mRNA_H-paniculata_contig24570.6663.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24570.6663.1
Unique NamemRNA_H-paniculata_contig24570.6663.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24570.6663.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.430e-13
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:   16 KYLQVEAYDFHQYPTIELTWRQLSGECGAEVAPADRAEWTGTYDTLSLNDEEPDLSGRVQLDLWVCAPFGEYELEMVVMSFTDDDA 273
            +YLQ+E +D++  P +++TWRQL+ ECG  V   D    T TYD  S+ D +     R+Q+D+++CAP+G YELE+V  S    +A
Sbjct:   48 RYLQIEGFDYNSSPWMQMTWRQLTDECGNAVT--DGFSETVTYDGDSIEDGD-----RLQMDMYICAPWGNYELELVSKSTNGGNA 126
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BLAST of mRNA_H-paniculata_contig24570.6663.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.550e-13
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:   16 KYLQVEAYDFHQYPTIELTWRQLSGECGAEVAPADRAEWTGTYDTLSLNDEEPDLSGRVQLDLWVCAPFGEYELEMVVMSFTDDDA 273
            +YLQ+E +D++  P +++TWRQL+ ECG  V   D    T TYD  S+ D +     R+Q+D+++CAP+G YELE+V  S    +A
Sbjct:   48 RYLQIEGFDYNSSPWMQMTWRQLTDECGNAVT--DGFSETVTYDGDSIEDGD-----RLQMDMYICAPWGNYELELVSKSTNGGNA 126
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BLAST of mRNA_H-paniculata_contig24570.6663.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.460e-12
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 DPSTQK--YLQVEAYDFHQYPTIELTWRQLSGECGAEVAPADRAEWTGTYDTLSLNDEEPDLSGRVQLDLWVCAPFGEYELEMVVMSFTD 264
            D  T+K  YLQ+E +D+++ P +E+TWRQL+ ECG  ++  D  E    Y      D +   + + Q+D++VCAP+G YELE+V  S  D
Sbjct:   18 DSETKKTRYLQIEIFDYNKTPWLEITWRQLTDECGNAIS--DGFEGKAHY-----KDGDRQDTSKFQIDMYVCAPWGHYELEVVSKSTND 100
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BLAST of mRNA_H-paniculata_contig24570.6663.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.260e-11
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 DPSTQK--YLQVEAYDFHQYPTIELTWRQLSGECGAEVAPADRAEWTGTYDTLSLNDEEPDLSGRVQLDLWVCAPFGEYELEMVVMS 255
            D  T+K  YLQ+E +D+++ P +E+TWRQL+ ECG  ++  D  E    Y      D +   + + Q+D++VCAP+G YELE+V  S
Sbjct:   48 DSETKKTRYLQIEIFDYNKTPWLEITWRQLTDECGNAIS--DGFEGKAHY-----KDGDRQDTSKFQIDMYVCAPWGHYELEVVSKS 127
[Close]
BLAST of mRNA_H-paniculata_contig24570.6663.1 vs. uniprot
Match: A0A6H5K384_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 3.800e-5
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:   67 LTWRQLSGECGAEVAPADRAEWTGTYDTLSLNDEEPDLSGRVQLDLWVCAPFGEYELEMVVMSFTDDDA 273
            L  RQL+ ECG  V   D    T TYD  S+ D +     R+Q+D+++CAP+G YELE+V  S    +A
Sbjct:    5 LKHRQLTDECGNAVT--DGFSETVTYDGDSIEDGD-----RLQMDMYICAPWGNYELELVSKSTNGGNA 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24570.6663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K6V8_9PHAE1.430e-1341.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K566_9PHAE1.550e-1341.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ76_9PHAE6.460e-1240.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV1_ECTSI2.260e-1140.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K384_9PHAE3.800e-542.03WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24570contigH-paniculata_contig24570:1063..2120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.337281-CDS-H-paniculata_contig24570:1062..11391622929713.337281-CDS-H-paniculata_contig24570:1062..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24570 1063..1139 +
1691480978.591316-CDS-H-paniculata_contig24570:1062..11391691480978.591316-CDS-H-paniculata_contig24570:1062..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24570 1063..1139 +
1622929713.3500848-CDS-H-paniculata_contig24570:1922..21181622929713.3500848-CDS-H-paniculata_contig24570:1922..2118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24570 1923..2118 +
1691480978.60144-CDS-H-paniculata_contig24570:1922..21181691480978.60144-CDS-H-paniculata_contig24570:1922..2118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24570 1923..2118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24570.6663.1prot_H-paniculata_contig24570.6663.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24570 1063..2118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24570.6663.1

>prot_H-paniculata_contig24570.6663.1 ID=prot_H-paniculata_contig24570.6663.1|Name=mRNA_H-paniculata_contig24570.6663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
DPSTQKYLQVEAYDFHQYPTIELTWRQLSGECGAEVAPADRAEWTGTYDT
LSLNDEEPDLSGRVQLDLWVCAPFGEYELEMVVMSFTDDDA
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mRNA from alignment at H-paniculata_contig24570:1063..2120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24570.6663.1 ID=mRNA_H-paniculata_contig24570.6663.1|Name=mRNA_H-paniculata_contig24570.6663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-paniculata_contig24570:1063..2120+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCCTTCCACGCAGAAGTACCTTCAGGTCGAGGCCTACGACTTCCACCA
ATATCCGACTATCGAGTTGACGTGGAGGTCAGTTCTGGTTTATGGGTATA
CAACTCGTACACACCGGGTAGATCATCTCGGTGATGAAAAAACAGTGCGC
GTACAGCTCCGATTTTCTCTATTTGAGACAATTCATACGTGCGTGTGATA
TGTATAAAGATGGAAATGCACGTTTCCTTGGTAGTTATTTATTGTTTCTT
GTTCAAACGACATCTCGATTGGCGCCTGCTCACTTGCCATTCTAGACTCA
GACAGGGTCGTCCTTCTTGGGATGTCAAGTGTGAAAAAAGGTCATGTATT
ACCACCGAGATAGCATCAAGGATGATGTTGGATGGCACACGTCTGACTGA
CATGAGCGTGTATTGTGCGGCTTCTCTTTCTTGTTCTGATCATTTTTGCC
CCGAAAGTTCGAACCTTGGATGACGTACGAAATACTTGTTCGTCATCAAA
ATTATGCGATGACAGACAGCATCTCAAGGTAATAATTCATTCGCATATAG
AGCTTGAGTTGTGTCCCGCAAATTTGTATGTCTAAAAGCGGGACCGGGCC
TTATCGCGGTAAGTGTTTGAAATGGGGACCTTCACGGTGTATGATTGCCT
TGAAAGATGCACCGAGATATTTTTCTATTTCGATCGATGCGGTACAGTAC
GGATACGACACTGTTATGCTTGTAGTAGCTTTTGACGTGAACACGACCGT
ATTCACTATTGTACTACCCTGTAATGAAGCGACGTGCATTATGTGGCTAA
GACCGCCATGCCATAAAATACCCGATCCGTGACACTTTACACAAAACGAC
TGACCGCCAGGCAACTCAGCGGCGAGTGCGGAGCAGAGGTTGCACCTGCG
GACCGTGCAGAGTGGACCGGAACTTACGACACTCTCTCGCTCAATGACGA
GGAACCTGACCTGTCGGGCAGGGTGCAGCTGGACCTGTGGGTATGCGCTC
CGTTCGGCGAATATGAGCTGGAGATGGTGGTTATGAGCTTCACAGACGAT
GATGCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig24570:1063..2120+

>mRNA_H-paniculata_contig24570.6663.1 ID=mRNA_H-paniculata_contig24570.6663.1|Name=mRNA_H-paniculata_contig24570.6663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig24570:1063..2120+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCCTTCCACGCAGAAGTACCTTCAGGTCGAGGCCTACGACTTCCACCA
ATATCCGACTATCGAGTTGACGTGGAGGATCCTTCCACGCAGAAGTACCT
TCAGGTCGAGGCCTACGACTTCCACCAATATCCGACTATCGAGTTGACGT
GGAGGCAACTCAGCGGCGAGTGCGGAGCAGAGGTTGCACCTGCGGACCGT
GCAGAGTGGACCGGAACTTACGACACTCTCTCGCTCAATGACGAGGAACC
TGACCTGTCGGGCAGGGTGCAGCTGGACCTGTGGGTATGCGCTCCGTTCG
GCGAATATGAGCTGGAGATGGTGGTTATGAGCTTCACAGACGATGATGCG
GCAACTCAGCGGCGAGTGCGGAGCAGAGGTTGCACCTGCGGACCGTGCAG
AGTGGACCGGAACTTACGACACTCTCTCGCTCAATGACGAGGAACCTGAC
CTGTCGGGCAGGGTGCAGCTGGACCTGTGGGTATGCGCTCCGTTCGGCGA
ATATGAGCTGGAGATGGTGGTTATGAGCTTCACAGACGATGATGCG
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