIVIVFRGMGLVSDQEIVSLIGCEADVTDHFAASLEEASDLKVFTQTQALTYIGNKMKS--RGGS-----------QKVTDAALDALV-MVLNHIPCEDFNFRMKCIYVAHIVRRVILTDKDRSRLDDKDYYGNKRLELAGQLLSLLFEDLFKKFNSDLKRQADMVLNKPNRATVFDIIKCIR-TDTITYGFIHCLSTGNWTLKRFRMDRAGVTHVLSRLSFMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEEPEPIRRLCFDLGVNDVCLSSGEEINHPTTYLVMLNGIIIGTHVDPKVFVSRLRRIRRAGLLGEFVSVMLHDVQRVVYIASDGGRVCRPLLLVDAATQKPRLTQRQITELQTGVRTISSLIKEGVVEYVDVNEENNCLVALHERDIDVKTTHLEIDPVTILGVVSGLIPYPHHNQSPRNTYQCAMGKQAIGTIGMNQFERIDTLLYTMVYPQAPMVKTRVLDLVNFDQVPAGQNATVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTVVKRYPNNTYDRIVG-------PPDFEGSSFRNQRYASLDADGICRVGGQVVSGGIMVNKESPANVDISITSEVQDVSYSP---SPVSYKNATPGYIDKVMLTSSESDQFLIKVLVRQTRRPEIGDKFSSRHGQKGVCGTIRNQEDMPFNDLGMCPDLIMNPHGFPSRMTVGKMIELVAGKAGVLSGRRAFGTAFGEDYGTADRVLDCSKELVSHGFNYAGKDYLTSGVTGEPILCYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIGYGASMLLLERLMLSSDAFTANVCQGCQMLGYEGWCQYCKSEEKVVDIRIPYACKLLFQELQAMNIAPRLTLQEY 1174          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: A0A7S4I9T1_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I9T1_9STRA)

HSP 1 Score: 1486 bits (3848), Expect = 0.000e+0
Identity = 743/1158 (64.16%), Postives = 897/1158 (77.46%), Query Frame = 0
Query:   64 VRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQPT--FRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEHGRT--RLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLS-----------LGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKVRASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPASTS----GIYGPGQS-------DFVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLED 1195
            V  +KEKW+LLPHFLKLRGLM+QHIDS+DYFVN+++ +IVQ+    E+ S+ DPKF+L+YT   VG P ++ED Y     +PFQCRLRDCTYSAP++VNVRYTRGRQIV K  + +GR+P+ML S KC+L GK+E ELA ++ECPYDPGGYFV+KGVEKVILMQEQLSKNRVI+E D K  + A+ITSSTHERKS+  I VK+G+VYM+ N+LGDD+PI V  +AMG  SD EIVQ VGSEPEI++A   S+EE   +G+YTE QAL YIG+K+RA      RV  Q    FRK  S +DEARD+L  V+LSHVPV  +DFRAK +Y  HIVRRVL+       +DDKDYYGNKR+ELAG L+SLLFEDLFK FN +L+R AD VLSKPNRA AFD+ K +     IT G   AIS+GNWVLKRF++DR GVTQVLSRLS++S++GMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNLALLAH+T+D++TGP+ RLC D+G +DV  L+G E N   + LV LNG +VG    P      +R +RR GM GEFVSVYLH  +RAV+IA+DGGRVCRPL++V+      RL Q H++ +A+G + ++DL++QGVVEYVDVNEENNCL+A+T  +L            + +THLEIDP+T+LGVV+GL+ YPHHNQSPRNTY CAMGKQA+G   LN + R+DGL+Y +V+P KPMV +R LDLV+FDQVPGGQNA IA+M+YSGYDIEDAVVLN+ S+DRGFGRCMV RKHQ  IR+Y N T D+  G      FP G +  D R+ R+  +D DGIC VG   + G++MVNK SP  TS    G +GP  +        +    MSY++ A SYVDKV++T+NENE +LIK++LRQ RRPEVGDKF+SRHGQKGVCGIIVPQ DMPF + GICPDLIMNPHGFPSRMTVGK++EL+ GK GV  G QA  TAFGEEFGSAD      + L+  G +Y GKD+  SG  GEPL  YIF+GPVFY KLKHMV+DKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI YGAS LIMERLM SSDAF+ANVC  CGLL Y  WCQ CRS E ++DIRLPYACKLLFQELQSMN++PRL+L+D
Sbjct:  296 VGSLKEKWRLLPHFLKLRGLMKQHIDSFDYFVNIEMKQIVQSPSACEIRSEHDPKFYLRYTDCWVGEPSVEEDSYAFTQASPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVVVGRMPIMLRSSKCLLKGKTERELAKLRECPYDPGGYFVIKGVEKVILMQEQLSKNRVILEIDGKGLVQASITSSTHERKSKAYILVKHGRVYMRSNTLGDDIPIAVAFKAMGMESDLEIVQTVGSEPEIMDALALSMEEPVKLGIYTETQALKYIGNKIRA------RVAPQGFGGFRKTASLQDEARDVLANVVLSHVPVPNFDFRAKAMYVGHIVRRVLLVHTGKMPLDDKDYYGNKRIELAGSLLSLLFEDLFKIFNKDLQREADRVLSKPNRAQAFDVVKTIRPDI-ITGGMQSAISSGNWVLKRFRMDRAGVTQVLSRLSYMSAIGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTGPIERLCRDMGTQDVTMLTGNETNANGAYLVLLNGLVVGAHTRPWRFVRDLRRMRRGGMAGEFVSVYLHEGQRAVHIATDGGRVCRPLVIVDERTALPRLKQCHVEGLAVGAVDMRDLLRQGVVEYVDVNEENNCLIAVTERELEQARKVGLDKQKMRYTHLEIDPVTILGVVSGLVAYPHHNQSPRNTYTCAMGKQAIGCIGLNEYARMDGLIYTMVYPHKPMVKSRTLDLVNFDQVPGGQNACIAIMAYSGYDIEDAVVLNKASIDRGFGRCMVLRKHQTSIRRYANMTMDRTCGPPDPDAFPDGED--DKRYARFRGIDRDGICMVGEHMENGSVMVNKESPTDTSTGVGGGFGPDGAAAAVANISYKYTGMSYRSSAPSYVDKVLITSNENEQFLIKVMLRQVRRPEVGDKFASRHGQKGVCGIIVPQVDMPFNEDGICPDLIMNPHGFPSRMTVGKLIELLVGKCGVFEGRQALSTAFGEEFGSADTPDAAAEVLIRNGLNYFGKDVYYSGASGEPLDAYIFSGPVFYMKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSANVCMTCGLLQYQNWCQYCRSGEGVADIRLPYACKLLFQELQSMNVLPRLRLKD 1444          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 1478 bits (3827), Expect = 0.000e+0
Identity = 737/1159 (63.59%), Postives = 896/1159 (77.31%), Query Frame = 0
Query:   64 VRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQPTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEHGRT--RLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLS-----------LGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKVRASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPASTSGIYGPG-----------QSDFVSAPMSYKAPAES--YVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLEDF 1196
            V  +++KW+LLPHFLKLRGLM QHIDSY++FVN D+  IVQA    E+ S+ DP+F+L+YT   VG P ++ED Y     TPFQCRLRDCTYSAP++V+VRYTRGRQIV K  I IGR+P+ML S KC+LTGK+  +LA MKECP+DPGGYFVVKGVEKVIL+ EQLSKNRVIIE DAKK ISA+ITSSTHERKS+  I++  GK+++K N   +DVPI ++++AMG  SD EIVQLVGS+PEIV+A   SLEE   +G+YT+ Q L YIG K+R+    G    +  +++KPQ+PEDEARD+L  V+LSHVPV+ ++FR K IY  HIV RV+M  +    +DDKDYYGNKRLELAG  +SLLFEDLFK FN+ LKR AD VL   NRA AFD+ K +   T IT+G  HAIS+GNWVLKRF+VDR GVTQVLSRLS+IS+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNLALLAH+T+D++T P+ RLC DLGVEDV  L+G E+N + + LVFLNG ++G    P      +R +RR+G  GEFVSVYLH  + AV+IA+DGGRVCRPL++V+      RL Q H++ +A+G + +++L++ GVVEY+DVNEENNCL+A+T  DL            + +THLEIDP T+LGVVAGLIP PHHNQSPRNTYQ AMGKQA+G   +N + R+DGL+Y +V+P KPMV TR LDL+HFD +P GQNA IAVMSYSGYDIEDAVVLN+ S+DRGFGRCM+ RKHQ  IR Y N T D+  G    S FP G   +D R+++Y+ +D+DGIC VG +   GTIMVNK SP  TS   G             Q ++  + MSYK+ A+   +VDKV++++NENE +LIK++ RQTRRPEVGDKF+SRHGQKGVCG+IVPQ DMPF + G  PDLIMNPHGFPSRMTVGK++EL+ GKAGV  G QAY +AFGEEFGS D      + L+  G +Y GKD   SG  GEPL  YIF+GPVFYQKLKHMV+DKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI YG S LIMERLM SSDAF+ANVC  CGLL Y  WCQ+CRS EK++DIRLPYACKLLFQELQSMN++PRL+L+DF
