prot_H-paniculata_contig24584.6669.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig24584.6669.1
Unique Name	prot_H-paniculata_contig24584.6669.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	107

Homology

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: D8LRH8_ECTSI (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH8_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 8.430e-42
Identity = 80/105 (76.19%), Postives = 83/105 (79.05%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VW+HE    LYCEEIDVGE  PR IASGLREH   EE+QG LVLVVCNL+PAK AGF SNGMVLAAK  DGKVELVRPP  SVVGER  VEG   EGEPLTPAQV
Sbjct:  689 VWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAGFASNGMVLAAKSADGKVELVRPPEGSVVGERARVEG--SEGEPLTPAQV 791

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: B8CA55_THAPS (tRNA-binding domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA55_THAPS)

HSP 1 Score: 133 bits (335), Expect = 1.510e-37
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDA-PRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGK-VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VW+HE+A++L+CEEIDVGE+  PR+IASGLREH  L+++Q   VLVVCNL+PAK+ GF SNGMVLAAK  DGK VELV PPA + VGERV ++GL   GEP +  QV
Sbjct:   35 VWNHEEADKLFCEEIDVGEEGGPREIASGLREHYSLDDMQDRKVLVVCNLKPAKIVGFTSNGMVLAAKSEDGKSVELVTPPADAAVGERVFIDGLS--GEPFSSTQV 139

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A7S1D9R7_CYCTE (Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9R7_CYCTE)

HSP 1 Score: 139 bits (351), Expect = 1.880e-36
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VWHH+ A+ L+CEEIDVGE  PRQIASGLR+H  LE++ G  VLVVCNL+PA++ GF SNGMVLAAK  DGKVELV PP ++ VGERVA++GL+  G P +PAQV
Sbjct:  495 VWHHQAADNLFCEEIDVGEGDPRQIASGLRQHYTLEDMDGKKVLVVCNLKPARIVGFTSNGMVLAAK-LDGKVELVVPPDSAEVGERVAIKGLD--GNPFSPAQV 596

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A812XFC2_SYMMI (AIMP1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XFC2_SYMMI)

HSP 1 Score: 131 bits (330), Expect = 1.040e-35
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGL 94
            VW+HE+A RL+CEEIDVGED PRQIASGLR+H  LE++    V+VVCNL+ AKL GF SNGMVLAAK  DG+V+LV PP  +VVGERV +EG+
Sbjct:  129 VWNHEKAERLFCEEIDVGEDVPRQIASGLRDHYSLEDMHNRKVIVVCNLKEAKLVGFSSNGMVLAAKCADGQVQLVAPPEDAVVGERVFIEGI 221

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A7S1H2S0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2S0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.140e-35
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDA-PRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VW+HE ANRL+CEEID+GE++ PRQIASGLREH  LE++    VLVVCNL+PAK+ GF+SNGMVLAAK  D KVELV PP  + +GERV + GL+  G+PL+  Q+
Sbjct:   59 VWNHEDANRLFCEEIDIGEESGPRQIASGLREHYTLEQMHDRKVLVVCNLKPAKIVGFLSNGMVLAAKQGD-KVELVEPPKDTSIGERVFISGLD--GDPLSSTQM 161

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A1E7FWM2_9STRA (Methionine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWM2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.670e-35
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDA-PRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGK-VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VW+HE A++L+CEE+DVGE++ PRQIASGLREH  LEE+Q  LVLVVCNL+ AK+ GF SNGMVLAAKG DGK VELV PP  S +GERV ++GL   GEP + +QV
Sbjct:  631 VWNHESADKLFCEEVDVGEESGPRQIASGLREHYSLEEMQDKLVLVVCNLKAAKIVGFSSNGMVLAAKGEDGKKVELVEPPQGSKIGERVFIDGLS--GEPFSSSQV 735

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A397BX65_9STRA (tRNA-binding domain-containing protein (Fragment) n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BX65_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.600e-34
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGT--DGK--VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VW HE A++LYCEEIDVGEDAPRQIASGL +H  LE++QG LVLV+CNL+   L GF S+GMVL A  T  DG   +  V PPA +VVGERV  +GL   GEP TPAQV
Sbjct:   67 VWKHETADKLYCEEIDVGEDAPRQIASGLVKHYTLEQMQGRLVLVMCNLKARNLVGFKSHGMVLCAVATNADGSESIAFVEPPAGAVVGERVTYDGLTG-GEPWTPAQV 174

