mRNA_H-paniculata_contig2463.6679.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2463.6679.1
Unique NamemRNA_H-paniculata_contig2463.6679.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.160e-35
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   19 FEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIADIVDIGEDPVREG-GYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            F VGDYV+ ARVR+ G TPKL  TWTGPWRV+     HV  VQ +V G  + VH  R+R YAD  L+V  D++ VF+ +  QGE E+  I++IG  P  +G GY+V V W G +  E+ +W+PLS I++D P +L++
Sbjct:   15 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDED-TWQPLSDIYQDAPQFLKQ 148          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.470e-33
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   19 FEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIADIVDIGEDPVREG-GYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            F VGDYV+ ARVR+ G TPKL  TWTGPWRV+     HV  VQ +V G  + VH  R+R YAD  L+V  D++ VF+ +  QGE E+  I++IG  P  +G GY+V V W G +  E+ +W+PLS I++D P +L++
Sbjct:  270 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDED-TWQPLSDIYQDAPQFLKQ 403          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 7.920e-32
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   19 FEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIADIVDIGEDPVREG-GYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            F VGDYV+ ARVR+ G TPKL  TWTGPWRV+     HV  VQ +V G  + VH  R+R YAD  L+V  D++ VF+ +  QGE E+  I++IG  P  +G GY+V V W G +  E+ +W+PLS I++D P +L++
Sbjct: 1493 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDED-TWQPLSDIYQDAPQFLKQ 1626          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: G4ZIL9_PHYSP (Chromo domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZIL9_PHYSP)

HSP 1 Score: 90.9 bits (224), Expect = 2.750e-20
Identity = 57/141 (40.43%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    7 RMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQG-EFEIADIVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            R+ANF+VGDYVL +RV +  +  KL+ TW GP++++G D  H  +VQ +VTGA   VHA R++ YAD S +V  ++R   E    QG    +A++ +   +  +   Y +LV W GL+  E+ SWE LS ++KD+P  +R+
Sbjct:   24 RVANFDVGDYVLRSRVDQKHND-KLLVTWIGPYQIVGADE-HSFRVQHLVTGAESDVHASRLKFYADASFEVTEEIR---EHVAAQGIVLTVAELKEHRWNSAKRC-YEILVGWKGLEPIED-SWESLSSLYKDIPVMVRQ 157          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: G4YEE3_PHYSP (Chromo domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEE3_PHYSP)

HSP 1 Score: 91.3 bits (225), Expect = 6.440e-20
Identity = 56/145 (38.62%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGE----FEIADIVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLR 423
            G +  NF +GDYVL  R+       KL   W GP+RV+G   A+  +++ +++GAT+ VHA R++ YAD SLD+    RA  E  EH       F +A   +  + P     Y VLV W GL+  E+ SWEP++ +H+DVP  L+
Sbjct:   22 GAQQENFHIGDYVLWPRIDSEVHVNKLAVKWIGPYRVIGAQ-ANSFEIEHLLSGATRRVHASRLKMYADSSLDL----RAFGEILEHIANQDVYFTVASFKEHRKHPAH--SYEVLVAWEGLEEIED-SWEPMTTMHEDVPVKLQ 158          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6A3QFJ8_9STRA (Chromo domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QFJ8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.280e-17
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVR----------AVFEATEHQGEFEIADIVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            G  + NF  GD VL +RV +     KL+ TW GP+RV+  D AH   +Q ++ GA  GVHA R++ YAD SLDV  D+R          A+ +  EH+   +I D             Y VLV+W GL+  E+ S+EPL+ + +DVP  + +
Sbjct:  104 GENVINFTEGDNVLRSRVDEKSGN-KLLVTWVGPYRVLRAD-AHSFLIQHLIMGAELGVHATRLKFYADASLDVTEDLREHISSQGIVLAIEKLKEHRWNHQIRD-------------YEVLVQWKGLETIED-SYEPLTSLARDVPVLVAK 239          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6A3DG06_9STRA (Chromo domain-containing protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DG06_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.480e-17
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMD----------VRAVFEATEHQGEFEIADIVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            G  + NF  GD VL +RV +     KL+ TW GP+RV+  D AH   +Q ++ GA  GVHA R++ YAD SLDV  +          V A+ +  EH+   +I D             Y VLV+W GL+A E+ S+EPL+ + +DVP  + +
Sbjct:  104 GENVINFTEGDNVLRSRVDEKSGN-KLLVTWVGPYRVLRAD-AHSFLIQHLIMGAELGVHATRLKFYADASLDVTEELCEHISSQGIVLAIEKLKEHRWNDQIRD-------------YEVLVQWKGLEAIED-SYEPLTSLARDVPVLVAK 239          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6G0XU29_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU29_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = 1
Query:    1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIAD-IVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            G +MA F+VGDYVL   V  + S  KL  TW GP +V+   S  + ++Q ++TG  +  HA R++ YAD SL+V  ++        H     + D +VD    P +   + VLV W GL+  E  SWEP + + +D+P  L+R
Sbjct:   89 GVKMAEFDVGDYVLYMDVWGV-SPSKLNVTWRGPAQVVKATSGWMFEIQNLITGIVREAHASRLKFYADESLNVDEEL---LSHVAHNANGHVVDHLVDCRFKP-KTAAFEVLVSWRGLEEVEN-SWEPATNLQEDIPVVLKR 225          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6G0XEE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEE8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.860e-15
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query:    1 GRRMANFEVGDYVLTARVRKLGSTP-KLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIAD-IVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            G +MA F+VGDYVL   V   G  P KL  TW GP +V+   S  + ++Q ++TG  +  HA R++ YAD SL+V  ++        H  +  I D +VD   +P +   + VLV W GL   E  SWEP + + +D+P  L+R
Sbjct: 1437 GVKMAEFDVGDYVLYMEV--WGVCPSKLNVTWRGPAQVVKATSGWIFEIQNLITGIVREAHAGRLKFYADESLNVDEEL---LSHVAHNADGHIVDHLVDCRFNP-KTAAFEVLVSWRGLQEIEN-SWEPATNLQEDIPVVLKR 1573          
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6G0WCW3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCW3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.090e-15
Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = 1
Query:    1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIAD-IVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
            G +MA F+VGDYVL   V  + S  KL  TW GP  V+   S  + ++Q ++TG  +  HA R++ YAD SL+V  ++        H  +  + D +VD   +P +   + VLV W GL   E  SWEP + + +D+P  L+R
Sbjct:  170 GVKMAEFDVGDYVLYMDVWGV-SPSKLNVTWRGPAHVVKATSGWIFEIQNLITGIMREAHASRLKLYADESLNVDEEL---LSHVAHNADGHVIDHLVDCRFNP-KTAAFEVLVSWSGLQEIEN-SWEPATNLLEDIPVVLKR 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE3.160e-3547.45Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE8.470e-3347.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE7.920e-3247.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
G4ZIL9_PHYSP2.750e-2040.43Chromo domain-containing protein n=1 Tax=Phytophth... [more]
G4YEE3_PHYSP6.440e-2038.62Chromo domain-containing protein n=1 Tax=Phytophth... [more]
A0A6A3QFJ8_9STRA4.280e-1737.50Chromo domain-containing protein n=3 Tax=Phytophth... [more]
A0A6A3DG06_9STRA5.480e-1737.50Chromo domain-containing protein n=5 Tax=Phytophth... [more]
A0A6G0XU29_9STRA1.390e-1536.36Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6G0XEE8_9STRA2.860e-1537.50Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0WCW3_9STRA4.090e-1536.36Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2463contigH-paniculata_contig2463:9454..9879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2463.6679.1prot_H-paniculata_contig2463.6679.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2463 9463..9663 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.4444373-UTR-H-paniculata_contig2463:9453..94621622929716.4444373-UTR-H-paniculata_contig2463:9453..9462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2463 9454..9462 +
1691480980.2898958-UTR-H-paniculata_contig2463:9453..94621691480980.2898958-UTR-H-paniculata_contig2463:9453..9462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2463 9454..9462 +
1622929716.486094-UTR-H-paniculata_contig2463:9663..98791622929716.486094-UTR-H-paniculata_contig2463:9663..9879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2463 9664..9879 +
1691480980.3097708-UTR-H-paniculata_contig2463:9663..98791691480980.3097708-UTR-H-paniculata_contig2463:9663..9879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2463 9664..9879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.4691737-CDS-H-paniculata_contig2463:9462..96631622929716.4691737-CDS-H-paniculata_contig2463:9462..9663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2463 9463..9663 +
1691480980.2996337-CDS-H-paniculata_contig2463:9462..96631691480980.2996337-CDS-H-paniculata_contig2463:9462..9663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2463 9463..9663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2463.6679.1