Sbjct:  215 VGSLRDKWRLLPHFLKLRGLMTQHIDSYNHFVNTDMKLIVQAPSACEIRSEHDPRFYLRYTNCWVGEPSVEEDSYASTQATPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKRKIMIGRLPIMLRSSKCLLTGKTHRQLARMKECPHDPGGYFVVKGVEKVILIHEQLSKNRVIIEEDAKKCISASITSSTHERKSKAYIYINKGKIFLKSNIFAEDVPIAIVIKAMGVESDLEIVQLVGSDPEIVDALAISLEEPNKLGLYTQLQCLRYIGGKIRSRVSGGPFAAK--SWKKPQAPEDEARDVLANVVLSHVPVINFNFRPKCIYIGHIVLRVVMVHMGKCQLDDKDYYGNKRLELAGNFMSLLFEDLFKLFNANLKREADRVLRHTNRAQAFDVVKIIRPDT-ITNGMVHAISSGNWVLKRFRVDRAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTAPIERLCIDLGVEDVNMLTGNEINSMGAYLVFLNGLLLGAHTRPRQFVQDLRTMRRQGQAGEFVSVYLHEGQHAVHIATDGGRVCRPLIIVDEKTALPRLKQVHVEGLAVGAIDIKNLLRHGVVEYIDVNEENNCLIAVTERDLEVARKSGLDKRKMAYTHLEIDPSTILGVVAGLIPNPHHNQSPRNTYQSAMGKQAIGAIGMNQYSRMDGLIYTMVYPMKPMVKTRTLDLIHFDSLPAGQNACIAVMSYSGYDIEDAVVLNKASIDRGFGRCMILRKHQTSIRTYANRTMDRSCGPPDPSAFPDGE--NDKRYEKYKAIDKDGICMVGEQLDSGTIMVNKESPTDTSTNIGGAEFLAGNMAALSQVNYKYSGMSYKSAAKVPVFVDKVLISSNENEQFLIKVMTRQTRRPEVGDKFASRHGQKGVCGLIVPQPDMPFNEFGHPPDLIMNPHGFPSRMTVGKLIELLVGKAGVYEGRQAYASAFGEEFGSTDTPSSASEILIHNGLNYFGKDCFYSGANGEPLDAYIFSGPVFYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLIMERLMHSSDAFSANVCLTCGLLQYQNWCQHCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLKDF 1368          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: B7FVD4_PHATC (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVD4_PHATC)

HSP 1 Score: 1473 bits (3814), Expect = 0.000e+0
Identity = 729/1157 (63.01%), Postives = 912/1157 (78.82%), Query Frame = 0
Query:   64 VRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQPTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQ-ETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVV--EHGRTRLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLSLG-----------HTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKVRASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPASTS----GI---YGPGQS----DFVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLED 1195
            V  +++KW+LLP+FL+LR L+RQHIDS+D+FV+V++ +IVQ+    E+ S+ DPKF+L+Y    VG P ++ED Y+VK+ TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IGR+P+ML S KC+L  +SE +LA MKECPYDPGGYFV+KGVEKVIL+QEQLSKNRVI+E D  K I A+ITSSTHERKS+  I +KNG+VY+K+N+LGDD+P+ V+L+AMG  SD E+VQLVGSE  I+NA   SLEE   +G++T+ QAL +IG K+R   ++G       ++RK  SPEDEAR++L  V+LSHVPV  +DFR K +Y  HIVRRVL+  +    +DDKDYYGNKRLELAG L+SLLFEDLFK FN +LKR AD+VLSKPNR  AFD+ K +   T IT+G  +AI+TGNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNLALL H+T+D+ +T P+ R+C DLGVEDV R++G E+N   + LVFLNG I+G    P  L   +R +RR+G+ GEFVSVYLH  + AV+IA+DGGRVCRPLL+V  E G  +L Q HM+ +ALG + + DL++QG+VEYVD NEENN L+A+T  DL +            +THLE+DP T+LGVV G+IP+PHHNQSPRNTY  AM KQAMG+ ++N +ER+DGL+Y L++PQKPMV +R LDLV+FD +PGG NA IAVMSYSGYDIEDA++LN+ ++DRGFGRCMV RKHQ  +R+Y NGT D+         FP G +  D R+ RY  +D+DGICRVG + + G++MVNK SPA T+    G+   +  G S    ++  + +SY+  A +YVDKV++T+NENE +LIK++LRQ RRPE+GDKF+SRHGQKGVCG+IVP+ED+PF + G  PDLIMNPHGFPSRMTVGK++EL+ GKAG+  G Q Y +AFGEEFGSAD      +AL+  G +Y GKD+L SGT GEPL  YIF+GPVFYQKLKHMV+DK HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI YG S LIMERLM SSDAF+ANVC  CGLL Y GWCQ CRS EK++DIRLPYACKLLFQELQSMN++PRL+L+D
