mRNA_H-paniculata_contig2469.6695.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2469.6695.1
Unique NamemRNA_H-paniculata_contig2469.6695.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A6H5KKC3_9PHAE (LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKC3_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 6.460e-91
Identity = 158/236 (66.95%), Postives = 181/236 (76.69%), Query Frame = 2 
Query:  212 MKSVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQM----------AKK--PAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQP-QPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQRGDPYAG 880
            MK     A++VASA AFVP+AP+      +  A SSSLQM          A K  PA PV+++  AVDGLVG DIETGG FDPLGFG+NCPP+QMQWYRAAELKHGR+CMLAAFGQ  Q +  HWNDPSGIFD+    W AMQQVYEQRP AF+QI LAIFA EV+GNK+QE++  GGDLG+DPLGLKPSNPEAWERVQLRELKNGRLAM AI GMI QE I+G+GVL++ D  AG
Sbjct:    1 MKCATAFALMVASANAFVPSAPLPT---VTSRASSSSLQMIGGFGRKSKPAPKAPPARPVSTN--AVDGLVGADIETGGPFDPLGFGKNCPPQQMQWYRAAELKHGRVCMLAAFGQITQHF-THWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNKRQEENEAGGDLGFDPLGLKPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLAG 230
[Close]
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 193 bits (491), Expect = 4.070e-54
Identity = 117/228 (51.32%), Postives = 145/228 (63.60%), Query Frame = 2 
Query:  215 KSVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQP-QPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQE---QSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQRGDPYAGFV 886
            K+VA LA+V  S +AFV +AP+   V               + A PV   G   +GLVG D+E    +DPLGF  N  P+ + WYRAAELKHGR+ MLAA G+  QSY  H  DP  +F Q  +PW A+QQVY +RPLA  QI LAIFA E  G  QQ    Q+P  GDL WDPL LKPS+PE WE+VQLRELKNGRLAM+AIAG   QE+++G G +++   YAG +
Sbjct:    4 KAVAGLALVAGSVSAFVQHAPLRTGV-------------VSRSAGPVMKLGPGGEGLVGSDLELA-TWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSY-YHLPDP--VFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAP--GDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQ--IYAGHI 210
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BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 177 bits (449), Expect = 4.270e-48
Identity = 108/216 (50.00%), Postives = 136/216 (62.96%), Query Frame = 2 
Query:  218 SVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQP-QPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQ-SPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQ 859
            S AV A++V SA+AF+  A  N               +AK   A     GS+ +GL+G D+E   +FDPLGF  N  P  ++WYRAAELKHGR+ MLAA GQ VQS+  H  DP  +F +  +PW A+ +V  +RPLA VQI LAIFA E  G   Q +     GDLGWDPL L+ SN E +ER QLRELKNGRLAMIAI  MI QE+++G GV++
Sbjct:    4 SAAVAALMVGSASAFLAPAQFNS--------------VAKSSGALSMKLGSSAEGLIGSDLELP-EFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSF-YHLPDP--VFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIE 201
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BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC)

HSP 1 Score: 172 bits (436), Expect = 3.190e-46
Identity = 107/220 (48.64%), Postives = 138/220 (62.73%), Query Frame = 2 
Query:  218 SVAVLAVVVAS-AAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQP-WAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQE---QSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 862
            ++A+LAVV A  A+AFVPNA    + P      + S+++           G+   GL+G D+E   +FDPLGF  N   E ++WYRAAELKHGR+CMLAA GQ VQS+  H  DPSG+FD     + A  +V  +RP A +QI LAIFA EV G K Q    Q+P  GDL +DP  ++  +PE WE  QLRELKNGRLAMI I  M+ QE+ISG GV+ +
Sbjct:    8 TLALLAVVAAEDASAFVPNASPLLKSPKRSLRTTPSMKL-----------GTNAQGLIGSDLEWP-EFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFW-HLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAP--GDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVIAQ 212
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BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.650e-45
Identity = 93/168 (55.36%), Postives = 115/168 (68.45%), Query Frame = 2 
Query:  365 GSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQ-PQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGN-KQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 862
            GS+  GL G DIE   +FDPLGF  N  PE + WYRAAELKHGR+ MLAA GQ VQ +     D SG+F    +P  A+ +V  +RPLA +QI LAIFA E  G   Q +     GDLGWDPL LK  +PE + +VQ RELKNGRLAMIAIAGM+ QE+++GLGV+++
Sbjct:   38 GSSAQGLAGSDIEFP-EFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHF-YTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQ 203
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BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A835Z156_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z156_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.990e-44
Identity = 101/222 (45.50%), Postives = 136/222 (61.26%), Query Frame = 2 
Query:  197 LSPITMKSVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 862
            ++P+T  +VA LA+V A A+AFVP++    +V  +R A SS++QM             + DGLVG  +ETGG +DP         E + WYRAAELKHGR+CMLAA G  VQ Y   W  P  +F   +   A+ Q+Y +RP A  QI LAI A EV G+  Q+ +   GDL WDPLGL P +PE    +QL+ELKNGRLAM+A AG   QE+++G G +++
Sbjct:    1 MAPVT--AVAALALV-AGASAFVPSSFSGAQV--ARVASSSAMQM-------------SADGLVGASVETGGVWDPANLASKASEEDLAWYRAAELKHGRVCMLAAVGCLVQGY---WQLPDPVFSNTKAVDAVAQIYTERPGAIYQILLAIAAIEVLGSSIQKYT-APGDLKWDPLGLAPEDPEELATLQLKELKNGRLAMVATAGFFLQEALTGQGAVEQ 200
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BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 159 bits (401), Expect = 3.160e-41
Identity = 90/189 (47.62%), Postives = 121/189 (64.02%), Query Frame = 2 
Query:  302 RTARSSS--LQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 862
            R +RS S  +QMA  P        S   GLVG DI+    FDPLG  +    E ++WYRAAELKHGR+ MLAA G  VQ+    +  P   F +  P  A+ +++ +RPLA +QI  AI A EV GN+ Q Q+  GGDL WDPLG+KP++PE + ++QLRELKNGRLAMI++ GM AQE+++  G + +
Sbjct:   36 RASRSPSRTMQMALDP--------SFAGGLVGNDIDAP-NFDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNI---YQLPDSPFQEANPINAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDGGDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQ 212
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BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A0G4GRR2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GRR2_9ALVE)

HSP 1 Score: 154 bits (389), Expect = 1.090e-39
Identity = 101/214 (47.20%), Postives = 130/214 (60.75%), Query Frame = 2 
Query:  230 LAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNK-QQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQRGD 868
            L++ V+S  AFVP++  NG + +SR +RS    +  K        G    G+ G D E    FDP+GF +N P E ++WYRAAELKHGR+CMLAA G  V   GI  + P   F+      A+ ++ E+RP A +QI LAIFA E  G K Q E    GGDLG+DPLGLKPS+PE  E  QLRE+KNGRLAMIAI G  AQE ++   ++   D
Sbjct:    8 LSLSVSSCTAFVPSS--NGLL-SSRPSRSGKSSLDMKL-------GRNAVGMPGTDFELP-DFDPIGFTQNAPLETLEWYRAAELKHGRVCMLAALGNIVA--GIT-HLPDTCFEGKGSLGAVYKIMEERPWAGLQIVLAIFAVEALGQKIQSEPGREGGDLGFDPLGLKPSDPELLEATQLREIKNGRLAMIAILGQWAQEYVTNRPIIDFDD 207
[Close]
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: W7TEK9_9STRA (Fucoxanthin chlorophyll a c binding protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEK9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 6.260e-38
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = 2 
Query:  374 VDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 862
            + G+VG D+E   +FDPLG  +N   E + WYRAAELKHGR+CMLA+ G  VQ     ++ P G F+  +P  A+ +V  +RPLA VQI +AI A EV G   Q+ +   GDL +DPLGLKP +PE    +QL+ELKNGRLAM+A AG+ AQE ++G G +++
Sbjct:   53 ISGIVGSDVEVP-EFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGL---YHLPDGPFEASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKYT-APGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQ 210
[Close]
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 149 bits (375), Expect = 1.170e-37
Identity = 91/219 (41.55%), Postives = 130/219 (59.36%), Query Frame = 2 
Query:  206 ITMKSVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 862
            + + S+ ++AV     AAFVP+AP+   +P  R  RS++ +M             +V+ ++G D+ETGG FDPL F  +     +   RA ELKHGRI MLA  G FVQS G+H  DP  +F +P+P +A+ +V  +RP A  QI  AI A E+   +Q  ++   GDLG+     K S+PE + + QLRELKNGRLAMI I GM+ QE ++G  V ++
Sbjct:    4 VAVASLLLIAVAYGEEAAFVPSAPLRS-LPTRRALRSTTPKM-------------SVEEMIGADVETGGVFDPLKFSED--EASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDP--VFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQ 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKC3_9PHAE6.460e-9166.95LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835YT25_9STRA4.070e-5451.32Light harvesting complex protein n=2 Tax=Tribonema... [more]
FCP_CHAMQ4.270e-4850.00Fucoxanthin-chlorophyll a-c binding protein, chlor... [more]
A0A0G4GYX1_VITBC3.190e-4648.64Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
W7TCK1_9STRA1.650e-4555.36Chloroplast light harvesting protein isoform 4 n=2... [more]
A0A835Z156_9STRA3.990e-4445.50Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0G4F0S3_VITBC3.160e-4147.62Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4GRR2_9ALVE1.090e-3947.20Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
W7TEK9_9STRA6.260e-3849.69Fucoxanthin chlorophyll a c binding protein n=3 Ta... [more]
A0A0G4GDB0_VITBC1.170e-3741.55Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2469contigH-paniculata_contig2469:15483..20443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue2.5e-20
Seed eggNOG ortholog159749.K0SJC9
Preferred nameLhca6
KEGG koko:K08908
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CNEI@1,2QVPT@2759,2XHTR@2836
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-15_000490.1
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons5
Model size1903
Cds size678
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.9181924-UTR-H-paniculata_contig2469:15482..156931622929718.9181924-UTR-H-paniculata_contig2469:15482..15693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2469 15483..15693 +
1691480981.1865458-UTR-H-paniculata_contig2469:15482..156931691480981.1865458-UTR-H-paniculata_contig2469:15482..15693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2469 15483..15693 +
1622929719.0048776-UTR-H-paniculata_contig2469:19429..204431622929719.0048776-UTR-H-paniculata_contig2469:19429..20443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2469 19430..20443 +
1691480981.2402112-UTR-H-paniculata_contig2469:19429..204431691480981.2402112-UTR-H-paniculata_contig2469:19429..20443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2469 19430..20443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.9305763-CDS-H-paniculata_contig2469:15693..158031622929718.9305763-CDS-H-paniculata_contig2469:15693..15803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 15694..15803 +
1691480981.1973424-CDS-H-paniculata_contig2469:15693..158031691480981.1973424-CDS-H-paniculata_contig2469:15693..15803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 15694..15803 +
1622929718.9438975-CDS-H-paniculata_contig2469:18009..181531622929718.9438975-CDS-H-paniculata_contig2469:18009..18153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 18010..18153 +
1691480981.205537-CDS-H-paniculata_contig2469:18009..181531691480981.205537-CDS-H-paniculata_contig2469:18009..18153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 18010..18153 +
1622929718.9610002-CDS-H-paniculata_contig2469:18483..186221622929718.9610002-CDS-H-paniculata_contig2469:18483..18622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 18484..18622 +
1691480981.2147331-CDS-H-paniculata_contig2469:18483..186221691480981.2147331-CDS-H-paniculata_contig2469:18483..18622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 18484..18622 +
