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Homology
BLAST of mRNA_H-paniculata_contig2458.6668.1 vs. uniprot
Match: D7FQJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ1_ECTSI) HSP 1 Score: 149 bits (376), Expect = 6.970e-43 Identity = 70/101 (69.31%), Postives = 86/101 (85.15%), Query Frame = 1
Query: 364 MPDLTDRLRKAHSA--TNQKVVRGVRRSNILLGDARIKTLTTTQHDSMDEIVEATSKMEPGFNARTRQDPRYSTIKLGDAVGRFIWTTSNTMPNWYAPETY 660
MPDL R+R+A+S+ N++++ +RRSN+ LGD RIKTLTT+QHDSMDEIVEATSKMEPGFNART+QDPR+S+I+LGD +WTTSN MPNWYAPETY
Sbjct: 1 MPDLRSRMREANSSPEANRELMLRIRRSNVQLGDGRIKTLTTSQHDSMDEIVEATSKMEPGFNARTKQDPRFSSIELGDPAAENLWTTSNRMPNWYAPETY 101
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 660 |
| Cds size | 660 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2458.6668.1 >prot_H-paniculata_contig2458.6668.1 ID=prot_H-paniculata_contig2458.6668.1|Name=mRNA_H-paniculata_contig2458.6668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MFAVNWTALQTVQVVLGEDNPEWGSSNAMPAPTGELSRYRGALSKETARF
IKTSSVKMGSLHPGSQYKTSMARDGLPTPDHEASVEIFKSNREIHDKQRS
ARSTGIFSDGMENTYYESSNAMPDLTDRLRKAHSATNQKVVRGVRRSNIL
LGDARIKTLTTTQHDSMDEIVEATSKMEPGFNARTRQDPRYSTIKLGDAV
GRFIWTTSNTMPNWYAPETY back to topmRNA from alignment at H-paniculata_contig2458:18748..20951- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2458.6668.1 ID=mRNA_H-paniculata_contig2458.6668.1|Name=mRNA_H-paniculata_contig2458.6668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2204bp|location=Sequence derived from alignment at H-paniculata_contig2458:18748..20951- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGCCGTCAACTGGACAGCGTTGCAAACGGTCCAGGTCGTGCTAGG
GGAGGATAATCCCGAGTGGGGGTCGTCCAACGCCATGCCGGCGCCAACGG
GCGAGCTCTCTCGGTATAGAGGGGCATTGAGCAAAGAGACAGCAAGGTTC
ATCAAGACCTCTAGGTTAGCGATTAATCCTGAGATATTGAAGGGCTACAT
GACATTGTGTTCATCAGCATCTTTGGGCACCGTAGACACGATCGTATCCG
CTAAAAGGGAGTAAAGCAATGGGCAGACACGTTATTGTCCTGCGAGCGGA
CACCCTTGCTATCTATAGCATTTTCCCTCGCCGAAATACGACATCATCCT
TCGAATAACGCCTTTTGTGTCTCGCCGGCTAAATTTCCTTTGTGTGCAGC
GTTAAGATGGGTTCATTGCATCCGGGATCCCAATACAAGACATCGATGGC
ACGAGACGGCTTACCGACTCCCGACCACGAAGCTTCTGTCGAGATCTTTA
AGAGCAACCGAGAAATACACGACAAACAGCGAAGTGGTGAGAATATTGAC
TAAAGCTGATAGGGATATCAATATTCGTGTGAGGCAGAGACAAGGCGGTA
CATGATGCTGGCGGCGCAATATGGTTGTTGGCTTATCTGGACAAAGAGGA
GAGAGTTGTCGCAGTCCAGGCGAACTCGCGGTATTTGTAGGTCTACATCG
AGAACGAAACAGAATCCATCGGAACGAGATGCAGCCATGCCCTCTCATGG
GCCAACACCGTGAATAACCTGCAGTACTTGCGGTATCATTGACCGTCAGG
CCACACACGCAATGCGTAGTCCTACACCGGTGCGCCATTTTTTTCCTTTC
GTGAGCATAAATCGCGATAAGATGTAGGAACAGGGCAAAGGCATAAACAA
GGGAACGACGACCTGCTCCAAGTGCTTCGATCGGACCTCCACAGTGATAT
TGGGGCTATTTTCCATCTCTGTATGCCCCATTCAGCGAGATCAACGGGGA
TATTTTCCGATGGAATGGAGAACACCTACTACGAGAGCAGCAACGCGATG
CCCGACCTCACGGATAGACTGCGCAAAGCTCATTCTGCGACCAATCAGAA
GGTTGTGCGGGGAGTCCGAAGATCTAATATTTTGCTCGGGGATGCCCGAA
