mRNA_H-paniculata_contig2464.6682.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2464.6682.1
Unique NamemRNA_H-paniculata_contig2464.6682.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: D7FT40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT40_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 6.690e-98
Identity = 160/208 (76.92%), Postives = 183/208 (87.98%), Query Frame = 2
Query: 1307 RARTASGYHAGLQSGKDFKVVEQELKRKHDAEMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAYIAKKQKKQQIKSGVPAKPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAKAVDGQYKADLAYKWATADM 1930
            R +T+SGY+AGLQSGKDFKVVEQ LKRKHDAEM  AD  +SG+GA TVYRDKKGRKLDMLNEFM+ QDARAGK+V  A+ Q+AWGRGKVQK++EK+W+EE++NIAAEPFART+DD+RLE  RKAEIR DDPMAAY+AKK+ K+ +KSG P KPEYKGP PKPNRF IRPGYRWDG DRGNGWE +IVAK VD  YKA+LAYKWATADM
Sbjct:  422 RVKTSSGYYAGLQSGKDFKVVEQNLKRKHDAEMKGADKSSSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKDQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKAKEGVKSGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWESRIVAKGVDNNYKAELAYKWATADM 629          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: A0A6H5KM91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM91_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 1.350e-68
Identity = 125/171 (73.10%), Postives = 148/171 (86.55%), Query Frame = 2
Query: 1307 RARTASGYHAGLQSGKDFKVVEQELKRKHDAEMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAYIAKKQKKQQIKSGVPAKPEYKGPPPKPNRFNIRPGY 1819
            R +T+SGY+AGLQSGKDFKVVEQ LKRKHDAEM  AD  +SG+GA TVYRDKKGRKLDMLNEFM+ QDARAGK+V  A+ Q+AWGRGKVQK++EK+W+EE++NIAAEPFART+DD+RLE  RKAEIR DDPMAAY+AKK+ K+++KSG P KPEYKGP PKPNR    P +
Sbjct:  436 RVKTSSGYYAGLQSGKDFKVVEQNLKRKHDAEMKGADKRSSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKDQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKAKERVKSGKPLKPEYKGPQPKPNRHVWHPAW 606          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: A0A835ZAF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF7_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.300e-54
Identity = 98/167 (58.68%), Postives = 125/167 (74.85%), Query Frame = 2
Query: 1430 GRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAYIAKKQKKQQIKSGVPAKPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAKAVDGQYKADLAYKWATADM 1930
            G+ A TVYRD++GRKLDML+EFMRQQDAR G     A+A+Y WGRGKVQK+ ++  ++E++NI   PFART +   L+ E KA++R DDPMAAY+AKKQ K    SG P KP YKGPPPKPNRF I PGYRWDGVDRG+GWE K+V   +  ++K + +Y++  ADM
Sbjct:    1 GQTAETVYRDRRGRKLDMLSEFMRQQDAREGAVREKADAEYEWGRGKVQKEDKERQRDELENIKLAPFARTAE--HLDEELKAQLRSDDPMAAYMAKKQAKTAAASGKPLKPVYKGPPPKPNRFGILPGYRWDGVDRGSGWEQKLVDAQLARRHKGEASYQYGCADM 165          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: A0A7S2BP57_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP57_9STRA)

HSP 1 Score: 194 bits (494), Expect = 5.000e-54
Identity = 100/179 (55.87%), Postives = 124/179 (69.27%), Query Frame = 2
Query: 1400 EMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAYIAKKQKKQQIK--SGVPAKPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAKAVDGQYKADLAYKWATADM 1930
            +   AD     +   T+YRDKKGRKLDMLNEFMRQQ  R GKEV     Q  WG+G VQK +EK  QEE+ NIA EPFART++D +++A  + +I  DDPMAAY+ KK++K+ +K  +G PAKP YKGP PKPNRF I PGYRWDGVDRG GWEDK+ A   +        Y+W+T+DM
Sbjct:   10 QQKEADKSLGDKQEETIYRDKKGRKLDMLNEFMRQQAIREGKEVEEKAEQEEWGKGTVQKQEEKAHQEELANIANEPFARTVNDPKVDAMYREKIHADDPMAAYMMKKREKEGVKGKNGKPAKPFYKGPKPKPNRFGIPPGYRWDGVDRGTGWEDKVYAYQANKGVNKQAEYEWSTSDM 188          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: A0A7R9U1Z5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1Z5_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.060e-51
Identity = 100/185 (54.05%), Postives = 128/185 (69.19%), Query Frame = 2
Query: 1319 ASGYHAGLQSGKDFKVVEQELKRKHDAEMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAYIAKKQKKQQIKSGVPAKPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAK 1873
            +SG+ AGL +   FK  E EL+R   A+++R   E SG+ + TVYRD++GRKLDML+EFMRQQ+ +  K        Y WG+G  QK  EKE++EE++NI  EPFAR  DD RLE  RK E+RPDDPM AY+    +KQ+ K+G   K  Y GPPP PNRF I PGYRWDGVDRGNG+E +++AK
Sbjct:   27 SSGHRAGLHTADSFKRAEDELRRDKAAKLSRMSDELSGKNSETVYRDRQGRKLDMLSEFMRQQEEKESKRXXXXXX-YEWGKGTKQKKMEKEYEEELENIRNEPFARAHDDPRLERMRKEELRPDDPMLAYV----QKQRAKTGKSTKKAYTGPPPPPNRFGIPPGYRWDGVDRGNGFEARVLAK 206          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: A0A7S1GEN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEN6_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.500e-48
Identity = 99/199 (49.75%), Postives = 128/199 (64.32%), Query Frame = 2
Query: 1313 RTASGYHAGLQSGKDFKVVEQELKRKHDAEMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAYIAKKQKKQQIKSGVPA-KPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAKAVDGQYKADLA 1906
            R A+G  AGL  G+D K  +  L+R+   ++   DAE  G+GA TVYRD+KGRKLDML E MRQQD   GK+VA     + WG G VQK + +   EE+  IA  PFART DD  +    K++IR  DPMAA + +KQ+++  K G P  KP+Y+GP P PNR+ I PGYRWDGVDRGNGWE K++A       +A+ A
Sbjct:    1 RMATGERAGLLKGEDMKAEQLALRRREREKLAAMDAEMMGQGAETVYRDRKGRKLDMLQEMMRQQDLAKGKKVAKEAEAFDWGTGAVQKREVEARAEEMAKIAEAPFARTADDKDMNDYLKSQIREGDPMAAAMMRKQRERAAKEGGPGGKPQYRGPAPPPNRYGIAPGYRWDGVDRGNGWERKLLAYKAGKAARAEKA 199          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: A0A7S4D5S3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5S3_HETAK)

HSP 1 Score: 177 bits (449), Expect = 2.820e-46
Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 2
Query: 1307 RARTASGYHAGLQSGKDFKVVEQELKRKHDAEMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAY-IAKKQKKQQIKSGVPAKPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAKAVDGQYKADLAYKWATADM 1930
            R + +SG+ +GLQSG +FK +EQ+++    AE+  AD E SGR A TVYRDK+GRKLDML +FM QQ+A+ GK+    + Q+ WGRG VQK +E+++QEE++ I A+PFAR  DD +L    K EI  DDPMAAY +                          NR+ +RPGYRWDG DRGNG+E +++ KA D Q   +  Y W+ +DM
Sbjct:   93 RQKMSSGHASGLQSGAEFKEIEQQVRAARAAELAGADEEVSGRNAGTVYRDKRGRKLDMLTQFMEQQEAKDGKKKREEQEQFEWGRGAVQKRRERDFQEELREIQAQPFARYRDDEKLNQAAKEEIHADDPMAAYMLXXXXXXXXXXXXXXXXXXXXXXXXXXNRYGLRPGYRWDGHDRGNGFEARVLGKAADRQVFNERKYNWSVSDM 301          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: A0A482RZN6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZN6_9ARCH)

HSP 1 Score: 172 bits (436), Expect = 1.510e-45
Identity = 97/216 (44.91%), Postives = 138/216 (63.89%), Query Frame = 2
Query: 1316 TASGYHAGLQSGKDFKVVEQELKRKHDAEMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAYIAKKQKKQQIK-----------SGVPAKPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAKAVDGQYKADLAYKWATADM 1930
            ++SG  AGLQ+GK+F   E  ++R+ DAE+++       R AT VYRDK+GRK+D L+E +R+Q+  A ++    +AQ  WG G VQK + ++   +   IAAEPFART +D RLEA+R+  +R  DPMA Y+  K  K+Q +           S VP+KP YKGP P PNRF +RPGYRWD VDR NG+E+K++ +  +     + AYKW+ AD+
Sbjct:    2 SSSGRKAGLQTGKEFGTNELLMRRQLDAELSQLAGSGPNREAT-VYRDKQGRKVDKLSEQLREQEGEAQRKSQIEQAQRDWGAGSVQKKEAQQRAADFAAIAAEPFARTSEDPRLEAQRRLTLRDGDPMAEYLRDKMAKKQRRDPEDTRRPGSASAVPSKPLYKGPNPTPNRFGLRPGYRWDAVDRSNGFEEKVLKRLNEKMSFNEEAYKWSVADL 216          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: A0A6V1PRD0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PRD0_HETAK)

HSP 1 Score: 177 bits (449), Expect = 5.730e-45
Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 2
Query: 1307 RARTASGYHAGLQSGKDFKVVEQELKRKHDAEMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAY-IAKKQKKQQIKSGVPAKPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAKAVDGQYKADLAYKWATADM 1930
            R + +SG+ +GLQSG +FK +EQ+++    AE+  AD E SGR A TVYRDK+GRKLDML +FM QQ+A+ GK+    + Q+ WGRG VQK +E+++QEE++ I A+PFAR  DD +L    K EI  DDPMAAY +                          NR+ +RPGYRWDG DRGNG+E +++ KA D Q   +  Y W+ +DM
Sbjct:  214 RQKMSSGHASGLQSGAEFKEIEQQVRAARAAELAGADEEVSGRNAGTVYRDKRGRKLDMLTQFMEQQEAKDGKKKREEQEQFEWGRGAVQKRRERDFQEELREIQAQPFARYRDDEKLNQAAKEEIHADDPMAAYMLXXXXXXXXXXXXXXXXXXXXXXXXXXNRYGLRPGYRWDGHDRGNGFEARVLGKAADRQVFNERKYNWSVSDM 422          
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Match: W7TD64_9STRA (Bud13 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD64_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.140e-45
Identity = 97/207 (46.86%), Postives = 138/207 (66.67%), Query Frame = 2
Query: 1337 GLQSGKDFKVVEQELKRKHDAEMNR-----ADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVATAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEIRPDDPMAAYIAKKQK----KQQIKSGVPAKPEYKGPPPKPNRFNIRPGYRWDGVDRGNGWEDKIVAKAVDGQYKADLAYKWATADM 1930
            GL++G +F+    EL+ + DAE +       DA  +G+ A TV RD++GRKL+ML+EF+ Q+  + GK    A+ +Y WGRGKVQK+K+++ + E+++I   PFAR   D +LE  RK EIR DDPMAAY+ +KQ+    ++  +SG   KPEYKGPPPKPNRFNIRPGYRWDG+DRGNG+E +   +  +   K +    W  +D+
Sbjct:  168 GLKTGAEFRA---ELEAQKDAEAHAWAEGAKDAGVTGQHAETVVRDRRGRKLEMLSEFLNQEAYKEGKAAKEAKEEYEWGRGKVQKEKDEDHRRELEDIKNAPFARYESDLKLERARKEEIRADDPMAAYMLQKQRDALAQEATRSGKVLKPEYKGPPPKPNRFNIRPGYRWDGIDRGNGFEARWFKRQSELVTKHERDRAWGMSDL 371          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2464.6682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT40_ECTSI6.690e-9876.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM91_9PHAE1.350e-6873.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAF7_9STRA3.300e-5458.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BP57_9STRA5.000e-5455.87Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9U1Z5_9STRA1.060e-5154.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1GEN6_9STRA1.500e-4849.75Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4D5S3_HETAK2.820e-4645.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482RZN6_9ARCH1.510e-4544.91Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6V1PRD0_HETAK5.730e-4545.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TD64_9STRA6.140e-4546.86Bud13 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2464contigH-paniculata_contig2464:4371..16048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.3
Seed ortholog evalue1e-87
Seed eggNOG ortholog2880.D7FT40
KEGG koko:K13100,ko:K13106
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2654@1,KOG2654@2759
Ec32 ortholog descriptionBud13
Ec32 orthologEc-04_002730.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons9
Model size2415
Cds size1899
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.8694363-UTR-H-paniculata_contig2464:4370..44041622929716.8694363-UTR-H-paniculata_contig2464:4370..4404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2464 4371..4404 +
1691480980.4259207-UTR-H-paniculata_contig2464:4370..44041691480980.4259207-UTR-H-paniculata_contig2464:4370..4404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2464 4371..4404 +
1622929717.0406666-UTR-H-paniculata_contig2464:15566..160481622929717.0406666-UTR-H-paniculata_contig2464:15566..16048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2464 15567..16048 +
1691480980.512092-UTR-H-paniculata_contig2464:15566..160481691480980.512092-UTR-H-paniculata_contig2464:15566..16048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2464 15567..16048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.8854568-CDS-H-paniculata_contig2464:4404..44411622929716.8854568-CDS-H-paniculata_contig2464:4404..4441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 4405..4441 +
1691480980.4364421-CDS-H-paniculata_contig2464:4404..44411691480980.4364421-CDS-H-paniculata_contig2464:4404..4441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 4405..4441 +
1622929716.9007173-CDS-H-paniculata_contig2464:7535..77271622929716.9007173-CDS-H-paniculata_contig2464:7535..7727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 7536..7727 +
1691480980.4460757-CDS-H-paniculata_contig2464:7535..77271691480980.4460757-CDS-H-paniculata_contig2464:7535..7727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 7536..7727 +
1622929716.915954-CDS-H-paniculata_contig2464:9546..99731622929716.915954-CDS-H-paniculata_contig2464:9546..9973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 9547..9973 +
1691480980.4569602-CDS-H-paniculata_contig2464:9546..99731691480980.4569602-CDS-H-paniculata_contig2464:9546..9973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 9547..9973 +
1622929716.93192-CDS-H-paniculata_contig2464:10057..106341622929716.93192-CDS-H-paniculata_contig2464:10057..10634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 10058..10634 +
1691480980.4652393-CDS-H-paniculata_contig2464:10057..106341691480980.4652393-CDS-H-paniculata_contig2464:10057..10634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 10058..10634 +
1622929716.9481025-CDS-H-paniculata_contig2464:10706..108321622929716.9481025-CDS-H-paniculata_contig2464:10706..10832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 10707..10832 +
1691480980.4727688-CDS-H-paniculata_contig2464:10706..108321691480980.4727688-CDS-H-paniculata_contig2464:10706..10832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 10707..10832 +
1622929716.9670825-CDS-H-paniculata_contig2464:12572..127071622929716.9670825-CDS-H-paniculata_contig2464:12572..12707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 12573..12707 +
1691480980.4801173-CDS-H-paniculata_contig2464:12572..127071691480980.4801173-CDS-H-paniculata_contig2464:12572..12707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 12573..12707 +
1622929716.9835775-CDS-H-paniculata_contig2464:13329..135211622929716.9835775-CDS-H-paniculata_contig2464:13329..13521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 13330..13521 +
1691480980.4873939-CDS-H-paniculata_contig2464:13329..135211691480980.4873939-CDS-H-paniculata_contig2464:13329..13521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 13330..13521 +
1622929717.0080519-CDS-H-paniculata_contig2464:14624..147011622929717.0080519-CDS-H-paniculata_contig2464:14624..14701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 14625..14701 +
1691480980.4951146-CDS-H-paniculata_contig2464:14624..147011691480980.4951146-CDS-H-paniculata_contig2464:14624..14701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 14625..14701 +
1622929717.025239-CDS-H-paniculata_contig2464:15430..155661622929717.025239-CDS-H-paniculata_contig2464:15430..15566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 15431..15566 +
1691480980.5031493-CDS-H-paniculata_contig2464:15430..155661691480980.5031493-CDS-H-paniculata_contig2464:15430..15566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2464 15431..15566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2464.6682.1prot_H-paniculata_contig2464.6682.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2464 4405..15566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2464.6682.1

>prot_H-paniculata_contig2464.6682.1 ID=prot_H-paniculata_contig2464.6682.1|Name=mRNA_H-paniculata_contig2464.6682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=633bp
MNSKLDYLKKYGDVGGGGGDGGDGDGTKKKRRKKGAKGAAGQDVRTGGLR
IVDDEADMVMLDRRKVNKAWEDPEAEEEKPVVVLDDPEDRKIAETGSWTT
VGVGGGGGNSNHGCSSNTIEEDTSPVRRRKRHDSFEEDTSPPRRPPRNTS
GGGGGGDGKGRGGGTQKDASPPRRRNRHDSSSSGSNSSREDDASPPRRKQ
HGGGGRMGAASSDSACAPDRDNNGSNARLIASEENASPPRKTSSRSSRHG
GGGISDTGRSGRRSRDDSRGHAGRDDSELQRSNNGNDASPPRRKRPRDND
YDDASPPRRRGEQRGSGSGGRNRSDADGNDASPPRRRGHGGGASSNDSGS
NNGGDRRRRSRSPAATADRGGASDSDPSPPRRRNRHSLGRGETEGGREGR
RRRHDSPEEREGADGGGGGGGGGERARTASGYHAGLQSGKDFKVVEQELK
RKHDAEMNRADAEASGRGATTVYRDKKGRKLDMLNEFMRQQDARAGKEVA
TAEAQYAWGRGKVQKDKEKEWQEEIQNIAAEPFARTIDDSRLEAERKAEI
RPDDPMAAYIAKKQKKQQIKSGVPAKPEYKGPPPKPNRFNIRPGYRWDGV
DRGNGWEDKIVAKAVDGQYKADLAYKWATADM*
back to top

mRNA from alignment at H-paniculata_contig2464:4371..16048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2464.6682.1 ID=mRNA_H-paniculata_contig2464.6682.1|Name=mRNA_H-paniculata_contig2464.6682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11678bp|location=Sequence derived from alignment at H-paniculata_contig2464:4371..16048+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAGATCAGGGTTTTTGGCAACACATCGTAAACATGAACTCAAAGCTGG ACTACCTAAAGAAGTATGGAGGTAAGATTGTGGGCAGTGAGTGGATTTCG GAATGCGAATCGTGGCTAGCGTAAGGAATGGAAAAATGTACTAAGCAATG CAAATTGACCACGCCTCATTGTTTATGCCCTCCAACAAGACCAACTGTCC GAGTACAGGAGCATAGGGAACACGTGCCTAGGCTATCATTTATGAACATA TTGGATAGGGTGATGGGGTTGGCCCTGCTTGAGTTGAGCCACCACAATAC GCGGACGACTCAAGCAATGGCAATGCCAACCACAATTTAGATTTTCTGGT ATCGGCCAGACCGCAAATAGTGTGAGGTTACTTGCAAAGAACAACACAAC ATCAATAGTACTACAGACAAGTACTAAATTGTAGGGATTCAAATGAACCA TCAGCTACCCCGTCAAGCGCTCTTCATCACTGTCTGTACTGACTGTAGTC TGTGTCCAGTTGTCAGGCGCACATATGTTTGGTGTTAGCGAGAGGTGAAC TTGATCAGTGCACGTTTATTGGCCGGCTCTACATGCTCCATGACCTTCTA TCCTGTCTGTCTATATATGGTTTTTGGCATACTGTACTATCTTCAAGTAA TCACGCACACTTCAGAGACAGGGTCTCGTTATTGTGCTCTCCATCGTAGC TCATTCTTTTTTAATCCTTGCCTCGTTATTGTATAACTATTCATATATTC CTTGGAAAAGCTCTTGCCACCATGTCTTAGTTTTAGCTGCGGAATTACCG ATCTCTTGGTACGGTTGCGTATCTGGCTTAACCGGAGAATCCTCCCCATG TTTTGGTCAACTTGGTGGAGAATGACGATATATACTGAAATATTAATATT GTTGTGCGGCCGACTGCCTACTTTGTTGAGTTCTGTGTGAGCAGCCTCTG TGTAAAGCGGAGTAGAGTGAAGACAAGTCAGCGAAGACGGTACGGCAGTT ACAGCCAGTACACTGAAGTACAGACAGGACAGCACAGACGGTATAGTAGG TTGACGATCATGCGGTTTGCAACTGAAGCGATACGGGGTGGTCGATGCCA CAAAATCGATCCAAACGACCAAAATGACCCCCCTTTTTTTTTTAAGTCAT AGCCCAAAAATTAGGGATTACTTGATTCAAGTATCAAACGTTTTATCGAG TAAATCCTAGCTCTAAGATCGAACTGGCTAATTCCAATATACTAAGTACA TGCCTACAGCTGTCTGTGATCTAATGCATGTGCAGTGGCGATTTTGGATT CGTCTTATAATGGTAACGCACGTCACGAAAAAATATGTATTTTAAAGATA TTTCAGTTCGTAGCTCCCTTATTTTTTTGTTTAGCCGAAATCGCCATTGC GCATCCACTGGTACTCGTCCCAGTGAATACAGCACATCAAGCTGCGCACG ATTCCTCGCAGTTGTCGATGAGAACTGCCTCATCAAAGATTGCATGGCTT GCCATGCGGCCAAGTTTTTAGATACTAATTTCAAGTATAAAACAATGTCG AACATAACTCGGCATGACCTGGCGGCTACACGTTTCTGCACAACTAATTT CAAGTATAAAGACATAGCTGAAGTGAGCAAAATCTCATCAAGATTCAAAG AGATTACTAAGGTTTAAAAAAAAGGGAGTAACGCTGCACAATTTTTTTCA GGCAGGTATAGTCGCTGGCGGGATAGAAGCCACCTCCTGGGCGGTGTAGA GTAGTGTAACAGCCAGTACAGTCAATTGACCAGATCACTCGACAAGACCT GCCGCACTCCCTTCTGTGCGTTTTCGCATCTCAGATAGTGCACGGCTGTT AGCCATGCCTCTTGTGCGTCGTCCGGACCAGGTAAGCAGAGCAGCAGCTG CAGTGTTGTGTGGGCCGGCGTGCCTCATTGATCGGTTTTTGCGGGTTTTT GCGTGTGCATTTCTGATTGGCTCATTTGAAAAATTCTGTTCGATATGAAA AAGAAAAAGAAAATCCCGAGCACACGTTTCCAACCATGGACGACACCTAT CGCTCCTCTTAACTGTACTGTACTTATTGTACTGTAGTATTGCTCTAGTA CAAACAGTATAAAGAACAGCGTCCTACACGGCACCCACAAGTACACTAAA TCCAGTATGATTCAAGTAATACACGCAGCATCAGATTTCGGTAGCTGTAG TTGGTCTCAATTCCTCAGAGTTCGGGGCTCAGTCCCACAATATAAAACGT TCGTGGTGCTCACGCGTGGTGTCGAGCCTTCCCAGCTTGACGGTCACCCT GAGCCCACTGTTTTCTCTTAGATACTACAACCCATACATTTGTTTAAAAG TTTCCAATTAAAACACCCGTTTTTTACAACACAATGGTCTAGATGTGCAC TGCACCGCTGACACAACTATCGCAGGGGATTGCCCTGTATGGCATGTGCT ACGGTACGCCCTCTATATCTAACCCAAGCCGACATAAGAGGATTGGCCCT ATACCCCCATAACCGTTGCAAGATTCGCCACGTGCCAGTCCAGTATTGTC GTTTTTTTGTCCCGGGCAAAAAACAGTACCTGATAGAAAACACAAGTAGG ATCCAGGCAGATAAAGAGGCTGCGGGATAGGGAGATACAAGCTGGCTGTT CTGACGTGTTCCCTGCAATGCTTCTATAAGGCGGGATACCAACCACCAAG CGTGTGAAGAGGGCATACGCGCTCAGACATCATGTACACATCGTTGTCTT TTGCATCTGTTGGACTACGCTACGCTTCAAAAGCGTGCTCTAGGGAGGTG AAGGAGCATGAACCTCAATTTTCTGTTAGAGGGACATTCAATTGGAAGTA AACTACGATTTGCAAATGTGGAGAGCACGTTCCTCACGTTCCTAACCCCC CCCCCGCGCGCGCGCGCCCCGGTTATAAGTACTGCATGTGCCTCGTACTT CAATTCCATGAACGAAAAAGCTCTGGACTTCATCTATATCAGAGCCCCAG CATAGCACCCGCGGCAGCCAGGTTGCTGTGGGGAGCATGGTGTTATCTCG AGTGCTTTTTTGCACACCAGGAGAGCGCTTGGAATCTCAGAACCTCTCGA CTTGACTCGTATTAAAAAGGAAATTAACACAACAGCGCTACCTTTGATAT TACTTACCTGTGTAGACGTCGGTGGTGGTGGTGGCGATGGTGGTGACGGT GACGGTACTAAAAAAAAGAGACGCAAGAAGGGAGCCAAGGGCGCCGCCGG GCAGGATGTGAGGACAGGGGGGCTCCGTATCGTCGACGACGAGGCTGACA TGGTGATGCTCGATAGGAGGAAGGTGAACAAGGCGTGGGAGGATCCCGAA GCCGAAGGTATGATGGTATGGTGGTAGCCGTAGTTTCTGCCAACAAACTT GACGTCCTCTTTCCCAACAGGGTGCTCTCCCCTGTATACTCCTGGAGTAT CTGTTTAGCTTCTACTGCAGTATCAAATACATGGATATCCTGATTACGAG GCTGGCATGCAAAAGCGGGGATACACATGGATATTAGCATAGATTTGACG GTTTTACCCTCGAGTCTCCAGACGATAATATGTACATGTTGAGTATATAT ATATATATATAGATAGATAAATAGATAAAACGCGCGTGATTTATTGAAGG TTTGAATTTGTGATTTTTAGGGCTTAAAGGAGTACTGCGAAGTTATAAGC TTGCGATGCTTCATGAGGTAGATGCTACCTTTTCCTTGACATTTTTTTTG CGATATTTTTTTGTATTTATATATAGCTCTAGAGCTATATATATATATAT ATACATATATATACTCAGACGTGACACTTACTTTTTAGTAGGTTTCAAAA GATGTGCGACCAATTGTATGTGCCATCCCGTGTTCGTAGCTGTGGGCAAT CGTAGGTGCGGGAAAAACTGGTGCTCTGTGTATGCCGTGTGCGTTCGATG CCGCCGTGTCGTTACGGAGGTTTAGGGATATAGGGTTGGTCATAAGGGGG TGAAAGTAGGGGTAGGTGTTGCAGTGGTCCATAGGGTCATCATTATCGAC AGACTGTTTAGTTTTTAAAACAATTCATGACTATTGAACCTTGTATAAGT ATCGAGACTGACGGTACTTCATGTTCCTCCCCAGCCAGTAGACTTTGTCC CCGTGTTTTTTTCGTCTCTCATCAGAGGATAACTGACAGTAAATAGATTA TCGTAACTGCATTTTAGGTGTCATTTTCTAAATGGCACACGGATGATTGA GTGCTTTCACTTGAATAATCTAGAGTGTATTGACTCGTTCTCCTGGTACC GTAAATATGCACCCCCCGGACAAATACGAATACTTGGCGTATTCGCCACG CGAACTGAAGCAGTGTTCGCCTGCATTTCGCAATCCACGACTACTAATAA TACCCGAGAATCGAATGGACGAGGGCGGGTACCTTATTCTATGTGTCCGC TCATTCTGAAACTCAGGCGAATACTTTATAATTTCCGTGGCGAATACGCC GAGTATTCTTATTTGGCCGGCGGGTGAAAATAGTCCAAAATGAGGTGTCC TGTGTGATCATTTACCATGTTGAAGTAAAAGATACTGTCGGGAGCTGATG CTTCTTGTCTATTCTCCAGAGCTCTGCGATGTCAATATCCATGCCACCTC CAGCAGATGCATCAAAATTCGACTTGTAGATATTTCTGTAGCCCGCATCA ATTTTCGACTTGACGTATTTTGCCCGGGAAACACTTGTGCCATATGTCGG ATAATCTGGCATGCGAAAGCCTTCGTGGTAAAAGGATCAGCGAGGATCTT TGCCGTAATCTCCTAGGGAGCTTGAATACACCATATATATATACCCGATA ACACGTTACTGTAGGACATGGCTCCTGCGATGACAAGACCGACGATACCC CGGCATCTTGGTGAAACTTGGAAATAGTCGCACACGAGATACAAAAACAG CGGCCTTCTTTATTCCAGTTTTTTCTGCCCCCCCCCCCTGCGCCCTCGGG TGATTTAAATCATGGCAAATCACTTCTACGCGCGCAGTCTCTCTTAACCT ATACTAAGTAGTACAGTAGTCGTACCAAAAATGTCTCCTTTTCGCTAAGC TGACTGACCCCGTTGTTTCATGTATATACACACACATAATGTTTGTCACT TGGCCACCTCCACCTTTTTTGCTCAGAGGAGAAACCAGTCGTGGTTCTAG ACGACCCAGAAGACCGCAAGATCGCCGAAACAGGATCATGGACCACTGTT GGCGTCGGTGGCGGCGGCGGAAATTCTAACCATGGCTGTAGTAGTAACAC CATCGAAGAAGATACATCGCCCGTGAGGCGAAGAAAGCGTCACGACAGCT TCGAAGAAGATACTTCGCCGCCCCGTCGACCTCCCAGAAATACCTCCGGT GGCGGTGGCGGCGGCGACGGCAAAGGTAGGGGTGGCGGTACTCAGAAAGA TGCATCGCCACCAAGGAGGAGGAACCGGCACGATAGTAGCAGCAGCGGCA GCAACAGTTCCAGGGAAGACGACGCCTCGCCCCCTCGTAGAAAACAACAC GGTGGTGGTGGGAGGATGGGCGCTGCGTCAAGCGATAGTGCCTGTGCGCC TGAGTATAATAGTGATGCTTCCCCACCTCGACGGGGAGAGGGCAGCAGCA CGGGAGGAACAGAAAGAGGAGGAGGAGGAAGGCGAAGTCGGGACAACAAC GGCAGCAACGCAAGGCTTATTGCAAGTGAAGAAAACGCCTCACCGCCAAG GAAAACCTCGAGTAGGAGCAGTCGCCATGGCGGCGGCGGCATCTCAGACA CCGGACGAAGCGGGAGGCGGAGCCGTGACGACAGCAGAGGGCATGCTGGG AGAGACGATAGCGAGCTTCAGCGGAGTAACAACGGTAATGACGCATCGCC TCCGAGGAGAAAGAGACCCAGGGACAACGACTACGATGATGCATCTCCTC CGCGCAGACGGGGGGAGCAACGAGGCAGTGGCAGTGGCGGGCGCAACCGT AGCGATGCTGATGGTAATGATGCCTCCCCTCCAAGGAGAAGAGGGCATGG TGGTGGTGCTAGTAGTAACGATAGCGGTAGCAACAACGGTGGCGACAGGC GTAGAAGGAGTAGGAGCCCTGCTGCTACCGCCGACCGGGGTGGTGCTTCT GATTCTGATCCATCCCCACCCAGGCGGCGAAACCGGCATTCGCTTGGCAG AGGAGAGACGGAGGGGGGCAGGGAGGGTCGCAGACGACGGCATGATTCGC CTGAGGAGAGAGAGGTCGGTGGGATCGGCGCTTCTGCGAAGGGGTCTGGA GGAGGAGGAGGAGGAGGAGAGCGAGAGCGGGGTGAGGGGGCGGACGGGGG GGGCGGCGGCGGCGGCGGCGGCGAGCGCGCGAGGACTGCGAGCGGGTATC ACGCAGGGCTGCAATCCGGGAAGGACTTCAAGGTCGTCGAGCAGGAGCTC AAGCGCAAGCACGTGAGAGTCCTTCTGTTTTAGACTGTGTCTCCCCGCCA ATGGTACGTATATTGTTTTTAGGGTTTGTCAAGGGACGGTGGGACGAGAC AAGACCGGGATATTTAATTTATAAAGAGACGAGATGACAAAAATTGGTAT TTGACATTGCGGTTGAGATTTTGTCGGGATGAGACGGGATGAGACCATCG TCTCTTTATCACGTGAGGGTCCCGTGGTTCTGTGATAAGCCCTACTTTTT TTCACTGGGTGGGTTTTGAGTGGATAGCATAACCTGGCCGGTCATGTAGA CAAGGTAGGTGTTCTGGGTAAGCACGTGTTTGGCTGTGCTTTTCAGTAGA TATGGATGTCCTCTCGCTTGAAATATTACAGAACCTCGTGTGTGGTCACC TTTTCCAGTTACAGCACTTGGCCTGTTGTGTTCGATTTGTCGCTTTATGG ACACATATGTTGGCTTGAGGCGATGAAATTGTTGAAACGTGAAAACCACC TCCTCAAATTTGTCTCCGTTAAGTGCAGGAGGTTATGGTAATATACGGTG TTATCGCACACCCCTGATACTGTTTGTCAAAATAGATTTTCTCGAGAAGT AAGAGCCTGCACTGCCGATACACCAGTTGTATCGGAAAATCCCGATGAGA TGTTTCCAATGGTACCGCTATAAATTCTTCATCCGTGTCATGAGCACCGT CGTTGTCGACAAAACAGACCCCGAAAAACATTATCGGAGGGTGTGATAAC ACCGTGTGTCAAGGTATTTCGGGGAACAAGAAAAACACATGTGACAAGCA ACAGAAATGCCAAGGACTGCAGCAGTCTTTTTGCGCAAGAACATGTCAAC CGCCAGTTTGTGTGTGATGTATTACCAGGGCTTATCGCCGAACCGGACGG GACGTCAGTCTTGTCCCATCTCGTCCCGGCCGAATCTCAACGGCAGCGTT CCATCCCGAGCCGTCCAAATGTCAACTCTTCTCATCTCGTACGATGACTT GTGGATTTGTGGACTATCCTAGTCCCATCCGTTTTTGTGAGGGTTCCGTA GTCCCGTGAGGATTCCATGGTCCGGTGAGAACTCCAAGGTTCCGTATTTC CTGTCTGTACTGGTGAATAGTCTGTCTGGACAATGAAAGCTTCCAACAAT TCCCCCAATCGCGGCATAGGCGTTGGTTTCCTGTTCCCGAGGTATGGAAT ACTTCAGATGGGCATTTGATGAGAGTAGACTCACTCTGAAGAGGTTAACT GCATTGTGTTTTTCAATGGTTCTTCGCGTCTGACAGATCACACTACAATT TTGAGTCTTGGGCGTGTTGCACACATCGCACAGAACAGCTCCTCGTCCCT GCAGAACTCCGTCGCGAGCATGGTACAGTCAGTGTTCCTGGTAGAAGACC AAACAGAATAGCCAGAAAAGCTTCCTCGTGTCGAGTAAATCGATACAACA GCACGGACTGTTCGAGAGTGTGTTCCATAACGGTACACTTAAGCCGGTAT ACTCATTTGTTCTGTTCTGTCAGACGTGTAAAAGGCTGTCACAGTGCAGA CTCAGTACCAGTATACTGCCCGTTTACTGGATTCGATGAAAGATACATCC GTTACATCCCTCCTTCTCTCCTTCCAATTTTTTTAACATACTCGAAACAT ACTGATCGCATCAAGACCACTATACTGAGTATTTGATGAAACTGGTACTG TAAAATTGTGACGATTTGTGTGTGTGTGCGTGTGTTCTCCCGTCTTCAAC AGGATGCAGAGATGAACAGAGCAGACGCTGAGGCCTCCGGCCGGGGCGCG ACGACAGTGTACCGAGACAAGAAGGGTCGCAAGCTGGACATGCTCAACGA GTTCATGCGCCAGCAAGACGCCAGGGCAGGCAAAGAGGTGAGCAGCTTGG TAATGATTTGACTTTGTCAAGTGCTACGCACTACTGCAATACGTAACTTG TTTGTTTTGGTGGCGACTAGATTCTTTCTGCATCCATCAGTCGATATCAA CCCTTGTTATAAATAATCCCTACACAGTATGCGATTGGTCATGATCCATG TATAGGGTCATCATTCATATCCATATCCATATCCTTGGTCGAACGGTGTA AAAATAAAGGATTGATTTGGCGGTCGCCTTTTAGCGCGCCACGAGTCTGG AATACGTGTATATCAATAAGATGGAAGGAAGGACCCGGAGGGAATTTGTT TTTTGGCGCACCACGTGGGAAAGGCCGTACTTTGTCTTTTTTTTCTTTTT TTTTTTATGCATAGGTATTTGCTAGTAGTACTACGCTGGACGAAAGTGCA GAGTTTGCGCTAGCTTTCAGCCGTGGCAGAAAATTACACAGCCTTATTTT CGCGTGTTACAATATGTTACAACATGAAAGAGCCTTGAGGTTCAGAAGGT TGAGGAATAGAGGGGTAGGACTGATTTTGGTTGGTGGGTTGATTCATGAT TAGTCTGTTGCTTGGTGAATGAGTCTGGTGATGGGTTTGTGCGACGAAAT GACACACAGGTGGCCACGGCGGAGGCGCAGTATGCGTGGGGGCGCGGCAA GGTCCAAAAGGACAAGGAGAAGGAGTGGCAAGAGGAAATCCAGAATATTG CGGCTGAGCCGTTTGCTCGCACCATTGACGACTCCCGCCTGGAAGCGGAG AGAAAAGCAGAGATTCGGCCCGATGATCCTATGGCTGCCTACATAGCAAA GGTGTGTATGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTTTGTGTGTTTTTGTCACCCCTGAATTTTGTCCTTTTGCT CCCATTGTTAGTTTTGGTTTTGTGAATCTTGCCAAGTCTAAGTATTTTTT ATTCTTTTATTTTTTTTGGGGTGGGGGGAGGGGGAGGGAAACTGGGATGC ATTCTATTTTTTTTGGTTCTTGTGTTTTTCAGCAGAAATGTTTTACCCCC TGGACATTCACAAATAATTGGCGTATTCGCCACAAAGATTTCGAAGTATT CGCCTGACTTTCAGAATAGGCTGACACATGAAAAAAAGCACCCGCCACCC CGGTCCATTCGATTTACGAGAATCATTAGCAGTCGTGGATGGTCTGGGGC ACATAGAATACACGAGTTCATTCTGAAACTCTGGCGAATAATTCTTCATT TTCGAGGCGAATCCGCCAGTTATTCGTATTTGTTGGGGTGGTGAAATGTT TACTTTGAAGTGTACCTACGAGTAAGAGCTTTGTTTCTTCGTATCACGTG TTTGTTTTTTGTTTCTTTTCCAATAACTTGGGGGGGGGGGGGGTTATGTT TTCTTCACCACTGAAGACTTCCTTTGAACCCTGTCCTCTTCAAGATGTTG ATTGTGAACTGAGGAGAGTTTTGGTCGCGTGCTCAACGTCGTGTCCGCGT TTGCTCAGTGTCACAAGGCAGGAAATATTAGCTCCATACCATATATCGCG ATGTTGCTGCAGTCGATCGTGATGCATGTGTTCTGAGAAATCCAGCCTAT CACGAGCGGCGTTTTTTTTAGTGCATCCAGCACATGAGATGCCCTCCATA AAAACAAACTGATTTTTTTTGCTAGAGAGGCGTTTTTTTTTTTTTTTCCC CAATCCTGGTACGTTTTCGCCCCGGTTACGTTGATTGCGCTTTTCTTCTC ACCTGTCCCTCTTCATGGTCCTTTGTGTCTTCATTTGTAGATGTTTTTGA TTTTATTAATTTGTCTCTTATTCTCCGTATTCATTCTAACACATATATTT TCTCCTTTTGCCTTTTTTTTTTTTGGTCCCCCCTCCCCCGCTCCCCCCAA ACAGAAGCAGAAAAAACAACAAATCAAAAGTGGGGTCCCCGCCAAACCGG AGTACAAGGGCCCGCCCCCCAAACCAAACAGGTGAAAAAAAAGAAGTTGC TGTGTGTGTTGGTGAAAAGTGAAACATTTTTTTTTTTTTTCTGTATTCTT ATTTTTGAAATCATTGCAATTGAAAACACTTCCGCAAAATATCCTCCTGA ATAGTACCCACCGTCCACCCCCTCCCCCCTCCATCTTGTTCGTGTTCGGG TGTTTGTTAATTAGTACATCCAGTATTCAACGTCTTTGTTATATAGTTGC GAAACATGGGTACACCCCCTAGTTTGGTCAGTTTGTGGATAATAATCAAG TAATCCAGCTGCTTGAAGATGCTGAGCATACCCCCGTGTTCTAGATTACC CGCAGTGTCACCGCGGAGATGTGGTACTGCAGCAGTGCTATCTGTTTTTT TTTCGAGTCGTTGTGCCCAACTCTTCTCACTGTATCATGTTGGTTGGGCT GTCCAGCTAACTGGCACCACTCGATGAAAACCAATGTGTCCACTGCGGTC TATCAGCTGTTCTGCGTCCACATCAAGCACACCCAGCGTTGTGGATGCAG CAACCAGCCGTGGACGTACGTGAAATGGAAATCGTCTCTGTCGACCCCTG TCCCACCTGGCGTGCGTGAAGCCTGTAAAAATGTACGATATATGAATCAT TTTGTGTCTTTTGATACTATTTTTTTAAACTGTGTTTTCGACAGACCCCC CCTCCTACCCCCCCCTCCCTTCCCCCCTCCCCACCACGTCCGGGTACCCT TGCTTTCAAGGTTCAATATCCGCCCGGGCTACCGATGGGACGGCGTCGAC CGCGGAAATGGATGGGAGGATAAAATCGTAGCGAAGGCAGTAGATGGGCA GTACAAGGCAGACCTGGCCTATAAGTGGGCCACTGCAGACATGTAAATCC GATATCCAGATTTGTATTTCAGCCTGACCTTGGCATATTTGAAGCCAAGG CCTATTGTTCAAACCCGTCGGTCGAAGATGAGCACATTTCGTCTGATTGC GACTAGGGCGCCGCGCCGGCTATGGTCTTCGAGCAGGCACCGGACGGGGG GAGCAGGCATCGGATCGGTGGGGGGCGGGGGCTGTGCCTGCTAAAGGGAG GCTGTACCTGAAAGTTGCGTATACTCATCCGCGATGACCCGTAAGAAGAT GCATTGGCGAGAGTGGGGAAGTTTACTTGTGGAAAAGATGGTTTAAGGTG GTGGTGGTGGTTGTTGTCGAGTGCTGCTGTGGAAAGTGTGTTGGGTGGGA CGGACCACGCCAGAAAGTCGATACAGTGGCCAACGTTCATTGCACTTACC GCAGTATATTACCTCGTGTTTCAACTGAGTAGTTCGACTCTTGACTGATT GTAAAGCAAAAAAAATCCGAGTTTTCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2464:4371..16048+

>mRNA_H-paniculata_contig2464.6682.1 ID=mRNA_H-paniculata_contig2464.6682.1|Name=mRNA_H-paniculata_contig2464.6682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3798bp|location=Sequence derived from alignment at H-paniculata_contig2464:4371..16048+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTCAAAGCTGGACTACCTAAAGAAGTATGGAGATGAACTCAAAGC
TGGACTACCTAAAGAAGTATGGAGACGTCGGTGGTGGTGGTGGCGATGGT
GGTGACGGTGACGGTACTAAAAAAAAGAGACGCAAGAAGGGAGCCAAGGG
CGCCGCCGGGCAGGATGTGAGGACAGGGGGGCTCCGTATCGTCGACGACG
AGGCTGACATGGTGATGCTCGATAGGAGGAAGGTGAACAAGGCGTGGGAG
GATCCCGAAGCCGAAGACGTCGGTGGTGGTGGTGGCGATGGTGGTGACGG
TGACGGTACTAAAAAAAAGAGACGCAAGAAGGGAGCCAAGGGCGCCGCCG
GGCAGGATGTGAGGACAGGGGGGCTCCGTATCGTCGACGACGAGGCTGAC
ATGGTGATGCTCGATAGGAGGAAGGTGAACAAGGCGTGGGAGGATCCCGA
AGCCGAAGAGGAGAAACCAGTCGTGGTTCTAGACGACCCAGAAGACCGCA
AGATCGCCGAAACAGGATCATGGACCACTGTTGGCGTCGGTGGCGGCGGC
GGAAATTCTAACCATGGCTGTAGTAGTAACACCATCGAAGAAGATACATC
GCCCGTGAGGCGAAGAAAGCGTCACGACAGCTTCGAAGAAGATACTTCGC
CGCCCCGTCGACCTCCCAGAAATACCTCCGGTGGCGGTGGCGGCGGCGAC
GGCAAAGGTAGGGGTGGCGGTACTCAGAAAGATGCATCGCCACCAAGGAG
GAGGAACCGGCACGATAGTAGCAGCAGCGGCAGCAACAGTTCCAGGGAAG
ACGACGCCTCGCCCCCTCGTAGAAAACAACACGGTGGTGGTGGGAGGATG
GGCGCTGCGTCAAGCGATAGTGCCTGTGCGCCTGAAGGAGAAACCAGTCG
TGGTTCTAGACGACCCAGAAGACCGCAAGATCGCCGAAACAGGATCATGG
ACCACTGTTGGCGTCGGTGGCGGCGGCGGAAATTCTAACCATGGCTGTAG
TAGTAACACCATCGAAGAAGATACATCGCCCGTGAGGCGAAGAAAGCGTC
ACGACAGCTTCGAAGAAGATACTTCGCCGCCCCGTCGACCTCCCAGAAAT
ACCTCCGGTGGCGGTGGCGGCGGCGACGGCAAAGGTAGGGGTGGCGGTAC
TCAGAAAGATGCATCGCCACCAAGGAGGAGGAACCGGCACGATAGTAGCA
GCAGCGGCAGCAACAGTTCCAGGGAAGACGACGCCTCGCCCCCTCGTAGA
AAACAACACGGTGGTGGTGGGAGGATGGGCGCTGCGTCAAGCGATAGTGC
CTGTGCGCCTGATCGGGACAACAACGGCAGCAACGCAAGGCTTATTGCAA
GTGAAGAAAACGCCTCACCGCCAAGGAAAACCTCGAGTAGGAGCAGTCGC
CATGGCGGCGGCGGCATCTCAGACACCGGACGAAGCGGGAGGCGGAGCCG
TGACGACAGCAGAGGGCATGCTGGGAGAGACGATAGCGAGCTTCAGCGGA
GTAACAACGGTAATGACGCATCGCCTCCGAGGAGAAAGAGACCCAGGGAC
AACGACTACGATGATGCATCTCCTCCGCGCAGACGGGGGGAGCAACGAGG
CAGTGGCAGTGGCGGGCGCAACCGTAGCGATGCTGATGGTAATGATGCCT
CCCCTCCAAGGAGAAGAGGGCATGGTGGTGGTGCTAGTAGTAACGATAGC
GGTAGCAACAACGGTGGCGACAGGCGTAGAAGGAGTAGGAGCCCTGCTGC
TACCGCCGACCGGGGTGGTGCTTCTGATTCTGATCCATCCCCACCCAGGC
GGCGAAACCGGCATTCGCTTGGCAGAGGAGAGACGGAGGGGGGCAGGGAG
GGTCGCAGACGACGGCATGATTCGCCTGAGGAGAGAGAGTCGGGACAACA
ACGGCAGCAACGCAAGGCTTATTGCAAGTGAAGAAAACGCCTCACCGCCA
AGGAAAACCTCGAGTAGGAGCAGTCGCCATGGCGGCGGCGGCATCTCAGA
CACCGGACGAAGCGGGAGGCGGAGCCGTGACGACAGCAGAGGGCATGCTG
GGAGAGACGATAGCGAGCTTCAGCGGAGTAACAACGGTAATGACGCATCG
CCTCCGAGGAGAAAGAGACCCAGGGACAACGACTACGATGATGCATCTCC
TCCGCGCAGACGGGGGGAGCAACGAGGCAGTGGCAGTGGCGGGCGCAACC
GTAGCGATGCTGATGGTAATGATGCCTCCCCTCCAAGGAGAAGAGGGCAT
GGTGGTGGTGCTAGTAGTAACGATAGCGGTAGCAACAACGGTGGCGACAG
GCGTAGAAGGAGTAGGAGCCCTGCTGCTACCGCCGACCGGGGTGGTGCTT
CTGATTCTGATCCATCCCCACCCAGGCGGCGAAACCGGCATTCGCTTGGC
AGAGGAGAGACGGAGGGGGGCAGGGAGGGTCGCAGACGACGGCATGATTC
GCCTGAGGAGAGAGAGGGGGCGGACGGGGGGGGCGGCGGCGGCGGCGGCG
GCGAGCGCGCGAGGACTGCGAGCGGGTATCACGCAGGGCTGCAATCCGGG
AAGGACTTCAAGGTCGTCGAGCAGGAGCTCAAGCGCAAGCACGGGGCGGA
CGGGGGGGGCGGCGGCGGCGGCGGCGGCGAGCGCGCGAGGACTGCGAGCG
GGTATCACGCAGGGCTGCAATCCGGGAAGGACTTCAAGGTCGTCGAGCAG
GAGCTCAAGCGCAAGCACGATGCAGAGATGAACAGAGCAGACGCTGAGGC
CTCCGGCCGGGGCGCGACGACAGTGTACCGAGACAAGAAGGGTCGCAAGC
TGGACATGCTCAACGAGTTCATGCGCCAGCAAGACGCCAGGGCAGGCAAA
GAGGATGCAGAGATGAACAGAGCAGACGCTGAGGCCTCCGGCCGGGGCGC
GACGACAGTGTACCGAGACAAGAAGGGTCGCAAGCTGGACATGCTCAACG
AGTTCATGCGCCAGCAAGACGCCAGGGCAGGCAAAGAGGTGGCCACGGCG
GAGGCGCAGTATGCGTGGGGGCGCGGCAAGGTCCAAAAGGACAAGGAGAA
GGAGTGGCAAGAGGAAATCCAGAATATTGCGGCTGAGCCGTTTGCTCGCA
CCATTGACGACTCCCGCCTGGAAGCGGAGAGAAAAGCAGAGATTCGGCCC
GATGATCCTATGGCTGCCTACATAGCAAAGGTGGCCACGGCGGAGGCGCA
GTATGCGTGGGGGCGCGGCAAGGTCCAAAAGGACAAGGAGAAGGAGTGGC
AAGAGGAAATCCAGAATATTGCGGCTGAGCCGTTTGCTCGCACCATTGAC
GACTCCCGCCTGGAAGCGGAGAGAAAAGCAGAGATTCGGCCCGATGATCC
TATGGCTGCCTACATAGCAAAGAAGCAGAAAAAACAACAAATCAAAAGTG
GGGTCCCCGCCAAACCGGAGTACAAGGGCCCGCCCCCCAAACCAAACAGA
AGCAGAAAAAACAACAAATCAAAAGTGGGGTCCCCGCCAAACCGGAGTAC
AAGGGCCCGCCCCCCAAACCAAACAGGTTCAATATCCGCCCGGGCTACCG
ATGGGACGGCGTCGACCGCGGAAATGGATGGGAGGATAAAATCGTAGCGA
AGGCAGTAGATGGGCAGTACAAGGCAGACCTGGCCTATAAGTGGGCCACT
GCAGACATGTAAGTTCAATATCCGCCCGGGCTACCGATGGGACGGCGTCG
ACCGCGGAAATGGATGGGAGGATAAAATCGTAGCGAAGGCAGTAGATGGG
CAGTACAAGGCAGACCTGGCCTATAAGTGGGCCACTGCAGACATGTAA
back to top