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A835YVV0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.010e-33
Identity = 68/111 (61.26%), Postives = 78/111 (70.27%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDA------PRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VWHH  + +L+CEEI+ G+        PR +ASGLR H  L E+   LV VVCNL+PAKLAGF SNGMVLAA G  GKVEL+RPPA SVVGER+ VEGL   G PL P QV
Sbjct:   15 VWHHPDSEKLFCEEIECGDGGDGQGAPPRPVASGLRAHHTLAEMDQRLVCVVCNLKPAKLAGFESNGMVLAASG-GGKVELIRPPAGSVVGERLFVEGLT--GAPLNPNQV 122

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A397EZY8_9STRA (tRNA-binding domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EZY8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.280e-33
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGT--DGK--VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VW HE A++LYCEEIDVGEDAPRQIASGL +H  LE++QG LVLV+CNL+   L GF S+GMVL A  T  DG   V  V PPA +VVGERV  +G+   GEP TPAQV
Sbjct:  103 VWKHETADKLYCEEIDVGEDAPRQIASGLVKHYTLEQMQGRLVLVMCNLKARNLVGFKSHGMVLCAVATNADGSESVAFVEPPAGAVVGERVTYDGVTG-GEPWTPAQV 210

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BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A397DSP3_9STRA (tRNA-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DSP3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.740e-33
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 0

Query:    2 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGT--DGK--VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 106
            VW HE A++LYCEEIDVGEDAPRQIASGL +H  LE++QG LVLV+CNL+   L GF S+GMVL A  T  DG   +  V PPA +VVGERV  +GL   GEP TPAQV
Sbjct:  194 VWKHETADKLYCEEIDVGEDAPRQIASGLVKHYTLEQMQGRLVLVMCNLKARNLVGFKSHGMVLCAVATNADGSESIAFVEPPAGAVVGERVTYDGLTG-GEPWTPAQV 301

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRH8_ECTSI	8.430e-42	76.19	Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2...	[more]
B8CA55_THAPS	1.510e-37	64.49	tRNA-binding domain-containing protein (Fragment) ...	[more]
A0A7S1D9R7_CYCTE	1.880e-36	66.67	Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis ...	[more]
A0A812XFC2_SYMMI	1.040e-35	67.74	AIMP1 protein (Fragment) n=1 Tax=Symbiodinium micr...	[more]
A0A7S1H2S0_9STRA	1.140e-35	63.21	Hypothetical protein n=1 Tax=Thalassionema nitzsch...	[more]
A0A1E7FWM2_9STRA	2.670e-35	66.36	Methionine--tRNA ligase n=1 Tax=Fragilariopsis cyl...	[more]
A0A397BX65_9STRA	2.600e-34	63.30	tRNA-binding domain-containing protein (Fragment) ...	[more]
A0A835YVV0_9STRA	1.010e-33	61.26	tRNA-binding domain-containing protein n=1 Tax=Tri...	[more]
A0A397EZY8_9STRA	1.280e-33	63.30	tRNA-binding domain-containing protein n=3 Tax=Aph...	[more]
A0A397DSP3_9STRA	2.740e-33	63.30	tRNA-binding domain-containing protein n=1 Tax=Aph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002547	tRNA-binding domain	PFAM	PF01588	tRNA_bind	coord: 4..87 e-value: 8.3E-23 score: 80.3
IPR002547	tRNA-binding domain	PROSITE	PS50886	TRBD	coord: 1..90 score: 25.112
None	No IPR available	GENE3D	2.40.50.140		coord: 1..107 e-value: 1.2E-34 score: 121.4
None	No IPR available	PANTHER	PTHR11586:SF39	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 1..106
None	No IPR available	PANTHER	PTHR11586	FAMILY NOT NAMED	coord: 1..106
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..98

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig24584	contig	H-paniculata_contig24584:660..1655 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig24584.6669.1	mRNA_H-paniculata_contig24584.6669.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig24584 660..1655 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig24584.6669.1 ID=prot_H-paniculata_contig24584.6669.1|Name=mRNA_H-paniculata_contig24584.6669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
QVWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNL
RPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEP
LTPAQVN

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002547	tRNA-bd_dom
IPR012340	NA-bd_OB-fold