>prot_H-paniculata_contig2463.6679.1 ID=prot_H-paniculata_contig2463.6679.1|Name=mRNA_H-paniculata_contig2463.6679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVT
GATKGVHAVRVRPYAD*
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mRNA from alignment at H-paniculata_contig2463:9454..9879+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2463.6679.1 ID=mRNA_H-paniculata_contig2463.6679.1|Name=mRNA_H-paniculata_contig2463.6679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2463:9454..9879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGCGAATGGCGAATTTTGAGGTCGGCGACTATGTCCTGACAGCGCG GGTTCGCAAGCTTGGAAGTACCCCGAAGCTCGTCGGCACGTGGACCGGCC CGTGGCGAGTGATGGGGGGTGACTCGGCGCATGTTAAGAAGGTCCAAGGC GTTGTGACGGGGGCCACAAAGGGCGTGCATGCAGTTCGGGTGCGGCCGTA TGCGGACTAATCACTGGATGTGGGAATGGACGTTCGGGCTGTGTTCGAGG CAACGGAACACCAGGGGGAATTCGAAATCGCCGATATCGTTGACATCGGC GAGGACCCCGTCCGGGAGGGGGGGTACGTGGTACTGGTGGAATGGGTGGG GTTGGACGCTGCCGAGGAGAGGAGTTGGGAACCGCTGTCCCCCATCCATA AGGATGTTCCAGCATACCTGAGGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2463:9454..9879+

>mRNA_H-paniculata_contig2463.6679.1 ID=mRNA_H-paniculata_contig2463.6679.1|Name=mRNA_H-paniculata_contig2463.6679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig2463:9454..9879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAATTTTGAGGTCGGCGACTATGTCCTGACAGCGCGGGTTCGCAA
GCTTGGAAGTACCCCGAAGCTCGTCGGCACGTGGACCGGCCCGTGGCGAG
TGATGGGGGGTGACTCGGCGCATGTTAAGAAGGTCCAAGGCGTTGTGACG
GGGGCCACAAAGGGCGTGCATGCAGTTCGGGTGCGGCCGTATGCGGACTA
AATGGCGAATTTTGAGGTCGGCGACTATGTCCTGACAGCGCGGGTTCGCA
AGCTTGGAAGTACCCCGAAGCTCGTCGGCACGTGGACCGGCCCGTGGCGA
GTGATGGGGGGTGACTCGGCGCATGTTAAGAAGGTCCAAGGCGTTGTGAC
GGGGGCCACAAAGGGCGTGCATGCAGTTCGGGTGCGGCCGTATGCGGACT
AA
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