mRNA_H-paniculata_contig2462.6678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2462.6678.1
Unique NamemRNA_H-paniculata_contig2462.6678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2462.6678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2462contigH-paniculata_contig2462:1113..1721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size519
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.13771-UTR-H-paniculata_contig2462:1112..12021622929716.13771-UTR-H-paniculata_contig2462:1112..1202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2462 1113..1202 +
1691480980.1311991-UTR-H-paniculata_contig2462:1112..12021691480980.1311991-UTR-H-paniculata_contig2462:1112..1202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2462 1113..1202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.1537683-CDS-H-paniculata_contig2462:1202..17211622929716.1537683-CDS-H-paniculata_contig2462:1202..1721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2462 1203..1721 +
1691480980.1416764-CDS-H-paniculata_contig2462:1202..17211691480980.1416764-CDS-H-paniculata_contig2462:1202..1721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2462 1203..1721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2462.6678.1prot_H-paniculata_contig2462.6678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2462 1203..1721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2462.6678.1

>prot_H-paniculata_contig2462.6678.1 ID=prot_H-paniculata_contig2462.6678.1|Name=mRNA_H-paniculata_contig2462.6678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MSVRVLNSWYYVSVVTVHFSVHQYVSTSIEVRMFFFQALGAPERNIVTTQ
TCTTQLLQTLCYVHTWRESDKYSPIKFHVESSHPLTHPSIRREINTQASR
LSLFRLTRILTGEGGGGRCHSHKTAANFFSSTFLSQSCTVRVLLSKVDLI
YSIHPSIHPPVPPFSRCLVYSFV
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mRNA from alignment at H-paniculata_contig2462:1113..1721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2462.6678.1 ID=mRNA_H-paniculata_contig2462.6678.1|Name=mRNA_H-paniculata_contig2462.6678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=609bp|location=Sequence derived from alignment at H-paniculata_contig2462:1113..1721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTGAAATTTTGTGCGCATTATATCGCTTGCTCTATTTTCATACGGGAA
GCAACGCTCAAACTAGCTTTAGACCAACAAAGGAAAAGGCATGTCAGTAC
GTGTCTTGAACTCGTGGTATTATGTATCTGTAGTAACTGTTCATTTCAGC
GTTCACCAGTACGTCAGTACATCAATCGAGGTTAGAATGTTTTTTTTTCA
AGCTCTCGGAGCACCAGAGAGGAACATAGTGACTACACAAACATGTACAA
CCCAGTTGCTCCAAACGCTGTGCTACGTGCACACTTGGAGAGAAAGCGAT
AAATACTCCCCAATAAAATTTCATGTCGAGTCATCTCATCCTCTGACCCA
TCCCTCTATCCGTCGAGAAATCAACACGCAAGCAAGTAGACTATCATTAT
TCCGACTAACTAGAATATTGACTGGAGAGGGGGGGGGGGGACGTTGTCAT
TCTCACAAAACCGCTGCCAACTTTTTCTCCTCAACTTTCCTTTCTCAGTC
CTGTACTGTACGCGTGCTACTCAGTAAAGTGGATCTGATCTACAGCATCC
ATCCATCCATCCATCCGCCCGTCCCTCCTTTTTCGCGGTGCCTCGTTTAC
TCCTTCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig2462:1113..1721+

>mRNA_H-paniculata_contig2462.6678.1 ID=mRNA_H-paniculata_contig2462.6678.1|Name=mRNA_H-paniculata_contig2462.6678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig2462:1113..1721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGTACGTGTCTTGAACTCGTGGTATTATGTATCTGTAGTAACTGT
TCATTTCAGCGTTCACCAGTACGTCAGTACATCAATCGAGGTTAGAATGT
TTTTTTTTCAAGCTCTCGGAGCACCAGAGAGGAACATAGTGACTACACAA
ACATGTACAACCCAGTTGCTCCAAACGCTGTGCTACGTGCACACTTGGAG
AGAAAGCGATAAATACTCCCCAATAAAATTTCATGTCGAGTCATCTCATC
CTCTGACCCATCCCTCTATCCGTCGAGAAATCAACACGCAAGCAAGTAGA
CTATCATTATTCCGACTAACTAGAATATTGACTGGAGAGGGGGGGGGGGG
ACGTTGTCATTCTCACAAAACCGCTGCCAACTTTTTCTCCTCAACTTTCC
TTTCTCAGTCCTGTACTGTACGCGTGCTACTCAGTAAAGTGGATCTGATC
TACAGCATCCATCCATCCATCCATCCGCCCGTCCCTCCTTTTTCGCGGTG
CCTCGTTTACTCCTTCGTCATGTCAGTACGTGTCTTGAACTCGTGGTATT
ATGTATCTGTAGTAACTGTTCATTTCAGCGTTCACCAGTACGTCAGTACA
TCAATCGAGGTTAGAATGTTTTTTTTTCAAGCTCTCGGAGCACCAGAGAG
GAACATAGTGACTACACAAACATGTACAACCCAGTTGCTCCAAACGCTGT
GCTACGTGCACACTTGGAGAGAAAGCGATAAATACTCCCCAATAAAATTT
CATGTCGAGTCATCTCATCCTCTGACCCATCCCTCTATCCGTCGAGAAAT
CAACACGCAAGCAAGTAGACTATCATTATTCCGACTAACTAGAATATTGA
CTGGAGAGGGGGGGGGGGGACGTTGTCATTCTCACAAAACCGCTGCCAAC
TTTTTCTCCTCAACTTTCCTTTCTCAGTCCTGTACTGTACGCGTGCTACT
CAGTAAAGTGGATCTGATCTACAGCATCCATCCATCCATCCATCCGCCCG
TCCCTCCTTTTTCGCGGTGCCTCGTTTACTCCTTCGTC
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