prot_H-paniculata_contig2458.6667.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2458.6667.1
Unique Nameprot_H-paniculata_contig2458.6667.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length328
Homology
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BLAST of mRNA_H-paniculata_contig2458.6667.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 1.450e-66
Identity = 115/170 (67.65%), Postives = 136/170 (80.00%), Query Frame = 0 
Query:    1 MIKKTDELIVVDTLLEEGLNDGDLPHLCLDKTLLINSGHSTLGPDELEDVLNSVRKSKRKLNKLSVMFNGTQAHGIGRFLASDRSVRELTILCENISQESIQSISEALKSNDRVVKVFLGGRELRREAAVALGGMLEVTPS-LQQLTLFNCGIGDDGSRHLAIGLAANKT 169
            +IKK  ELIVVDTLLEEGLNDGDLPHLCLDKTLL+ SGH TLGP +LEDVL SVR++KRKLNKLSVMFNGT   GIG F+A D SVRE+T+LCE++S +SIQS++EAL++N  V K+ LGG+EL+  AA AL  +L+   S LQQLTLFNCG  D G+  LA GLA N T
Sbjct:   22 VIKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKELQEGAAAALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLARNNT 191
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BLAST of mRNA_H-paniculata_contig2458.6667.1 vs. uniprot
Match: A0A835YRN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRN5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.300e-12
Identity = 56/199 (28.14%), Postives = 89/199 (44.72%), Query Frame = 0 
Query:    9 IVVDTLLEEGLNDGDLPHLCLDKTLLINSGHSTLGPDELEDVLNSVRKSKRK---------------------LNKLSVMFNGTQAHGIGRFLASDRSVRELTILCENISQESIQSISEALKSND----------------------------RVVKVFLGGRELRR-EAAVALGGMLEVTPSLQQLTLFNCGIGDDGS 157
            ++ D L E+G  DGDLPHL LD+TL+   GH+ L PD LE +L   ++ +                       + KL++ FN ++A G+G ++A++R + EL++LCE                 D                            RV    L   E+   + A+ LG M+ ++ SL++L LF C +GDDG+
Sbjct:   36 LIQDCLQEDGAADGDLPHLYLDRTLIARQGHAALTPDALEQLLLYAQRRRTPGHAALXXXXXXXXXXXXXXXPVKKLTLEFNHSEALGLGDYVAANRDLEELSVLCEXXXXXXXXXXXXCETMTDGTLEEXXXXXXXXXXXXXXXXXXXXXVSRVTTFRLVAPEITGPKPALQLGAMVAMSQSLRELVLFGCRLGDDGA 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2458.6667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQJ2_ECTSI1.450e-6667.65Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YRN5_9STRA1.300e-1228.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 139..166
e-value: 0.062
score: 22.4
coord: 195..222
e-value: 4.3
score: 12.7
coord: 167..194
e-value: 0.69
score: 18.3
coord: 223..250
e-value: 11.0
score: 9.9
coord: 251..278
e-value: 0.0022
score: 27.2
coord: 83..110
e-value: 93.0
score: 3.2
NoneNo IPR availablePANTHERPTHR24113:SF5RAN GTPASE-ACTIVATING PROTEINcoord: 45..248
coord: 212..308
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 45..248
coord: 212..308
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 39..304
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 35..207
e-value: 4.9E-25
score: 89.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 208..318
e-value: 4.6E-24
score: 86.9
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 140..156
e-value: 1.7
score: 8.9
coord: 167..189
e-value: 5.6E-4
score: 19.7
coord: 251..273
e-value: 2.8E-4
score: 20.7
coord: 223..244
e-value: 0.35
score: 11.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2458contigH-paniculata_contig2458:12870..18028 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2458.6667.1mRNA_H-paniculata_contig2458.6667.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2458 12819..18912 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2458.6667.1 ID=prot_H-paniculata_contig2458.6667.1|Name=mRNA_H-paniculata_contig2458.6667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp
MIKKTDELIVVDTLLEEGLNDGDLPHLCLDKTLLINSGHSTLGPDELEDV
LNSVRKSKRKLNKLSVMFNGTQAHGIGRFLASDRSVRELTILCENISQES
IQSISEALKSNDRVVKVFLGGRELRREAAVALGGMLEVTPSLQQLTLFNC
GIGDDGSRHLAIGLAANKTLQFLDLTYCRIMDEGAVAIARAVQEHSFLSH
LNLKSNIVRVRGASALAQVLRNNIVVQELMLGGNKIRDAGAETLGGAVAV
NTTLVCLDLGANEITDKGGLAIAEGLAHNASLRNINLRRNRIGSEMCERI
RAGWNKRNAKESMRRDQPWHDGLSLPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt