mRNA_H-paniculata_contig24685.6690.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24685.6690.1
Unique NamemRNA_H-paniculata_contig24685.6690.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: D8LCY7_ECTSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY7_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.310e-16
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   40 TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            TSGTTGNP+GALLTH N IAD+AA+ LM+T  A S++VYLSYLPLPH+ ERM QV
Sbjct:  211 TSGTTGNPKGALLTHRNFIADSAAAELMETFNADSTDVYLSYLPLPHIFERMVQV 265
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BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A1U7ZPB6_NELNU (Long-chain-fatty-acid--CoA ligase n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZPB6_NELNU)

HSP 1 Score: 68.2 bits (165), Expect = 9.870e-12
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 PYCPAFPRRYAPS--TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            P+CP  P   A    TSGTTG P+GA+LTHGNLIA+ A S    T+   SS+VY+SYLPL H+ ER  QV
Sbjct:  248 PFCPPNPEDIATICYTSGTTGTPKGAVLTHGNLIANIAGSC--HTIKFYSSDVYISYLPLAHIYERANQV 315
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BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A7N2R620_QUELO (Long-chain-fatty-acid--CoA ligase n=5 Tax=Fagaceae TaxID=3503 RepID=A0A7N2R620_QUELO)

HSP 1 Score: 67.8 bits (164), Expect = 1.350e-11
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 PYCPAFPRRYAPS--TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            P+CP  P   A    TSGTTG P+GA+LTHGNLIA+ A + L  ++  +SS+VY+SYLPL H+ ER+ Q+
Sbjct:  248 PFCPPKPDDVATICYTSGTTGTPKGAILTHGNLIANVAGTSL--SVKFLSSDVYISYLPLAHIYERVNQI 315
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BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A1U8G3X4_CAPAN (Long-chain-fatty-acid--CoA ligase n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8G3X4_CAPAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.840e-11
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PYCPAFPRRYAPS--TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            P+CP  P   A    TSGTTG P+GA+LTH NLIA+ A + +  TL   +S++Y+SYLPL H+LER  QV
Sbjct:  250 PFCPPNPEAVATICYTSGTTGTPKGAVLTHANLIANVAGTSIGVTLY--TSDIYISYLPLAHILERATQV 317
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BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A2G2ZVK5_CAPAN (Long-chain-fatty-acid--CoA ligase n=2 Tax=Capsicum TaxID=4071 RepID=A0A2G2ZVK5_CAPAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.850e-11
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PYCPAFPRRYAPS--TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            P+CP  P   A    TSGTTG P+GA+LTH NLIA+ A + +  TL   +S++Y+SYLPL H+LER  QV
Sbjct:  340 PFCPPNPEAVATICYTSGTTGTPKGAVLTHANLIANVAGTSIGVTLY--TSDIYISYLPLAHILERATQV 407
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BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A2G2W0D7_CAPBA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W0D7_CAPBA)

HSP 1 Score: 67.4 bits (163), Expect = 1.860e-11
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PYCPAFPRRYAPS--TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            P+CP  P   A    TSGTTG P+GA+LTH NLIA+ A + +  TL   +S++Y+SYLPL H+LER  QV
Sbjct:  687 PFCPPNPEAVATICYTSGTTGTPKGAVLTHANLIANVAGTSIGVTLY--TSDIYISYLPLAHILERATQV 754
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BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A6A1VMU3_9ROSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VMU3_9ROSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.420e-11
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 PYCPAFPRRYAPS--TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            P+CP  P   A    TSGTTG P+GA+LTHGNLIA+ A S +  T+    S+VY+SYLPL H+ ER  Q+
Sbjct:  248 PFCPPKPDDVATFCYTSGTTGTPKGAVLTHGNLIANVAGSSI--TMKFYPSDVYISYLPLAHIYERANQI 315
[Close]
BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A2P2MT92_RHIMU (Long-chain-fatty-acid--CoA ligase n=7 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MT92_RHIMU)

HSP 1 Score: 65.9 bits (159), Expect = 6.430e-11
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 PYCPAFPRRYAPS--TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            P+CP  P   A    TSGTTG P+GA+L+HGNLIA+ A S L        S+VY+SYLPL H+ ER+ QV
Sbjct:  251 PFCPPKPEDVATICYTSGTTGTPKGAVLSHGNLIANVAGSTLTHKFYP--SDVYISYLPLAHIYERVNQV 318
[Close]
BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A835ZFW5_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.430e-11
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   40 TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            TSGTTGNP+GAL+ H N+++DAA    M        EVY SYLPLPH+ ER  QV
Sbjct:  254 TSGTTGNPKGALIRHVNMVSDAAGCYAMGLAHCTPDEVYFSYLPLPHIFERQVQV 308
[Close]
BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Match: A0A2N9H2I0_FAGSY (Long-chain-fatty-acid--CoA ligase n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H2I0_FAGSY)

HSP 1 Score: 65.9 bits (159), Expect = 6.460e-11
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 PYCPAFPRRYAPS--TSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSEVYLSYLPLPHVLERMCQV 204
            P+CP  P   A    TSGTTG P+GA+LTHGNLIA+ A S +  T+    S+VY+SYLPL H+ ER  QV
Sbjct:  350 PFCPPKPDDVATICYTSGTTGTPKGAVLTHGNLIANVAGSSI--TVKFYPSDVYISYLPLAHIYERANQV 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24685.6690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY7_ECTSI1.310e-1672.73Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarp... [more]
A0A1U7ZPB6_NELNU9.870e-1255.71Long-chain-fatty-acid--CoA ligase n=2 Tax=Nelumbo ... [more]
A0A7N2R620_QUELO1.350e-1152.86Long-chain-fatty-acid--CoA ligase n=5 Tax=Fagaceae... [more]
A0A1U8G3X4_CAPAN1.840e-1152.86Long-chain-fatty-acid--CoA ligase n=2 Tax=Capsicum... [more]
A0A2G2ZVK5_CAPAN1.850e-1152.86Long-chain-fatty-acid--CoA ligase n=2 Tax=Capsicum... [more]
A0A2G2W0D7_CAPBA1.860e-1152.86Long-chain-fatty-acid--CoA ligase n=1 Tax=Capsicum... [more]
A0A6A1VMU3_9ROSI6.420e-1152.86Long-chain-fatty-acid--CoA ligase n=1 Tax=Morella ... [more]
A0A2P2MT92_RHIMU6.430e-1152.86Long-chain-fatty-acid--CoA ligase n=7 Tax=Rhizopho... [more]
A0A835ZFW5_9STRA6.430e-1156.36Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A2N9H2I0_FAGSY6.460e-1154.29Long-chain-fatty-acid--CoA ligase n=1 Tax=Fagus sy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24685contigH-paniculata_contig24685:2822..3031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1e-09
Seed eggNOG ortholog4432.XP_010255984.1
Preferred nameLACS7
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0001101,GO:0001676,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0006950,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010193,GO:0015645,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0032787,GO:0042221,GO:0042493,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0071704,GO:1901700
EggNOG free text desc.Long chain acyl-CoA synthetase
EggNOG OGs37QX3@33090,3GBB4@35493,COG1022@1,KOG1256@2759
EC6.2.1.3
COG Functional cat.I
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.4181275-CDS-H-paniculata_contig24685:2821..30311622929718.4181275-CDS-H-paniculata_contig24685:2821..3031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24685 2822..3031 +
1691480980.977588-CDS-H-paniculata_contig24685:2821..30311691480980.977588-CDS-H-paniculata_contig24685:2821..3031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24685 2822..3031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24685.6690.1prot_H-paniculata_contig24685.6690.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24685 2822..3031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24685.6690.1

>prot_H-paniculata_contig24685.6690.1 ID=prot_H-paniculata_contig24685.6690.1|Name=mRNA_H-paniculata_contig24685.6690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
PYCPAFPRRYAPSTSGTTGNPEGALLTHGNLIADAAASVLMDTLVAMSSE
VYLSYLPLPHVLERMCQVR*
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mRNA from alignment at H-paniculata_contig24685:2822..3031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24685.6690.1 ID=mRNA_H-paniculata_contig24685.6690.1|Name=mRNA_H-paniculata_contig24685.6690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig24685:2822..3031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATATTGTCCCGCGTTTCCACGCCGATATGCCCCTAGCACGTCGGGCAC
GACGGGAAATCCGGAGGGAGCGCTTTTGACGCACGGTAACCTTATAGCGG
ACGCCGCTGCATCAGTGTTGATGGACACCCTCGTCGCGATGTCGAGCGAG
GTGTACCTGTCCTACTTGCCCCTGCCCCATGTGCTCGAGCGCATGTGCCA
GGTGCGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24685:2822..3031+

>mRNA_H-paniculata_contig24685.6690.1 ID=mRNA_H-paniculata_contig24685.6690.1|Name=mRNA_H-paniculata_contig24685.6690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig24685:2822..3031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATATTGTCCCGCGTTTCCACGCCGATATGCCCCTAGCACGTCGGGCAC
GACGGGAAATCCGGAGGGAGCGCTTTTGACGCACGGTAACCTTATAGCGG
ACGCCGCTGCATCAGTGTTGATGGACACCCTCGTCGCGATGTCGAGCGAG
GTGTACCTGTCCTACTTGCCCCTGCCCCATGTGCTCGAGCGCATGTGCCA
GGTGCGTTGACCATATTGTCCCGCGTTTCCACGCCGATATGCCCCTAGCA
CGTCGGGCACGACGGGAAATCCGGAGGGAGCGCTTTTGACGCACGGTAAC
CTTATAGCGGACGCCGCTGCATCAGTGTTGATGGACACCCTCGTCGCGAT
GTCGAGCGAGGTGTACCTGTCCTACTTGCCCCTGCCCCATGTGCTCGAGC
GCATGTGCCAGGTGCGTTGA
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