mRNA_H-paniculata_contig24588.6670.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24588.6670.1
Unique NamemRNA_H-paniculata_contig24588.6670.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24588.6670.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.100e-23
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   58 SNYFGVSRQGDKWEVHIGRPSIGAQTNLGLFDREIDAAKQYDKYAKLWLKDPEVNFPRGTTNSRSRG 258
            S Y GV +QG +W  +I RPS+G +TNLG+FD E+DAAKQYDKYA +WLK PEVNFPRG + SR RG
Sbjct: 1439 SKYLGVRKQGSRWVAYIIRPSVGGETNLGVFDEEVDAAKQYDKYANMWLKTPEVNFPRGRSASRFRG 1505
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BLAST of mRNA_H-paniculata_contig24588.6670.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 6.130e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   58 SNYFGVSRQGDKWEVHIGRPSIGAQTNLGLFDREIDAAKQYDKYA 192
            S Y GV +QG +W  +I RPS+G +TNLG+FD E+DAAKQYDKYA
Sbjct: 1096 SKYLGVRKQGSRWVAYIIRPSVGGETNLGVFDEEVDAAKQYDKYA 1140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24588.6670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE1.100e-2365.67CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI6.130e-1264.44CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24588contigH-paniculata_contig24588:331..1540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue4.4e-10
Seed eggNOG ortholog2880.D7G6J0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size343
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24588.6670.1prot_H-paniculata_contig24588.6670.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24588 333..1540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.9171324-CDS-H-paniculata_contig24588:332..4761622929713.9171324-CDS-H-paniculata_contig24588:332..476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24588 333..476 -
1691480978.9795723-CDS-H-paniculata_contig24588:332..4761691480978.9795723-CDS-H-paniculata_contig24588:332..476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24588 333..476 -
1622929714.1149933-CDS-H-paniculata_contig24588:877..10101622929714.1149933-CDS-H-paniculata_contig24588:877..1010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24588 878..1010 -
1691480978.9946616-CDS-H-paniculata_contig24588:877..10101691480978.9946616-CDS-H-paniculata_contig24588:877..1010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24588 878..1010 -
1622929714.128196-CDS-H-paniculata_contig24588:1478..15401622929714.128196-CDS-H-paniculata_contig24588:1478..1540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24588 1479..1540 -
1691480979.0048819-CDS-H-paniculata_contig24588:1478..15401691480979.0048819-CDS-H-paniculata_contig24588:1478..1540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24588 1479..1540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24588.6670.1

>prot_H-paniculata_contig24588.6670.1 ID=prot_H-paniculata_contig24588.6670.1|Name=mRNA_H-paniculata_contig24588.6670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
