mRNA_H-paniculata_contig2458.6667.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2458.6667.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI) HSP 1 Score: 225 bits (574), Expect = 9.980e-66 Identity = 122/187 (65.24%), Postives = 147/187 (78.61%), Query Frame = 1
Query: 1 SSTASSKSSGEPPPASIMIKKTDELIVVDTLLEEGLNDGDLPHLCLDKTLLINSGHSTLGPDELEDVLNSVRKSKRKLNKLSVMFNGTQAHGIGRFLASDRSVRELTILCENISQESIQSISEALKSNDRVVKVFLGGRELRREAAVALGGMLEVTPS-LQQLTLFNCGIGDDGSRHLAIGLAANKT 558
SS+A ++ GE PP ++IKK ELIVVDTLLEEGLNDGDLPHLCLDKTLL+ SGH TLGP +LEDVL SVR++KRKLNKLSVMFNGT GIG F+A D SVRE+T+LCE++S +SIQS++EAL++N V K+ LGG+EL+ AA AL +L+ S LQQLTLFNCG D G+ LA GLA N T
Sbjct: 6 SSSARPRNVGEAPPG-VVIKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKELQEGAAAALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLARNNT 191
BLAST of mRNA_H-paniculata_contig2458.6667.1 vs. uniprot
Match: A0A835YRN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRN5_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.740e-12 Identity = 56/199 (28.14%), Postives = 89/199 (44.72%), Query Frame = 1
Query: 76 IVVDTLLEEGLNDGDLPHLCLDKTLLINSGHSTLGPDELEDVLNSVRKSKRK---------------------LNKLSVMFNGTQAHGIGRFLASDRSVRELTILCENISQESIQSISEALKSND----------------------------RVVKVFLGGRELRR-EAAVALGGMLEVTPSLQQLTLFNCGIGDDGS 522
++ D L E+G DGDLPHL LD+TL+ GH+ L PD LE +L ++ + + KL++ FN ++A G+G ++A++R + EL++LCE D RV L E+ + A+ LG M+ ++ SL++L LF C +GDDG+
Sbjct: 36 LIQDCLQEDGAADGDLPHLYLDRTLIARQGHAALTPDALEQLLLYAQRRRTPGHAALXXXXXXXXXXXXXXXPVKKLTLEFNHSEALGLGDYVAANRDLEELSVLCEXXXXXXXXXXXXCETMTDGTLEEXXXXXXXXXXXXXXXXXXXXXVSRVTTFRLVAPEITGPKPALQLGAMVAMSQSLRELVLFGCRLGDDGA 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2458.6667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2458.6667.1 >prot_H-paniculata_contig2458.6667.1 ID=prot_H-paniculata_contig2458.6667.1|Name=mRNA_H-paniculata_contig2458.6667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp MIKKTDELIVVDTLLEEGLNDGDLPHLCLDKTLLINSGHSTLGPDELEDVback to top mRNA from alignment at H-paniculata_contig2458:12819..18912+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2458.6667.1 ID=mRNA_H-paniculata_contig2458.6667.1|Name=mRNA_H-paniculata_contig2458.6667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6094bp|location=Sequence derived from alignment at H-paniculata_contig2458:12819..18912+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2458:12819..18912+ >mRNA_H-paniculata_contig2458.6667.1 ID=mRNA_H-paniculata_contig2458.6667.1|Name=mRNA_H-paniculata_contig2458.6667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at H-paniculata_contig2458:12819..18912+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |