mRNA_H-paniculata_contig24635.6681.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24635.6681.1
Unique NamemRNA_H-paniculata_contig24635.6681.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24635.6681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24635contigH-paniculata_contig24635:1834..2276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24635.6681.1prot_H-paniculata_contig24635.6681.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24635 1845..2186 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.7591052-UTR-H-paniculata_contig24635:1833..18441622929716.7591052-UTR-H-paniculata_contig24635:1833..1844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24635 1834..1844 +
1691480980.393492-UTR-H-paniculata_contig24635:1833..18441691480980.393492-UTR-H-paniculata_contig24635:1833..1844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24635 1834..1844 +
1622929716.809074-UTR-H-paniculata_contig24635:2186..22761622929716.809074-UTR-H-paniculata_contig24635:2186..2276Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24635 2187..2276 +
1691480980.416484-UTR-H-paniculata_contig24635:2186..22761691480980.416484-UTR-H-paniculata_contig24635:2186..2276Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24635 2187..2276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.7761118-CDS-H-paniculata_contig24635:1844..21861622929716.7761118-CDS-H-paniculata_contig24635:1844..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24635 1845..2186 +
1691480980.4075837-CDS-H-paniculata_contig24635:1844..21861691480980.4075837-CDS-H-paniculata_contig24635:1844..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24635 1845..2186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24635.6681.1

>prot_H-paniculata_contig24635.6681.1 ID=prot_H-paniculata_contig24635.6681.1|Name=mRNA_H-paniculata_contig24635.6681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MRTRTYSHTGKSRCRDRGGGLRDDSGDRRHSNPHHGRAVYKMNALPVCFK
YGRKRGNCALGGGMKDGASAPLAALAIGRCRRGDNMVGRADTGYCCGVKI
GYLSRFRCHGSKQ*
back to top

mRNA from alignment at H-paniculata_contig24635:1834..2276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24635.6681.1 ID=mRNA_H-paniculata_contig24635.6681.1|Name=mRNA_H-paniculata_contig24635.6681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=443bp|location=Sequence derived from alignment at H-paniculata_contig24635:1834..2276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACCACAAGAATGCGCACCAGAACATACTCGCATACAGGGAAGTCGAGA
TGTCGCGATAGAGGCGGGGGATTGCGAGATGACTCGGGGGATAGAAGACA
CAGCAACCCCCACCACGGTAGAGCCGTCTACAAGATGAATGCTTTGCCTG
TTTGTTTCAAATACGGTCGGAAGCGGGGAAACTGCGCCCTCGGTGGAGGT
ATGAAGGACGGCGCCAGCGCACCCCTCGCCGCCCTCGCAATTGGCCGTTG
CAGACGCGGGGATAACATGGTTGGTAGGGCTGATACAGGGTATTGTTGCG
GGGTCAAGATCGGCTACCTGTCGAGGTTCAGGTGTCATGGGAGCAAGCAA
TGACGTCTCGTTGGACGTCCCGCTAGTATCGGGGGTGATCTTCTCCGGAG
CTGGCGTCATTTGCGATGCCTTGTCAGCTGAGGATTGGAAGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig24635:1834..2276+

>mRNA_H-paniculata_contig24635.6681.1 ID=mRNA_H-paniculata_contig24635.6681.1|Name=mRNA_H-paniculata_contig24635.6681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig24635:1834..2276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCACCAGAACATACTCGCATACAGGGAAGTCGAGATGTCGCGATAG
AGGCGGGGGATTGCGAGATGACTCGGGGGATAGAAGACACAGCAACCCCC
ACCACGGTAGAGCCGTCTACAAGATGAATGCTTTGCCTGTTTGTTTCAAA
TACGGTCGGAAGCGGGGAAACTGCGCCCTCGGTGGAGGTATGAAGGACGG
CGCCAGCGCACCCCTCGCCGCCCTCGCAATTGGCCGTTGCAGACGCGGGG
ATAACATGGTTGGTAGGGCTGATACAGGGTATTGTTGCGGGGTCAAGATC
GGCTACCTGTCGAGGTTCAGGTGTCATGGGAGCAAGCAATGAATGCGCAC
CAGAACATACTCGCATACAGGGAAGTCGAGATGTCGCGATAGAGGCGGGG
GATTGCGAGATGACTCGGGGGATAGAAGACACAGCAACCCCCACCACGGT
AGAGCCGTCTACAAGATGAATGCTTTGCCTGTTTGTTTCAAATACGGTCG
GAAGCGGGGAAACTGCGCCCTCGGTGGAGGTATGAAGGACGGCGCCAGCG
CACCCCTCGCCGCCCTCGCAATTGGCCGTTGCAGACGCGGGGATAACATG
GTTGGTAGGGCTGATACAGGGTATTGTTGCGGGGTCAAGATCGGCTACCT
GTCGAGGTTCAGGTGTCATGGGAGCAAGCAATGA
back to top