TCAAGGTGATTGTAGGGCAGACGAAACGCGATTTGCTCTGGCCAACATGT
GCGTGATAATCACACATGCCTTTTACCTCGGGGCTCGATGATCATGTTAT
CCATGCTACGCGAGTTGTTTGCGTGTCTTGTGTTCATGTTCGTGATTCCT
ACACGTCACTCTTGTATTGGTTCGTGTCAAGCCTGAGATATCGAACCTGC
TTCGTTCGTTGTGTCTTATGTGCTGCCCCAGCAGGAGTCAACTTGCACGG
AAGGAAATACCGTTGTATACAGCTGGTCGTATTAGTTATGAGTCATTCTC
TATTTTTGATCTGCCGACACCAAATTTGCCCATGTACAGACGTTGACGAC
AACGCAACACGATTCGATGGACGAGATAGTCGAGGCAACGAGCAAAATGG
AGCCGGGCTTTAACGCCAGGACTAGACAAGATCCTCGCTATTCAACAATT
AAGCTTGGAGATGGTGCCGCATTTCAGGCAAAGCGCAGCTAATATAGTTA
TCGCCCCCCTCCCACCTTCACAGTTACGATCCATGTACTTCACTTGTGAC
GAGTTCAAGGCGTTCGACTGAAGAGAGTACTGCAAACAACCATAGCTCCC
AGACATGACGCAGTACTTGATAGTTTTGCAGTCTTTATGTTGTGTTACTT
CAGACATCCCATAAAAGAAGGTGTCGAGTACACGGGCAATATATGTGTCA
TAAACGCGACATAACAGTCTCCGCGACAGGAACGAAAGCAAAAATATTCT
CAGAAAAAGGATATTTTTTTAATAGCATTGCTTTCCTGTCTCCTTCGCGA
AAACTAGCTGTTGGAAGATTCATTGTTGAGTGTGTTAGTATCAAACGTTT
GATCAAATAAAAAATATCGCGTGAGCCGTACGTCTACCACCCCATTGACG
TGCTTCGACTTTCTGCAAACTCACAAATAAAATGTTCCTAGCCCCCGTCC
CCCCTGCCCCGAATGGCCCACGCCTCGTCATGTATTCGGATTTATTTTTC
CCGCAGTGGACGACATCGAATACGATGCCAAACTGGTACGCTCCAGAAAC
ATAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig2458:18748..20951- >mRNA_H-paniculata_contig2458.6668.1 ID=mRNA_H-paniculata_contig2458.6668.1|Name=mRNA_H-paniculata_contig2458.6668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig2458:18748..20951- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGCCGTCAACTGGACAGCGTTGCAAACGGTCCAGGTCGTGCTAGG
GGAGGATAATCCCGAGTGGGGGTCGTCCAACGCCATGCCGGCGCCAACGG
GCGAGCTCTCTCGGTATAGAGGGGCATTGAGCAAAGAGACAGCAAGGTTC
ATCAAGACCTCTAGATGTTTGCCGTCAACTGGACAGCGTTGCAAACGGTC
CAGGTCGTGCTAGGGGAGGATAATCCCGAGTGGGGGTCGTCCAACGCCAT
GCCGGCGCCAACGGGCGAGCTCTCTCGGTATAGAGGGGCATTGAGCAAAG
AGACAGCAAGGTTCATCAAGACCTCTAGCGTTAAGATGGGTTCATTGCAT
CCGGGATCCCAATACAAGACATCGATGGCACGAGACGGCTTACCGACTCC
CGACCACGAAGCTTCTGTCGAGATCTTTAAGAGCAACCGAGAAATACACG
ACAAACAGCGAAGTGCGTTAAGATGGGTTCATTGCATCCGGGATCCCAAT
ACAAGACATCGATGGCACGAGACGGCTTACCGACTCCCGACCACGAAGCT
TCTGTCGAGATCTTTAAGAGCAACCGAGAAATACACGACAAACAGCGAAG
TGCGAGATCAACGGGGATATTTTCCGATGGAATGGAGAACACCTACTACG
AGAGCAGCAACGCGATGCCCGACCTCACGGATAGACTGCGCAAAGCTCAT
TCTGCGACCAATCAGAAGGTTGTGCGGGGAGTCCGAAGATCTAATATTTT
GCTCGGGGATGCCCGAATCAAGCGAGATCAACGGGGATATTTTCCGATGG
AATGGAGAACACCTACTACGAGAGCAGCAACGCGATGCCCGACCTCACGG
ATAGACTGCGCAAAGCTCATTCTGCGACCAATCAGAAGGTTGTGCGGGGA
GTCCGAAGATCTAATATTTTGCTCGGGGATGCCCGAATCAAGACGTTGAC
GACAACGCAACACGATTCGATGGACGAGATAGTCGAGGCAACGAGCAAAA
TGGAGCCGGGCTTTAACGCCAGGACTAGACAAGATCCTCGCTATTCAACA
ATTAAGCTTGGAGATGACGTTGACGACAACGCAACACGATTCGATGGACG
AGATAGTCGAGGCAACGAGCAAAATGGAGCCGGGCTTTAACGCCAGGACT
AGACAAGATCCTCGCTATTCAACAATTAAGCTTGGAGATGCTGTTGGAAG
ATTCATTCTGTTGGAAGATTCATTTGGACGACATCGAATACGATGCCAAA
CTGGTACGCTCCAGAAACATACTGGACGACATCGAATACGATGCCAAACT
GGTACGCTCCAGAAACATAC back to top
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