prot_H-paniculata_contig24588.6670.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24588.6670.1
Unique Nameprot_H-paniculata_contig24588.6670.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length113
Homology
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BLAST of mRNA_H-paniculata_contig24588.6670.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.100e-23
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 0 
Query:   20 SNYFGVSRQGDKWEVHIGRPSIGAQTNLGLFDREIDAAKQYDKYAKLWLKDPEVNFPRGTTNSRSRG 86
            S Y GV +QG +W  +I RPS+G +TNLG+FD E+DAAKQYDKYA +WLK PEVNFPRG + SR RG
Sbjct: 1439 SKYLGVRKQGSRWVAYIIRPSVGGETNLGVFDEEVDAAKQYDKYANMWLKTPEVNFPRGRSASRFRG 1505
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BLAST of mRNA_H-paniculata_contig24588.6670.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 6.130e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0 
Query:   20 SNYFGVSRQGDKWEVHIGRPSIGAQTNLGLFDREIDAAKQYDKYA 64
            S Y GV +QG +W  +I RPS+G +TNLG+FD E+DAAKQYDKYA
Sbjct: 1096 SKYLGVRKQGSRWVAYIIRPSVGGETNLGVFDEEVDAAKQYDKYA 1140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24588.6670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE1.100e-2365.67CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI6.130e-1264.44CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 21..82
e-value: 0.0019
score: 15.3
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10coord: 20..77
e-value: 1.3E-7
score: 33.3
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 21..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24588contigH-paniculata_contig24588:333..1540 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24588.6670.1mRNA_H-paniculata_contig24588.6670.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24588 331..1540 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24588.6670.1 ID=prot_H-paniculata_contig24588.6670.1|Name=mRNA_H-paniculata_contig24588.6670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
DGDGVVSAGDSKAGKKGSGSNYFGVSRQGDKWEVHIGRPSIGAQTNLGLF
DREIDAAKQYDKYAKLWLKDPEVNFPRGTTNSRSRGNGIPAISNLSHPRL
LSQPPPLPPPRPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR036955AP2/ERF_dom_sf
IPR016177DNA-bd_dom_sf