Sbjct:   61 VGSLRDKWRLLPYFLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSEHDPKFYLRYEACWVGEPSVEEDSYSVKSATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVMIGRMPIMLRSKKCLLRDRSEDDLAGMKECPYDPGGYFVIKGVEKVILIQEQLSKNRVILEED-NKGIMASITSSTHERKSKAYILIKNGRVYLKNNTLGDDIPVAVVLKAMGIESDLELVQLVGSESPIINALALSLEEPSRLGIHTQAQALRFIGAKIRG--RSGPSGPSS-SYRKNVSPEDEAREVLANVVLSHVPVTHFDFREKALYIGHIVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKIFNKDLKRQADLVLSKPNRTQAFDVVKTIRPDT-ITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADTRPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRNLRKMRRRGLAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIVDEETGLPKLQQIHMESLALGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAILHGLETRKMRYTHLEVDPFTILGVVGGIIPFPHHNQSPRNTYTVAMAKQAMGSVSMNQYERMDGLIYTLIYPQKPMVKSRTLDLVNFDNIPGGHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQTSVRRYANGTMDRTCAPPDPGSFPDGED--DKRFARYMAIDKDGICRVGEKIENGSVMVNKESPADTTSNMAGVDFGFNSGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQFLIKVMLRQVRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGFPSRMTVGKLLELLVGKAGLYEGRQGYSSAFGEEFGSADTAQSASEALLRNGLNYTGKDILYSGTNGEPLDAYIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLIMERLMHSSDAFSANVCLTCGLLQYEGWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLQD 1210          
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Match: A0A1E7EUM7_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM7_9STRA)

HSP 1 Score: 1469 bits (3803), Expect = 0.000e+0
Identity = 726/1156 (62.80%), Postives = 898/1156 (77.68%), Query Frame = 0
Query:   64 VRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESELADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAITSSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQLVGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQPTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTVIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNGSIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVEHGRT--RLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLVALTAVDLSLG-----------HTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGKVRASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPASTSGIYG-----------PGQSDFVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLED 1195
            +  +K+KW+LLPHFLK+R LMRQHIDS+DY VNV++ +IVQ+   RE+ S+ DP F+L+YT   +G P ++ED Y V T TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IG++P+ML S KC+L GKSE +LA MKECPYDPGGYFVVKGVEKVIL+QEQLSKNRVI+E D K  I A+ITSSTHERKS+  I +K+GKVY+K+N LG+D+PI ++L+AMG  SD E VQLVGSE  IV A   SLEEA  VG++T+ QAL YIG K+R         R   ++RKP  PEDEAR+IL  V+LSHVPV  +DFRAK IY  HI RRVL+  +   ++DDKDYYGNKRLELAG L+SLLFEDLFK F+ +LKR ADMVLSKPNRA A+D+ K +   T IT+G  +AI+TGNWVLKRF++DR GVTQVLSRLSF+S LGMMTR++SQF+K RKVSGPR+LQ SQWGMLCPADTPEGE+CGLVKNLALLAH+T+D++T P+ RLC DLGVEDV RLSG E+N   + LV LNG I+G    P      +R LRR+G+ GEFVS YL+  +RAV+IA+DGGRVCRPL++V+   +  +L Q+H++ +ALG + ++ L+++G+VEYVD NEENN L+ALT  DL +            +THLEIDP T+LGV+ G+IPYPHHNQ+PRNTY  AM KQAMGT  +N +ER+DGL+Y LV+PQKP+V +R LDLV FD +P GQNA IAVMS+SGYDIEDA++L++  +DRG+GRCMV RKHQ  +++YPNG+ D+  G    S F  G +  D R+ RY+ +D+DGIC VG + +PGTIMVNK SPA+T+G  G              + +  + MS+K  A  +VDKV++++NE+E +LIK++LRQ RRPE+GDKF+SRHGQKGVCG+IV QED+PF + G  PDLIMNPHGFPSRMTVGK++EL+ GK+G   G Q Y +AFGEE GSAD      +AL+  G +Y GKD   SG  GEPL  Y+F+GPVFYQKLKHMV+DK HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI YGA+ LIMERLM SSDAF+ANVC  CGLL Y  WCQ CRS EK++DIRLPYACKLLFQELQSMN++PRL+L+D
Sbjct:   82 IGSIKDKWRLLPHFLKIRSLMRQHIDSFDYLVNVELKQIVQSPSAREIRSEHDPNFYLRYTDCWLGEPSLEEDSYAVSTATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKCILNGKSEQDLARMKECPYDPGGYFVVKGVEKVILIQEQLSKNRVILEKDNKGEICASITSSTHERKSKAYISMKHGKVYLKNNVLGEDIPIAIVLKAMGIESDVEAVQLVGSESYIVAALAMSLEEASKVGIHTQLQALKYIGSKIR---------RNTNSYRKPMPPEDEAREILDRVVLSHVPVHQFDFRAKAIYVGHITRRVLLVHLGKMSLDDKDYYGNKRLELAGNLLSLLFEDLFKLFSKDLKRQADMVLSKPNRAQAYDVVKSIRPDT-ITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSFMSCLGMMTRINSQFEKTRKVSGPRSLQASQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTQPIERLCRDLGVEDVLRLSGHEINSHQAYLVLLNGLILGVHTRPIKFVKNLRSLRRRGLTGEFVSFYLNKEQRAVHIATDGGRVCRPLIIVDDNTSLPKLKQSHVEALALGTIDIRYLLQKGIVEYVDCNEENNTLIALTEKDLEIARKQGVENLRMRYTHLEIDPFTILGVIGGIIPYPHHNQAPRNTYTVAMSKQAMGTIGVNAYERMDGLIYTLVYPQKPLVKSRTLDLVGFDNIPAGQNAVIAVMSFSGYDIEDAIILSKSGIDRGYGRCMVLRKHQTSVKRYPNGSIDRTCGPPDVSNFTDGED--DKRYARYKAIDQDGICMVGEKVEPGTIMVNKESPANTTGDIGGADLGLNMGMSAASTQYKPSGMSFKGQAPCHVDKVLISSNEHEQFLIKVMLRQVRRPEIGDKFASRHGQKGVCGLIVQQEDLPFNELGHTPDLIMNPHGFPSRMTVGKLLELLVGKSGTYDGRQGYSSAFGEEHGSADTAEATSEALIRNGLNYTGKDTYYSGFSGEPLDAYVFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGAANLIMERLMHSSDAFSANVCLTCGLLQYENWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLQD 1225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig247.6697.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z565_9STRA0.000e+070.56DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
I2CNY0_NANGC0.000e+066.95DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A6U4JF41_9STRA0.000e+066.99DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S2WH87_9STRA0.000e+065.46DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
K3X1L2_GLOUD0.000e+065.16DNA-directed RNA polymerase subunit beta n=32 Tax=... [more]
A0A024TUJ8_9STRA0.000e+064.71DNA-directed RNA polymerase subunit beta n=12 Tax=... [more]
A0A7S4I9T1_9STRA0.000e+064.16DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
A0A7S4QYU8_9STRA0.000e+063.59DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]
B7FVD4_PHATC0.000e+063.01DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A1E7EUM7_9STRA0.000e+062.80DNA-directed RNA polymerase subunit beta n=1 Tax=F... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 679..718
e-value: 3.9E-9
score: 36.9
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 1108..1193
e-value: 1.7E-31
score: 108.4
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 756..950
e-value: 3.2E-143
score: 479.1
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 725..1106
e-value: 6.0E-120
score: 400.9
NoneNo IPR availableGENE3D3.90.1100.10coord: 75..234
e-value: 8.9E-11
score: 43.3
NoneNo IPR availableGENE3D3.90.1800.10coord: 1094..1195
e-value: 2.4E-37
score: 129.0
NoneNo IPR availableGENE3D3.90.1070.20coord: 563..645
e-value: 1.8E-8
score: 36.0
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 67..1195
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 68..1195
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 726..1092
e-value: 3.2E-143
score: 479.1
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 235..408
e-value: 1.3E-37
score: 131.1
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 232..418
e-value: 3.1E-23
score: 82.4
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 596..657
e-value: 5.2E-21
score: 74.7
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 495..559
e-value: 8.3E-21
score: 73.9
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 82..453
e-value: 6.4E-51
score: 173.3
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 67..1195
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 954..966

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig247contigH-paniculata_contig247:883..27587 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig247.6697.1mRNA_H-paniculata_contig247.6697.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig247 155..27798 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig247.6697.1 ID=prot_H-paniculata_contig247.6697.1|Name=mRNA_H-paniculata_contig247.6697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1197bp
MLKGANKDLAFLTDVLGERGRDLSAEGRRRATEGGLRKYRDVYGDKMAAM
AESEEEEEDGHEQVRGVKEKWKLLPHFLKLRGLMRQHIDSYDYFVNVDIS
KIVQAKGNREVLSDVDPKFFLQYTKITVGTPCIDEDDYTVKTITPFQCRL
RDCTYSAPLWVNVRYTRGRQIVNKSNINIGRIPVMLLSCKCVLTGKSESE
LADMKECPYDPGGYFVVKGVEKVILMQEQLSKNRVIIEFDAKKNISAAIT
SSTHERKSRCNIHVKNGKVYMKHNSLGDDVPIVVILRAMGAMSDQEIVQL
VGSEPEIVNAFMASLEEAQAVGVYTEKQALSYIGHKMRAPPKAGARVRQQ
PTFRKPQSPEDEARDILCGVILSHVPVVGYDFRAKIIYTAHIVRRVLMTV
IDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKP
NRAAAFDIGKFLEGSTTITHGFTHAISTGNWVLKRFKVDRQGVTQVLSRL
SFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLV
KNLALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGLNSSLVFLNG
SIVGTTGHPSVLASKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVC
RPLLVVEHGRTRLTQTHMDQMALGVLSLQDLIKQGVVEYVDVNEENNCLV
ALTAVDLSLGHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA
MGTTALNMHERLDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAV
MSYSGYDIEDAVVLNRGSLDRGFGRCMVFRKHQVPIRKYPNGTQDKIVGK
VRASEFPRGSEASDPRWKRYEQLDEDGICRVGSECKPGTIMVNKHSPAST
SGIYGPGQSDFVSAPMSYKAPAESYVDKVVLTANENEDYLIKILLRQTRR
PEVGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTV
GKMVELVAGKAGVLHGHQAYGTAFGEEFGSADRVHLCCQALVERGYSYVG
KDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQP
TEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGL
LGYSGWCQNCRSPEKMSDIRLPYACKLLFQELQSMNIVPRLKLEDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007647RNA_pol_Rpb2_5
IPR007641RNA_pol_Rpb2_7
IPR014724RNA_pol_RPB2_OB-fold
IPR007120DNA-dir_RNAP_su2_dom
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR037034RNA_pol_Rpb2_2_sf
IPR007642RNA_pol_Rpb2_2
IPR007646RNA_pol_Rpb2_4
IPR007645RNA_pol_Rpb2_3
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2
IPR007121RNA_pol_bsu_CS