mRNA_H-paniculata_contig24572.6664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24572.6664.1
Unique NamemRNA_H-paniculata_contig24572.6664.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24572.6664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24572contigH-paniculata_contig24572:136..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.386367-CDS-H-paniculata_contig24572:135..5491622929713.386367-CDS-H-paniculata_contig24572:135..549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24572 136..549 -
1691480978.6094825-CDS-H-paniculata_contig24572:135..5491691480978.6094825-CDS-H-paniculata_contig24572:135..549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24572 136..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24572.6664.1prot_H-paniculata_contig24572.6664.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24572 136..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24572.6664.1

>prot_H-paniculata_contig24572.6664.1 ID=prot_H-paniculata_contig24572.6664.1|Name=mRNA_H-paniculata_contig24572.6664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
ANPERVQNAHKAWITLITTCKGMALKIVQSTESPSEAWRKLQKHYRASGL
NEKSRLLREFNSLRMEPGEESTKFLLRVDRVSNDLERLGRTVDEDDRNLA
IMNGLSPEYEIETRMIESSDDTPNRARIETIIANQNNR
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mRNA from alignment at H-paniculata_contig24572:136..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24572.6664.1 ID=mRNA_H-paniculata_contig24572.6664.1|Name=mRNA_H-paniculata_contig24572.6664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at H-paniculata_contig24572:136..549- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAATCCCGAGAGGGTGCAGAACGCGCACAAAGCGTGGATCACGCTAAT
CACGACCTGCAAAGGTATGGCGTTGAAGATCGTCCAGAGCACCGAGTCGC
CGAGTGAGGCGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGCCTC
AACGAGAAGTCACGTCTGTTGCGCGAATTTAACTCCCTCAGGATGGAGCC
CGGGGAAGAGTCCACAAAATTCCTTTTGCGGGTGGACCGGGTCAGCAATG
ACTTGGAGCGGCTTGGGAGGACTGTCGACGAAGATGACAGGAATCTGGCG
ATAATGAACGGGCTATCACCAGAGTATGAGATTGAGACGAGAATGATCGA
GAGCAGCGATGACACGCCAAATAGAGCGCGCATCGAAACGATCATCGCAA
ACCAGAATAACAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24572:136..549-

>mRNA_H-paniculata_contig24572.6664.1 ID=mRNA_H-paniculata_contig24572.6664.1|Name=mRNA_H-paniculata_contig24572.6664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig24572:136..549- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAATCCCGAGAGGGTGCAGAACGCGCACAAAGCGTGGATCACGCTAAT
CACGACCTGCAAAGGTATGGCGTTGAAGATCGTCCAGAGCACCGAGTCGC
CGAGTGAGGCGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGCCTC
AACGAGAAGTCACGTCTGTTGCGCGAATTTAACTCCCTCAGGATGGAGCC
CGGGGAAGAGTCCACAAAATTCCTTTTGCGGGTGGACCGGGTCAGCAATG
ACTTGGAGCGGCTTGGGAGGACTGTCGACGAAGATGACAGGAATCTGGCG
ATAATGAACGGGCTATCACCAGAGTATGAGATTGAGACGAGAATGATCGA
GAGCAGCGATGACACGCCAAATAGAGCGCGCATCGAAACGATCATCGCAA
ACCAGAATAACAGAGCAAATCCCGAGAGGGTGCAGAACGCGCACAAAGCG
TGGATCACGCTAATCACGACCTGCAAAGGTATGGCGTTGAAGATCGTCCA
GAGCACCGAGTCGCCGAGTGAGGCGTGGAGGAAGCTCCAAAAGCACTACC
GCGCTAGCGGCCTCAACGAGAAGTCACGTCTGTTGCGCGAATTTAACTCC
CTCAGGATGGAGCCCGGGGAAGAGTCCACAAAATTCCTTTTGCGGGTGGA
CCGGGTCAGCAATGACTTGGAGCGGCTTGGGAGGACTGTCGACGAAGATG
ACAGGAATCTGGCGATAATGAACGGGCTATCACCAGAGTATGAGATTGAG
ACGAGAATGATCGAGAGCAGCGATGACACGCCAAATAGAGCGCGCATCGA
AACGATCATCGCAAACCAGAATAACAGA
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