DGDGVVSAGDSKAGKKGSGSNYFGVSRQGDKWEVHIGRPSIGAQTNLGLF
DREIDAAKQYDKYAKLWLKDPEVNFPRGTTNSRSRGNGIPAISNLSHPRL
LSQPPPLPPPRPP
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mRNA from alignment at H-paniculata_contig24588:331..1540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24588.6670.1 ID=mRNA_H-paniculata_contig24588.6670.1|Name=mRNA_H-paniculata_contig24588.6670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-paniculata_contig24588:331..1540- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGCGACGGTGTTGTGAGTGCTGGTGATTCTAAGGCTGGCAAGAAGGG
GAGCGGATCGAAGTGAGTGCAAGCTGGTTGCCTAAAGTCTCGGGCGGGTA
ACGCCCCGTCCCCCCGTTGATTTGATTTTGCTGATTAATTTACAACCGGA
GTTTAAGATCAGTTGCATAACCTCAACATGGGTACAGTGGGCTCTTGTAA
TGTGACCTTCAGAGCTGTAGTTTAATTAACTGTGGCGCGGTTAACTTACG
GATGAAAAATTCAGATTGCAGTTTTAATTTTATTCGGTATTGTCGAAATT
TCGGATATGAGCACGTGCGGGTCTTGCTCATGTAGTATTTGTTTCCAATA
TTTTAGTTTTTTTTTTTTTAAGCGCCAACTTCAGCGTGTAACTGCCCCCT
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCGTGTACTGAAAGTAAAATGGC
GGAAGTAGTTGCTAGACCAACCCTTTTTTTTGTTTTTTTCGTGTGTAACT
TTTCTTCTGGGTCTTGTGCTTCGCCGACAGCTATTTTGGAGTCAGCCGGC
AGGGCGACAAGTGGGAAGTGCACATCGGCCGACCCTCGATCGGAGCTCAG
ACCAACCTTGGGCTATTCGACAGAGAAATCGACGCGGCTAAGCAGTATGA
CAAGTACGCCAAGGTACACACCTTCTCGGAACACTAAGTCATCATCCAGT
ATGTTCATTCGGGTTTTTTTCCTTTGGCGAAAAACATGCGCTTGCTTGAC
TTGACAATTGAAATCGTCAAAGAATTGAGTTCACCAAAGGAGTTGTGAAC
TATCCCTATCTCGCCTGAGGATGCTGTACTATAATAGCTTACCTCGTAGT
CAGTACCCGTTAGTAGTTCTTTTCTTGTGGCTGAAGGAATGATTTTTTTT
ACTTGTTCTTCGGTGGGAGATCGAATTTATGAATTCCACGGAAGGGGAAA
AACTCCCCTCAAAATTTCGTCCACAGTGGCGTAGCACTTGGCACGTTTTT
TTTTTTACGGCGTACTCCCTCCGCCTTCCCCCGTCAACCTCTCCTTACCC
CCCCCCCCCTTCAGCTATGGTTGAAGGACCCGGAAGTAAACTTTCCAAGA
GGGACAACGAACAGTCGTTCCCGTGGCAACGGCATCCCAGCTATCTCAAA
TTTGTCCCACCCGCGGTTGTTGTCACAGCCGCCGCCGCTGCCGCCCCCGC
GACCGCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig24588:331..1540-

>mRNA_H-paniculata_contig24588.6670.1 ID=mRNA_H-paniculata_contig24588.6670.1|Name=mRNA_H-paniculata_contig24588.6670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig24588:331..1540- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGCGACGGTGTTGTGAGTGCTGGTGATTCTAAGGCTGGCAAGAAGGG
GAGCGGATCGAAGATGGCGACGGTGTTGTGAGTGCTGGTGATTCTAAGGC
TGGCAAGAAGGGGAGCGGATCGAACTATTTTGGAGTCAGCCGGCAGGGCG
ACAAGTGGGAAGTGCACATCGGCCGACCCTCGATCGGAGCTCAGACCAAC
CTTGGGCTATTCGACAGAGAAATCGACGCGGCTAAGCAGTATGACAAGTA
CGCCAAGCTATTTTGGAGTCAGCCGGCAGGGCGACAAGTGGGAAGTGCAC
ATCGGCCGACCCTCGATCGGAGCTCAGACCAACCTTGGGCTATTCGACAG
AGAAATCGACGCGGCTAAGCAGTATGACAAGTACGCCAAGCTATGGTTGA
AGGACCCGGAAGTAAACTTTCCAAGAGGGACAACGAACAGTCGTTCCCGT
GGCAACGGCATCCCAGCTATCTCAAATTTGTCCCACCCGCGGTTGTTGTC
ACAGCCGCCGCCGCTGCCGCCCCCGCGACCGCCCCTATGGTTGAAGGACC
CGGAAGTAAACTTTCCAAGAGGGACAACGAACAGTCGTTCCCGTGGCAAC
GGCATCCCAGCTATCTCAAATTTGTCCCACCCGCGGTTGTTGTCACAGCC
GCCGCCGCTGCCGCCCCCGCGACCGCCC
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