1622929718.9751537-CDS-H-paniculata_contig2469:18868..189991622929718.9751537-CDS-H-paniculata_contig2469:18868..18999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 18869..18999 +
1691480981.2230127-CDS-H-paniculata_contig2469:18868..189991691480981.2230127-CDS-H-paniculata_contig2469:18868..18999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 18869..18999 +
1622929718.9899395-CDS-H-paniculata_contig2469:19275..194291622929718.9899395-CDS-H-paniculata_contig2469:19275..19429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 19276..19429 +
1691480981.2312894-CDS-H-paniculata_contig2469:19275..194291691480981.2312894-CDS-H-paniculata_contig2469:19275..19429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 19276..19429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2469.6695.1prot_H-paniculata_contig2469.6695.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2469 15694..19429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2469.6695.1

>prot_H-paniculata_contig2469.6695.1 ID=prot_H-paniculata_contig2469.6695.1|Name=mRNA_H-paniculata_contig2469.6695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
MKSVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVAS
SGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLA
AFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAA
EVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAI
AGMIAQESISGLGVLQRGDPYAGFV*
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mRNA from alignment at H-paniculata_contig2469:15483..20443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2469.6695.1 ID=mRNA_H-paniculata_contig2469.6695.1|Name=mRNA_H-paniculata_contig2469.6695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4961bp|location=Sequence derived from alignment at H-paniculata_contig2469:15483..20443+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGTCAATTCCCATAGTCGATTTGTACTAAAATCGCCTATAGAATTA
AGGCGTTCCCCTTAATCTGCCTGTTTCAGCAGAGGCATCTCCCGTGTGTC
GTTTCTTCATCCGCACAGAAACAGAGCGAGTGCCCGAGTAACCATAAGCT
GTTGAGCTCAGTCATCCCCCTGGAGATTATTCAAACGCCTTACTCTCTTT
CTCCAATCACGATGAAGTCTGTGGCTGTTCTCGCTGTGGTGGTGGCGTCT
GCTGCCGCGTTCGTACCGAATGCTCCCATCAACGGAAGGGTGCCCGCGTC
CCGCACCGCGAGGTCCTCCAGGTGAGAGGAGGCTGTGTACATCAGGCGAA
TTGGATGTATTCACAAGAGAAAGGGTTACAGGTGAAGTAGCCGGATGGAC
AGCGAGCCAAATATGCAAAGTACGGCTGCGAAGGCCCGTCAGAGAGACTT
CACTACTTTCCGGATACGCCTGGGGTGTCGTGGCGGTACTGCTGAAACAT
GCGTTGGGCTGCTGGGTGTGAATATCGCGATGCGTGTCAGTTAGTGAAAG
GCCCAACTTATAAAAGTAGCACTTGTTCTGGGATTGGGTTTGAGTTTCAG
GTTGCACAACACGAAACCCCGTCTTGCTCTTAATACCGTCCATGTTCAGT
GGACGGTACAGCAACACACACACTGAGGTGAATCCTGCTTCGCGCTTGCT
ACCTTGGAGCTCGCAATTGAGTTGTGTACGTCATGCACAAGGTCATGTAC
AGTAGGAAACATGATTCAAGTAAACTGAAAGAGACCAGACCCCTGATGTA
GAGAGGAGTCCAGCTTGACAGCTCTTGCATGCCAAGTAGCGAAATATGAG
GTTAGTGGACGTGGATTGCTATTCGAGCGAAGACACGGCTGTAGAGATTA
GCTCGCTTCCGTGGCATGCACACCGCGAAGTTACTCGGGTGCTAGTGTCT
GATATATCCTGTCTAGTCTTAGTGATATATCCGGATTTCCGGAAACTTGT
GGTAAAAGAGCAAGTGACATGCTCGCCATTTTTCTCTGACGTGTCCGGCA
AATGATGGCTCCCTCCATGAGCGGTGGACAATATAGAATCCAGAAACATT
AGCTGCGCTCATGTGCCCATGTCCTTCCTGGACAGGTTTCTCGCCCAATC
TCTATTTTGCGGTATCCTGATCAGCTGTGAACAGTCGTCTGCAGTGAAGT
CACCATACCAATGTATAAGGGAGTGTAAGACTTGGTGCGGACCTGAGATG
TTGTAATACTCACTCCTACACTGATCTATTTCGGAAGATAGTGAAGTGAA
GTCGACGTGGGCTAGGTCGGTATGGGGAGCAATCGATTCTCCTATTTGTT
GATCAGGCTTTACCCCACCTTGGGGAAGTGCAGAAGCGTGCTTGCGCTCT
TGGCTTTAAGGGACGGAAAAAAGCTTACCGTAGGAAGTACATGATCTGGA
GTCATTCGCCGCAACAGACGTGAAGCTTCTCGAAACTGATGCACTTTATT
TGGTTGGTGAATCGAGCGATCCGCAGTGACTTTAATGGTCCATTGAACAC
ATCTGGGTAGCATGTCGGTGAGAGCGAGTCTTCCGTGAGCAAAATCTTCA
CAAGTGATACTCCCAAGAGCGAACGAGCTCGTTTGCACAGATTATTCAAC
AAGTCGATGCGAAGCCGAAGTTAGCCAGGACGGATGGTGTGGGTGGCCCA
TTATCGTTTTACAACCGGTGAAGGACATGAATAATATTCGGTTGGGTCTC
GATTGGATGCGCACGTCTGCAGAACACTCATGGACGAGACCGTCAGCATT
CATTATCCATGTCACATGAAGATTTTTAGGCTCCATACTTCGGACAAAGC
AATGCTTTCCGAAAACTTGGCTGCAGTTGTACCCACTCCGTGTCATCATC
ATGATAGACTAAACCGCGATCTTTACACCCGATGTTTGCCCACCCCCGAT
GAACAGAAGAAAATGCTAAGTCATGTACACAAACGCAAGTGTATACAAAG
GAAGATATTAAGTGTGTCGACTCGAAGCTACATACGATTTTTCTCCCGTT
AGGTTCACTTTTTATGCCACTAAGTTGTTCTGTGCGGAGGTGTAGCGCAA
AAAGTGATGAAAATCCATTTGCTAGGAGATGAGACAAACATCGACCTGAT
CTGGTAGGAAATCGATCAATTCCCTTCATGAAGGTTCACATGAAAATTCG
AGCATTGGTACTTGATCTATTTTGGAGTCACCCTTGAAGTTGCTCCTCGA
ATAGTCTACTCGATTGTACATCGGGAGGAGTGGACGTATTCGCAGTAGTT
TCCGTTCCAAATGCTTTTGACAGCTCGTCGAATGTCGCACTTAAAATGGA
ATTAGACTTGACTGGAATCTGCCAGTTCTAACCTGTTCGCAGCACTACCT
GATTTGTTGGAAGTTCGAAAGCCACTATTTTTTCATGAAACATATGTTTC
CTAATTCCGCCAATGATGCAGCAAATTCGTTTACTCGACATCCCCTCTCT
TTTCGTCGTATCCGTTGATGTGTTTAGTCTACAAATGGCGAAGAAGCCAG
CTGCCCCCGTGGCGTCGTCGGGCAGTGCGGTAGATGGCCTGGTTGGCTTC
GACATTGAGACAGGCGGCCAATTCGACCCCCTTGGCTTCGGCCGCAACTG
CCCCCCGGAGCAAATGCAGTGGTGAGAAGGGGCCTTAACTAGGGTTGCAG
GCGTTTCGAGTACGAATTAAATCACGAAGTCCCATGCCGGATTATCATCG
TTGACACCGATGTCAGAAAACGACTTGTTGGTTTCATTGCACATCACACG
ATTAGTCATGGGTTCGATTTTAACTCCTCGATGAGGACGAGATTGTCTTC
GATGACCGCATCTAAGGTCGACTTCAGCCCCGTCCCTTCCTGCGGCAACG
TCTTCGCTCGTAAATCTGATGTGACTTGTAAGGTGAAAGTTCACGCAAAC
TGATTTTCCATATCTCCCCCTTCATCAATACCAAATTATTACTCATTCAA
GGTACCGCGCGGCGGAGCTCAAGCACGGACGCATCTGCATGCTTGCCGCG
TTTGGGCAATTCGTACAGTCGTACGGAATCCACTGGAATGACCCTTCCGG
AATCTTCGACCAGCCTCAGCCATGGGCTGCCATGCAGCAGGTACACACTC
GAATCCACTCATAATGTTTGCATATGCCTGTATGATGATTGACAATGGTG
AACTACAGGTCTGCCGTGCTGATCCATTTAATGACTTGGAAGTTCAATAG
TAGAGATGGCCAGTTGTGATCAACGAAGTGTGTGAAGCAAGTGCGACACT
TGGGTTTCGCATCCAGATGAGGATGAAGTATACAACTCCTTTCCGACACA
CATCCCCCGTGTTGCTGTTGACGTACCATTATACAGGTGTACGAGCAGCG
CCCGTTGGCCTTCGTGCAAATCTTCCTCGCTATATTCGCGGCTGAGGTGT
GGGGAAACAAGCAGCAGGAGCAGTCTCCGCTAGGCGGGGACCTTGGCTGG
GACCCCCTTGGGCTCAAGTGAGTTTTGTGTTGCCTGGAGTTGTTATTTGA
GCCGAAACTGGGTGAATCTTCATGATGGAATGTGGTGGATGGGTGTGCAA
GTGGTTCTAATCAAATTATTCACCTAATGTCCTGGATTTGTTATACACGG
AAGCAAATTTTGCAAATTCGAAATTAATTTCAATTTGCTCGGCTGGCATG
AGCCAGGCTGGAGTAATAGCACATAACCTTACAAAGCATGCTCTACCGTT
GTATTGTTCCCTCAATCGTGTTCGCCGGTGCTGTATTTTGCAGGCCCTCG
AACCCCGAGGCGTGGGAGAGGGTCCAGCTGCGGGAGCTCAAGAATGGTCG
CCTGGCGATGATCGCGATCGCGGGCATGATTGCTCAGGAGTCAATCTCCG
GCTTGGGTGTACTCCAGCGCGGAGACCCCTACGCTGGCTTCGTCTAAACA
GCGTCTAGTCAGTAAATATAACAAATTGCGCGAGAGATGAAACAGTATCT
CTGATTTTTTCAGTTGTAGAGGCAAAACGTACTAATGAAGTCTACCTTTT
GAGTTGGTCTTTGTGCAGTCGTTTTTCCTCATGAGGTGCCACGGGGCGGG
CACAAGGATGCGCGCATTCTTTCGTTCGTCAGGTGTCCTCACATGCCGTA
TTTTGAAGCATCAAGCCTTGTGTCGAGCCTCGAGCTTGGGGACCAACACG
CACATCTTTTTAGGCAAGGAGTTGAGTTTTCCAGTTTCGTGTCGTCGATA
CGGCAGTATAGTAGCCATGTCAAGTCCGATTCTTACGTTCCCCTGGACAG
AAGCTTGCAATATTTAGCAAATGCACTGGAGATGAGGGGATATGGGAGGT
GGACGGCGAATATTTCTAGTGTGACGTTTATTTTTGGGCAAATTTAGTCG
AGGGCGTAGAATCAGGAGCAGGGAGAGACGTCTACAAAGGCCTGTCGAAA
TTTATACCGTCAAATTCGTCCATGCGTGATGCAATCACACGAATTAGAGA
GTTGTATGCATGGTCACGGTTGTGTCCGTCTTGATGTAATGGCGGATTTG
TGTCGAATCAGGTGAAGAGAAGAAAAGAGCGAATTACACAGGCGGCTTTT
TCCGGTGTCCCATGAGGCATGGGAATTTTAATGTGTCGTCATACGCAACA
CGGGGGTGGTGATGCCAGCCGTGTGTCCTCTCTCATGTAGCGGTGGCGTA
CACGCACCTGTGCTAATATATTACATTATGCAACATGTATCAGAAGACCT
CATCAGCGAACAGTCTAGAACGCATGCATATGTTGCGCTCTGAAGCTACA
TAATGCAAAACCCGAAACGTGGCGGTAAATAAGTGTTGAGAAGGAAAAAT
CGTCACAACTGAAGAACATAACTTACGTAAATTGTAGACAGCGAAAACTC
AACGGTTGATATTGGGAACCGAGTCAGATACTATCTAATAGTACCAAAAT
ACATTAATGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2469:15483..20443+

>mRNA_H-paniculata_contig2469.6695.1 ID=mRNA_H-paniculata_contig2469.6695.1|Name=mRNA_H-paniculata_contig2469.6695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig2469:15483..20443+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCTGTGGCTGTTCTCGCTGTGGTGGTGGCGTCTGCTGCCGCGTT
CGTACCGAATGCTCCCATCAACGGAAGGGTGCCCGCGTCCCGCACCGCGA
GGTCCTCCAGATGAAGTCTGTGGCTGTTCTCGCTGTGGTGGTGGCGTCTG
CTGCCGCGTTCGTACCGAATGCTCCCATCAACGGAAGGGTGCCCGCGTCC
CGCACCGCGAGGTCCTCCAGTCTACAAATGGCGAAGAAGCCAGCTGCCCC
CGTGGCGTCGTCGGGCAGTGCGGTAGATGGCCTGGTTGGCTTCGACATTG
AGACAGGCGGCCAATTCGACCCCCTTGGCTTCGGCCGCAACTGCCCCCCG
GAGCAAATGCAGTGTCTACAAATGGCGAAGAAGCCAGCTGCCCCCGTGGC
GTCGTCGGGCAGTGCGGTAGATGGCCTGGTTGGCTTCGACATTGAGACAG
GCGGCCAATTCGACCCCCTTGGCTTCGGCCGCAACTGCCCCCCGGAGCAA
ATGCAGTGGTACCGCGCGGCGGAGCTCAAGCACGGACGCATCTGCATGCT
TGCCGCGTTTGGGCAATTCGTACAGTCGTACGGAATCCACTGGAATGACC
CTTCCGGAATCTTCGACCAGCCTCAGCCATGGGCTGCCATGCAGCAGGTA
CCGCGCGGCGGAGCTCAAGCACGGACGCATCTGCATGCTTGCCGCGTTTG
GGCAATTCGTACAGTCGTACGGAATCCACTGGAATGACCCTTCCGGAATC
TTCGACCAGCCTCAGCCATGGGCTGCCATGCAGCAGGTGTACGAGCAGCG
CCCGTTGGCCTTCGTGCAAATCTTCCTCGCTATATTCGCGGCTGAGGTGT
GGGGAAACAAGCAGCAGGAGCAGTCTCCGCTAGGCGGGGACCTTGGCTGG
GACCCCCTTGGGCTCAAGTGTACGAGCAGCGCCCGTTGGCCTTCGTGCAA
ATCTTCCTCGCTATATTCGCGGCTGAGGTGTGGGGAAACAAGCAGCAGGA
GCAGTCTCCGCTAGGCGGGGACCTTGGCTGGGACCCCCTTGGGCTCAAGC
CCTCGAACCCCGAGGCGTGGGAGAGGGTCCAGCTGCGGGAGCTCAAGAAT
GGTCGCCTGGCGATGATCGCGATCGCGGGCATGATTGCTCAGGAGTCAAT
CTCCGGCTTGGGTGTACTCCAGCGCGGAGACCCCTACGCTGGCTTCGTCT
AAGCCCTCGAACCCCGAGGCGTGGGAGAGGGTCCAGCTGCGGGAGCTCAA
GAATGGTCGCCTGGCGATGATCGCGATCGCGGGCATGATTGCTCAGGAGT
CAATCTCCGGCTTGGGTGTACTCCAGCGCGGAGACCCCTACGCTGGCTTC
GTCTAA
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