mRNA_H-paniculata_contig2463.6679.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 129 bits (323), Expect = 3.160e-35 Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 19 FEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIADIVDIGEDPVREG-GYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
F VGDYV+ ARVR+ G TPKL TWTGPWRV+ HV VQ +V G + VH R+R YAD L+V D++ VF+ + QGE E+ I++IG P +G GY+V V W G + E+ +W+PLS I++D P +L++
Sbjct: 15 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDED-TWQPLSDIYQDAPQFLKQ 148
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 129 bits (323), Expect = 8.470e-33 Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 19 FEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIADIVDIGEDPVREG-GYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
F VGDYV+ ARVR+ G TPKL TWTGPWRV+ HV VQ +V G + VH R+R YAD L+V D++ VF+ + QGE E+ I++IG P +G GY+V V W G + E+ +W+PLS I++D P +L++
Sbjct: 270 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDED-TWQPLSDIYQDAPQFLKQ 403
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 129 bits (323), Expect = 7.920e-32 Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 19 FEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIADIVDIGEDPVREG-GYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
F VGDYV+ ARVR+ G TPKL TWTGPWRV+ HV VQ +V G + VH R+R YAD L+V D++ VF+ + QGE E+ I++IG P +G GY+V V W G + E+ +W+PLS I++D P +L++
Sbjct: 1493 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDED-TWQPLSDIYQDAPQFLKQ 1626
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: G4ZIL9_PHYSP (Chromo domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZIL9_PHYSP) HSP 1 Score: 90.9 bits (224), Expect = 2.750e-20 Identity = 57/141 (40.43%), Postives = 88/141 (62.41%), Query Frame = 1
Query: 7 RMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQG-EFEIADIVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
R+ANF+VGDYVL +RV + + KL+ TW GP++++G D H +VQ +VTGA VHA R++ YAD S +V ++R E QG +A++ + + + Y +LV W GL+ E+ SWE LS ++KD+P +R+
Sbjct: 24 RVANFDVGDYVLRSRVDQKHND-KLLVTWIGPYQIVGADE-HSFRVQHLVTGAESDVHASRLKFYADASFEVTEEIR---EHVAAQGIVLTVAELKEHRWNSAKRC-YEILVGWKGLEPIED-SWESLSSLYKDIPVMVRQ 157
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: G4YEE3_PHYSP (Chromo domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEE3_PHYSP) HSP 1 Score: 91.3 bits (225), Expect = 6.440e-20 Identity = 56/145 (38.62%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGE----FEIADIVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLR 423
G + NF +GDYVL R+ KL W GP+RV+G A+ +++ +++GAT+ VHA R++ YAD SLD+ RA E EH F +A + + P Y VLV W GL+ E+ SWEP++ +H+DVP L+
Sbjct: 22 GAQQENFHIGDYVLWPRIDSEVHVNKLAVKWIGPYRVIGAQ-ANSFEIEHLLSGATRRVHASRLKMYADSSLDL----RAFGEILEHIANQDVYFTVASFKEHRKHPAH--SYEVLVAWEGLEEIED-SWEPMTTMHEDVPVKLQ 158
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6A3QFJ8_9STRA (Chromo domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QFJ8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 4.280e-17 Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query: 1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVR----------AVFEATEHQGEFEIADIVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
G + NF GD VL +RV + KL+ TW GP+RV+ D AH +Q ++ GA GVHA R++ YAD SLDV D+R A+ + EH+ +I D Y VLV+W GL+ E+ S+EPL+ + +DVP + +
Sbjct: 104 GENVINFTEGDNVLRSRVDEKSGN-KLLVTWVGPYRVLRAD-AHSFLIQHLIMGAELGVHATRLKFYADASLDVTEDLREHISSQGIVLAIEKLKEHRWNHQIRD-------------YEVLVQWKGLETIED-SYEPLTSLARDVPVLVAK 239
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6A3DG06_9STRA (Chromo domain-containing protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DG06_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 5.480e-17 Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query: 1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMD----------VRAVFEATEHQGEFEIADIVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
G + NF GD VL +RV + KL+ TW GP+RV+ D AH +Q ++ GA GVHA R++ YAD SLDV + V A+ + EH+ +I D Y VLV+W GL+A E+ S+EPL+ + +DVP + +
Sbjct: 104 GENVINFTEGDNVLRSRVDEKSGN-KLLVTWVGPYRVLRAD-AHSFLIQHLIMGAELGVHATRLKFYADASLDVTEELCEHISSQGIVLAIEKLKEHRWNDQIRD-------------YEVLVQWKGLEAIED-SYEPLTSLARDVPVLVAK 239
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6G0XU29_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU29_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15 Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIAD-IVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
G +MA F+VGDYVL V + S KL TW GP +V+ S + ++Q ++TG + HA R++ YAD SL+V ++ H + D +VD P + + VLV W GL+ E SWEP + + +D+P L+R
Sbjct: 89 GVKMAEFDVGDYVLYMDVWGV-SPSKLNVTWRGPAQVVKATSGWMFEIQNLITGIVREAHASRLKFYADESLNVDEEL---LSHVAHNANGHVVDHLVDCRFKP-KTAAFEVLVSWRGLEEVEN-SWEPATNLQEDIPVVLKR 225
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6G0XEE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEE8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.860e-15 Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query: 1 GRRMANFEVGDYVLTARVRKLGSTP-KLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIAD-IVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
G +MA F+VGDYVL V G P KL TW GP +V+ S + ++Q ++TG + HA R++ YAD SL+V ++ H + I D +VD +P + + VLV W GL E SWEP + + +D+P L+R
Sbjct: 1437 GVKMAEFDVGDYVLYMEV--WGVCPSKLNVTWRGPAQVVKATSGWIFEIQNLITGIVREAHAGRLKFYADESLNVDEEL---LSHVAHNADGHIVDHLVDCRFNP-KTAAFEVLVSWRGLQEIEN-SWEPATNLQEDIPVVLKR 1573
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Match: A0A6G0WCW3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCW3_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.090e-15 Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 1 GRRMANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTGATKGVHAVRVRPYAD*SLDVGMDVRAVFEATEHQGEFEIAD-IVDIGEDPVREGGYVVLVEWVGLDAAEERSWEPLSPIHKDVPAYLRR 426
G +MA F+VGDYVL V + S KL TW GP V+ S + ++Q ++TG + HA R++ YAD SL+V ++ H + + D +VD +P + + VLV W GL E SWEP + + +D+P L+R
Sbjct: 170 GVKMAEFDVGDYVLYMDVWGV-SPSKLNVTWRGPAHVVKATSGWIFEIQNLITGIMREAHASRLKLYADESLNVDEEL---LSHVAHNADGHVIDHLVDCRFNP-KTAAFEVLVSWSGLQEIEN-SWEPATNLLEDIPVVLKR 306 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2463.6679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2463.6679.1 >prot_H-paniculata_contig2463.6679.1 ID=prot_H-paniculata_contig2463.6679.1|Name=mRNA_H-paniculata_contig2463.6679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp MANFEVGDYVLTARVRKLGSTPKLVGTWTGPWRVMGGDSAHVKKVQGVVTback to top mRNA from alignment at H-paniculata_contig2463:9454..9879+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2463.6679.1 ID=mRNA_H-paniculata_contig2463.6679.1|Name=mRNA_H-paniculata_contig2463.6679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2463:9454..9879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2463:9454..9879+ >mRNA_H-paniculata_contig2463.6679.1 ID=mRNA_H-paniculata_contig2463.6679.1|Name=mRNA_H-paniculata_contig2463.6679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig2463:9454..9879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |