mRNA_H-paniculata_contig24584.6669.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24584.6669.1
Unique NamemRNA_H-paniculata_contig24584.6669.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: D8LRH8_ECTSI (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH8_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 8.430e-42
Identity = 80/105 (76.19%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VW+HE    LYCEEIDVGE  PR IASGLREH   EE+QG LVLVVCNL+PAK AGF SNGMVLAAK  DGKVELVRPP  SVVGER  VEG   EGEPLTPAQV
Sbjct:  689 VWNHESKEHLYCEEIDVGEGEPRAIASGLREHCTPEEMQGRLVLVVCNLKPAKFAGFASNGMVLAAKSADGKVELVRPPEGSVVGERARVEG--SEGEPLTPAQV 791
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: B8CA55_THAPS (tRNA-binding domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA55_THAPS)

HSP 1 Score: 133 bits (335), Expect = 1.510e-37
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDA-PRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGK-VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VW+HE+A++L+CEEIDVGE+  PR+IASGLREH  L+++Q   VLVVCNL+PAK+ GF SNGMVLAAK  DGK VELV PPA + VGERV ++GL   GEP +  QV
Sbjct:   35 VWNHEEADKLFCEEIDVGEEGGPREIASGLREHYSLDDMQDRKVLVVCNLKPAKIVGFTSNGMVLAAKSEDGKSVELVTPPADAAVGERVFIDGLS--GEPFSSTQV 139
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A7S1D9R7_CYCTE (Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9R7_CYCTE)

HSP 1 Score: 139 bits (351), Expect = 1.880e-36
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VWHH+ A+ L+CEEIDVGE  PRQIASGLR+H  LE++ G  VLVVCNL+PA++ GF SNGMVLAAK  DGKVELV PP ++ VGERVA++GL+  G P +PAQV
Sbjct:  495 VWHHQAADNLFCEEIDVGEGDPRQIASGLRQHYTLEDMDGKKVLVVCNLKPARIVGFTSNGMVLAAK-LDGKVELVVPPDSAEVGERVAIKGLD--GNPFSPAQV 596
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A812XFC2_SYMMI (AIMP1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XFC2_SYMMI)

HSP 1 Score: 131 bits (330), Expect = 1.040e-35
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGL 282
            VW+HE+A RL+CEEIDVGED PRQIASGLR+H  LE++    V+VVCNL+ AKL GF SNGMVLAAK  DG+V+LV PP  +VVGERV +EG+
Sbjct:  129 VWNHEKAERLFCEEIDVGEDVPRQIASGLRDHYSLEDMHNRKVIVVCNLKEAKLVGFSSNGMVLAAKCADGQVQLVAPPEDAVVGERVFIEGI 221
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A7S1H2S0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2S0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.140e-35
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDA-PRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VW+HE ANRL+CEEID+GE++ PRQIASGLREH  LE++    VLVVCNL+PAK+ GF+SNGMVLAAK  D KVELV PP  + +GERV + GL+  G+PL+  Q+
Sbjct:   59 VWNHEDANRLFCEEIDIGEESGPRQIASGLREHYTLEQMHDRKVLVVCNLKPAKIVGFLSNGMVLAAKQGD-KVELVEPPKDTSIGERVFISGLD--GDPLSSTQM 161
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A1E7FWM2_9STRA (Methionine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWM2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.670e-35
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDA-PRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGK-VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VW+HE A++L+CEE+DVGE++ PRQIASGLREH  LEE+Q  LVLVVCNL+ AK+ GF SNGMVLAAKG DGK VELV PP  S +GERV ++GL   GEP + +QV
Sbjct:  631 VWNHESADKLFCEEVDVGEESGPRQIASGLREHYSLEEMQDKLVLVVCNLKAAKIVGFSSNGMVLAAKGEDGKKVELVEPPQGSKIGERVFIDGLS--GEPFSSSQV 735
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A397BX65_9STRA (tRNA-binding domain-containing protein (Fragment) n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BX65_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.600e-34
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGT--DGK--VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VW HE A++LYCEEIDVGEDAPRQIASGL +H  LE++QG LVLV+CNL+   L GF S+GMVL A  T  DG   +  V PPA +VVGERV  +GL   GEP TPAQV
Sbjct:   67 VWKHETADKLYCEEIDVGEDAPRQIASGLVKHYTLEQMQGRLVLVMCNLKARNLVGFKSHGMVLCAVATNADGSESIAFVEPPAGAVVGERVTYDGLTG-GEPWTPAQV 174
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A835YVV0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.010e-33
Identity = 68/111 (61.26%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDA------PRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VWHH  + +L+CEEI+ G+        PR +ASGLR H  L E+   LV VVCNL+PAKLAGF SNGMVLAA G  GKVEL+RPPA SVVGER+ VEGL   G PL P QV
Sbjct:   15 VWHHPDSEKLFCEEIECGDGGDGQGAPPRPVASGLRAHHTLAEMDQRLVCVVCNLKPAKLAGFESNGMVLAASG-GGKVELIRPPAGSVVGERLFVEGLT--GAPLNPNQV 122
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A397EZY8_9STRA (tRNA-binding domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EZY8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.280e-33
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGT--DGK--VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VW HE A++LYCEEIDVGEDAPRQIASGL +H  LE++QG LVLV+CNL+   L GF S+GMVL A  T  DG   V  V PPA +VVGERV  +G+   GEP TPAQV
Sbjct:  103 VWKHETADKLYCEEIDVGEDAPRQIASGLVKHYTLEQMQGRLVLVMCNLKARNLVGFKSHGMVLCAVATNADGSESVAFVEPPAGAVVGERVTYDGVTG-GEPWTPAQV 210
[Close]
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Match: A0A397DSP3_9STRA (tRNA-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DSP3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.740e-33
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:    4 VWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNLRPAKLAGFVSNGMVLAAKGT--DGK--VELVRPPAASVVGERVAVEGLEFEGEPLTPAQV 318
            VW HE A++LYCEEIDVGEDAPRQIASGL +H  LE++QG LVLV+CNL+   L GF S+GMVL A  T  DG   +  V PPA +VVGERV  +GL   GEP TPAQV
Sbjct:  194 VWKHETADKLYCEEIDVGEDAPRQIASGLVKHYTLEQMQGRLVLVMCNLKARNLVGFKSHGMVLCAVATNADGSESIAFVEPPAGAVVGERVTYDGLTG-GEPWTPAQV 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24584.6669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH8_ECTSI8.430e-4276.19Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
B8CA55_THAPS1.510e-3764.49tRNA-binding domain-containing protein (Fragment) ... [more]
A0A7S1D9R7_CYCTE1.880e-3666.67Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis ... [more]
A0A812XFC2_SYMMI1.040e-3567.74AIMP1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S1H2S0_9STRA1.140e-3563.21Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A1E7FWM2_9STRA2.670e-3566.36Methionine--tRNA ligase n=1 Tax=Fragilariopsis cyl... [more]
A0A397BX65_9STRA2.600e-3463.30tRNA-binding domain-containing protein (Fragment) ... [more]
A0A835YVV0_9STRA1.010e-3361.26tRNA-binding domain-containing protein n=1 Tax=Tri... [more]
A0A397EZY8_9STRA1.280e-3363.30tRNA-binding domain-containing protein n=3 Tax=Aph... [more]
A0A397DSP3_9STRA2.740e-3363.30tRNA-binding domain-containing protein n=1 Tax=Aph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24584contigH-paniculata_contig24584:660..1655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue5.8e-36
Seed eggNOG ortholog2880.D8LRH8
Preferred nameMSM1
KEGG rclassRC00055,RC00523
KEGG koko:K01874,ko:K15437
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031974,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.methionyl-tRNA aminoacylation
EggNOG OGsCOG0143@1,KOG0436@2759,KOG2241@2759
EC6.1.1.10
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.874087-CDS-H-paniculata_contig24584:659..8781622929713.874087-CDS-H-paniculata_contig24584:659..878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24584 660..878 +
1691480978.9584804-CDS-H-paniculata_contig24584:659..8781691480978.9584804-CDS-H-paniculata_contig24584:659..878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24584 660..878 +
1622929713.8848894-CDS-H-paniculata_contig24584:1553..16551622929713.8848894-CDS-H-paniculata_contig24584:1553..1655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24584 1554..1655 +
1691480978.969691-CDS-H-paniculata_contig24584:1553..16551691480978.969691-CDS-H-paniculata_contig24584:1553..1655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24584 1554..1655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24584.6669.1prot_H-paniculata_contig24584.6669.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24584 660..1655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24584.6669.1

>prot_H-paniculata_contig24584.6669.1 ID=prot_H-paniculata_contig24584.6669.1|Name=mRNA_H-paniculata_contig24584.6669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
QVWHHEQANRLYCEEIDVGEDAPRQIASGLREHVPLEEIQGSLVLVVCNL
RPAKLAGFVSNGMVLAAKGTDGKVELVRPPAASVVGERVAVEGLEFEGEP
LTPAQVN
back to top

mRNA from alignment at H-paniculata_contig24584:660..1655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24584.6669.1 ID=mRNA_H-paniculata_contig24584.6669.1|Name=mRNA_H-paniculata_contig24584.6669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=996bp|location=Sequence derived from alignment at H-paniculata_contig24584:660..1655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCTGGCATCACGAACAAGCAAATCGACTTTATTGCGAGGAGATTGA
CGTGGGGGAAGATGCACCAAGACAAATCGCTAGCGGCCTCAGAGAACATG
TGCCATTGGAAGAAATTCAAGGCAGCCTCGTCCTAGTGGTGTGCAATTTG
AGGCCCGCCAAGCTGGCGGGCTTCGTGTCTAATGGGATGGTCCTGGCTGC
CAAAGGGACGGATGGAAAGGTGTGTTACCAAAAAAAAAAAAAAAAAAAAA
AAAAATAGTGAGGAGGCTGCACCCGGGCAGGCCTTGTTTTGGTCGTTTTA
TGTAGGATTAGCGATCAAGAAGTCATCGCGCGTGAACGATCACGAACAAT
GGCTCGCTGCGCTCACAGTGCCTTGCTACGCTTGCGTGTAAAAAAAAAGG
CTTACTATCTTCGTGAAGATTCTTTGTTAAGGAGTAGTCACTTGAAATGC
GGACTTGAAACGTATGTACTGAATGTTGAAATCGACAATGATGATGACGT
CACAGTATACCATCCGACAAGAATTTCGAGTCTCAATTTTTGTCAAAAAG
CGCCAGAGATTCTGTTCGAGAAATGGGGGCTCAAATTGTACTCTCATAAA
TATTTCCTAAATAGATGTGAGGAACGGTGCTGCCTGTGATTCATTCTCGC
CCGAACAAGACGGTTTTGAGCTTCACCCGAAATCAGAAATTTCTTATCAT
GGGGCTCGTACATGTCCTCTGCACTAGGGTATCTAATGACCAGTACTAAC
CAGTAATGGCGATTTGGATAATTGCAATACTTTTTACAAGAGCTGCAGAT
TCTGGTGCGTGATCTGTTGATCGCTCATACATGGCGCATTTGTGTAAAAA
ATCGATTGAAGTCCTGAATAGCATGATGGCTTTGAACACATCAGGTCGAG
CTGGTGCGACCTCCAGCGGCGTCTGTGGTTGGAGAACGGGTGGCCGTGGA
GGGCTTGGAATTCGAAGGGGAACCCTTGACACCGGCGCAGGTGAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig24584:660..1655+

>mRNA_H-paniculata_contig24584.6669.1 ID=mRNA_H-paniculata_contig24584.6669.1|Name=mRNA_H-paniculata_contig24584.6669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig24584:660..1655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCTGGCATCACGAACAAGCAAATCGACTTTATTGCGAGGAGATTGA
CGTGGGGGAAGATGCACCAAGACAAATCGCTAGCGGCCTCAGAGAACATG
TGCCATTGGAAGAAATTCAAGGCAGCCTCGTCCTAGTGGTGTGCAATTTG
AGGCCCGCCAAGCTGGCGGGCTTCGTGTCTAATGGGATGGTCCTGGCTGC
CAAAGGGACGGATGGAAAGCAGGTCTGGCATCACGAACAAGCAAATCGAC
TTTATTGCGAGGAGATTGACGTGGGGGAAGATGCACCAAGACAAATCGCT
AGCGGCCTCAGAGAACATGTGCCATTGGAAGAAATTCAAGGCAGCCTCGT
CCTAGTGGTGTGCAATTTGAGGCCCGCCAAGCTGGCGGGCTTCGTGTCTA
ATGGGATGGTCCTGGCTGCCAAAGGGACGGATGGAAAGGTCGAGCTGGTG
CGACCTCCAGCGGCGTCTGTGGTTGGAGAACGGGTGGCCGTGGAGGGCTT
GGAATTCGAAGGGGAACCCTTGACACCGGCGCAGGTGAACGTCGAGCTGG
TGCGACCTCCAGCGGCGTCTGTGGTTGGAGAACGGGTGGCCGTGGAGGGC
TTGGAATTCGAAGGGGAACCCTTGACACCGGCGCAGGTGAAC
back to top