mRNA_H-paniculata_contig2467.6689.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2467.6689.1
Unique NamemRNA_H-paniculata_contig2467.6689.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2467.6689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2467contigH-paniculata_contig2467:17848..18603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size758
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.2531137-CDS-H-paniculata_contig2467:17847..186031622929718.2531137-CDS-H-paniculata_contig2467:17847..18603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2467 17848..18603 +
1691480980.9653656-CDS-H-paniculata_contig2467:17847..186031691480980.9653656-CDS-H-paniculata_contig2467:17847..18603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2467 17848..18603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2467.6689.1prot_H-paniculata_contig2467.6689.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2467 17848..18603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2467.6689.1

>prot_H-paniculata_contig2467.6689.1 ID=prot_H-paniculata_contig2467.6689.1|Name=mRNA_H-paniculata_contig2467.6689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
VVAVLISRSRQVMEARREIRRLIVQQQSGAIGEQTGGDSAGGAVDGAVGG
GASHDKKRKAIKKKTSSTGGILSSGANHFASLGDAYNDEGNAINKNNDDD
DDDEGVASHPGDADTIRRWEDLLGEVGGQRRSAADGIDWRRRVLRGGGGG
GNVTGKGGGRDGGGGSGHREGDWTDQPTQNRLVPRGLELLPCLRVPLRPS
GDACELSAAGGRASGVAAVVPEESKREITEYVPWVSAVDGGYGNWVLAAS
SS
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mRNA from alignment at H-paniculata_contig2467:17848..18603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2467.6689.1 ID=mRNA_H-paniculata_contig2467.6689.1|Name=mRNA_H-paniculata_contig2467.6689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at H-paniculata_contig2467:17848..18603+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTGCCGTGTTGATTAGCCGGAGTCGCCAGGTGATGGAAGCGAGGCG
AGAGATTCGCCGCCTCATTGTCCAACAGCAATCCGGGGCAATCGGAGAAC
AAACCGGCGGAGACAGCGCCGGCGGCGCTGTCGACGGAGCAGTTGGAGGG
GGGGCGTCACACGACAAGAAGAGAAAGGCAATAAAGAAAAAGACCAGTAG
TACTGGTGGTATCTTATCTTCTGGCGCTAACCATTTTGCTTCTCTTGGGG
ATGCCTACAATGACGAAGGCAACGCTATCAACAAGAACAATGATGATGAT
GATGATGATGAGGGCGTGGCCTCACATCCTGGAGACGCGGACACAATACG
ACGCTGGGAGGACTTACTGGGTGAGGTTGGAGGCCAGAGAAGAAGCGCTG
CCGATGGAATCGACTGGCGGCGGAGGGTACTACGCGGCGGCGGCGGAGGC
GGGAATGTGACGGGGAAAGGGGGTGGTAGGGACGGCGGCGGCGGCAGCGG
GCACCGAGAGGGTGATTGGACGGACCAGCCGACACAGAATCGTCTTGTGC
CTAGGGGGCTCGAACTACTGCCTTGCTTGCGGGTCCCCCTTCGCCCATCG
GGTGATGCTTGCGAGTTGTCAGCAGCCGGCGGCAGAGCTTCGGGAGTAGC
GGCCGTAGTGCCGGAAGAATCAAAGCGGGAGATCACCGAGTATGTGCCGT
GGGTCAGTGCGGTGGATGGCGGGTACGGGAACTGGGTGTTGGCTGCGTCG
TCCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2467:17848..18603+

>mRNA_H-paniculata_contig2467.6689.1 ID=mRNA_H-paniculata_contig2467.6689.1|Name=mRNA_H-paniculata_contig2467.6689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig2467:17848..18603+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTGCCGTGTTGATTAGCCGGAGTCGCCAGGTGATGGAAGCGAGGCG
AGAGATTCGCCGCCTCATTGTCCAACAGCAATCCGGGGCAATCGGAGAAC
AAACCGGCGGAGACAGCGCCGGCGGCGCTGTCGACGGAGCAGTTGGAGGG
GGGGCGTCACACGACAAGAAGAGAAAGGCAATAAAGAAAAAGACCAGTAG
TACTGGTGGTATCTTATCTTCTGGCGCTAACCATTTTGCTTCTCTTGGGG
ATGCCTACAATGACGAAGGCAACGCTATCAACAAGAACAATGATGATGAT
GATGATGATGAGGGCGTGGCCTCACATCCTGGAGACGCGGACACAATACG
ACGCTGGGAGGACTTACTGGGTGAGGTTGGAGGCCAGAGAAGAAGCGCTG
CCGATGGAATCGACTGGCGGCGGAGGGTACTACGCGGCGGCGGCGGAGGC
GGGAATGTGACGGGGAAAGGGGGTGGTAGGGACGGCGGCGGCGGCAGCGG
GCACCGAGAGGGTGATTGGACGGACCAGCCGACACAGAATCGTCTTGTGC
CTAGGGGGCTCGAACTACTGCCTTGCTTGCGGGTCCCCCTTCGCCCATCG
GGTGATGCTTGCGAGTTGTCAGCAGCCGGCGGCAGAGCTTCGGGAGTAGC
GGCCGTAGTGCCGGAAGAATCAAAGCGGGAGATCACCGAGTATGTGCCGT
GGGTCAGTGCGGTGGATGGCGGGTACGGGAACTGGGTGTTGGCTGCGTCG
TCCTCAGTGGTTGCCGTGTTGATTAGCCGGAGTCGCCAGGTGATGGAAGC
GAGGCGAGAGATTCGCCGCCTCATTGTCCAACAGCAATCCGGGGCAATCG
GAGAACAAACCGGCGGAGACAGCGCCGGCGGCGCTGTCGACGGAGCAGTT
GGAGGGGGGGCGTCACACGACAAGAAGAGAAAGGCAATAAAGAAAAAGAC
CAGTAGTACTGGTGGTATCTTATCTTCTGGCGCTAACCATTTTGCTTCTC
TTGGGGATGCCTACAATGACGAAGGCAACGCTATCAACAAGAACAATGAT
GATGATGATGATGATGAGGGCGTGGCCTCACATCCTGGAGACGCGGACAC
AATACGACGCTGGGAGGACTTACTGGGTGAGGTTGGAGGCCAGAGAAGAA
GCGCTGCCGATGGAATCGACTGGCGGCGGAGGGTACTACGCGGCGGCGGC
GGAGGCGGGAATGTGACGGGGAAAGGGGGTGGTAGGGACGGCGGCGGCGG
CAGCGGGCACCGAGAGGGTGATTGGACGGACCAGCCGACACAGAATCGTC
TTGTGCCTAGGGGGCTCGAACTACTGCCTTGCTTGCGGGTCCCCCTTCGC
CCATCGGGTGATGCTTGCGAGTTGTCAGCAGCCGGCGGCAGAGCTTCGGG
AGTAGCGGCCGTAGTGCCGGAAGAATCAAAGCGGGAGATCACCGAGTATG
TGCCGTGGGTCAGTGCGGTGGATGGCGGGTACGGGAACTGGGTGTTGGCT
GCGTCGTCCTCA
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