mRNA_H-paniculata_contig2457.6662.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2457.6662.1
Unique NamemRNA_H-paniculata_contig2457.6662.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2457.6662.1 vs. uniprot
Match: A0A6H5K0L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L0_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 6.840e-62
Identity = 110/228 (48.25%), Postives = 150/228 (65.79%), Query Frame = 1 
Query:    1 CPSCWEFPEGWAPNDFAFLGPFTDSALQASSPSDSRATARPDSSEGSIASVPAVGRRSRDDVENASVSASTWPGGVLDGGISMTVGPKQIRVKRKGSG-----ATGQTMGIKADRREKPEFHTDLTTTTSVALYRSVVACIIRIFVKVIPCGTATLLSMDSTWPVSYLYDLWRANSVEG------NAEDAFMFLPTMSGQWSLDNQNIPETETSLGVHTGSLPLSRFD 651
            CP CW+FPEG+ P+DFA+LGPF DS+  AS P+  R++       GS++S+P VG ++       + +A+      ++ G + +  P   RV     G      T +  G  ++ +EKPE HTDLTT+ ++ LYRS+V   IRIFVKVIPCGTAT L MDS+WPVSYL+DLWRAN+ EG         DAFM LPT+ G W+LDN+N+PET+T+LGVHTG+LPLS ++
Sbjct:   62 CPCCWDFPEGYVPHDFAYLGPFEDSS--ASRPTSRRSSRSTVDGRGSVSSLPPVGDKTGSTPRTPAAAAAADR---VETGAAASGSPPGRRVSLLMKGMHGVITTDKGEGADSEEKEKPELHTDLTTSAAITLYRSIVGSTIRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCTCVFMGGIDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYN 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2457.6662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0L0_9PHAE6.840e-6248.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2457contigH-paniculata_contig2457:12634..18266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size653
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2457.6662.1prot_H-paniculata_contig2457.6662.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2457 12634..18266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.2484887-CDS-H-paniculata_contig2457:12633..127521622929713.2484887-CDS-H-paniculata_contig2457:12633..12752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 12634..12752 +
1691480978.539827-CDS-H-paniculata_contig2457:12633..127521691480978.539827-CDS-H-paniculata_contig2457:12633..12752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 12634..12752 +
1622929713.2589188-CDS-H-paniculata_contig2457:14353..145551622929713.2589188-CDS-H-paniculata_contig2457:14353..14555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 14354..14555 +
1691480978.5503583-CDS-H-paniculata_contig2457:14353..145551691480978.5503583-CDS-H-paniculata_contig2457:14353..14555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 14354..14555 +
1622929713.2700958-CDS-H-paniculata_contig2457:15858..159631622929713.2700958-CDS-H-paniculata_contig2457:15858..15963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 15859..15963 +
1691480978.5602899-CDS-H-paniculata_contig2457:15858..159631691480978.5602899-CDS-H-paniculata_contig2457:15858..15963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 15859..15963 +
1622929713.2835069-CDS-H-paniculata_contig2457:17263..173641622929713.2835069-CDS-H-paniculata_contig2457:17263..17364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 17264..17364 +
1691480978.5698512-CDS-H-paniculata_contig2457:17263..173641691480978.5698512-CDS-H-paniculata_contig2457:17263..17364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 17264..17364 +
1622929713.2938223-CDS-H-paniculata_contig2457:18142..182661622929713.2938223-CDS-H-paniculata_contig2457:18142..18266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 18143..18266 +
1691480978.579846-CDS-H-paniculata_contig2457:18142..182661691480978.579846-CDS-H-paniculata_contig2457:18142..18266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 18143..18266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2457.6662.1

>prot_H-paniculata_contig2457.6662.1 ID=prot_H-paniculata_contig2457.6662.1|Name=mRNA_H-paniculata_contig2457.6662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
CPSCWEFPEGWAPNDFAFLGPFTDSALQASSPSDSRATARPDSSEGSIAS
VPAVGRRSRDDVENASVSASTWPGGVLDGGISMTVGPKQIRVKRKGSGAT
GQTMGIKADRREKPEFHTDLTTTTSVALYRSVVACIIRIFVKVIPCGTAT
LLSMDSTWPVSYLYDLWRANSVEGNAEDAFMFLPTMSGQWSLDNQNIPET
ETSLGVHTGSLPLSRFD
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mRNA from alignment at H-paniculata_contig2457:12634..18266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2457.6662.1 ID=mRNA_H-paniculata_contig2457.6662.1|Name=mRNA_H-paniculata_contig2457.6662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5633bp|location=Sequence derived from alignment at H-paniculata_contig2457:12634..18266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCCATCGTGCTGGGAGTTTCCTGAGGGGTGGGCGCCGAACGACTTCGC
TTTCCTCGGCCCTTTCACAGATAGCGCGCTCCAGGCTTCCTCACCAAGCG
ATTCTCGAGCGACCGCCAGGTAATATACCACACCATCTCTATTATTGCAC
ACTCCCTACTACTTATCACGATATATAGGTAGTCATGGCCTTATGATCGT
TTCTGGACAATGGTTCAAGTCTGTACTCAAGCCCCTTTCGGGTAGGTGAG
TTGTTCATGGACAAGTGTCTGTATAGAAGCTTTGCAAGCCGTTGTAAGGG
GGTAATGACTTTGATTTCGAATGTAAGGGACACAGGGGAAATCACGGGTT
GCGTAGGCGTAGCTGGGGTTGTGTTATTTGTTTGTATATATGTATTTATG
CACGTGCTTGAGGAGATAATAGTAACCCCATCCATTTAACATTTCGTCGT
GAAATGTATCAAACGGAGTCATGCAACTATGGCGGGGGGGTGGAATGTTA
GACCCGGGATGTCATTGTATTGTTGACTATATCAAAAATTGTACTTTCCT
TTGTCAAGATGTTGGTGCTATACCAGATAAAGAGGCTGATGTAAACTATA
CAGGGGAGGGTACGGCAACGTCTACGGCGCGTCATTTGGCCCTTTTGAAC
CCCACCTCGACCGTTGATCTAAGGTGAAATTGGGGAAAGTCGAAGGATAC
GATAGAGAGGTCTTTTGAATCCTGGGATTGCACAAAGAAGGTGGTAGTGG
TTCTAGGAGATGATAGAAATTTACCTGAAGAAGCGAAGGTAGAGGTAGAG
AGGATATATACGTAAAATATGTTTGAGACGCGTCTGGCAGCGTAGGAAAG
AGCGATTGGCCATCGGAAATCGATCTAATAGGGAAAAACTCCGCCCTCCC
CAGGACGCACGGTCAATTACAAAATAAAAAACATGAGTGCGCCCCCCCCT
CCTCCCGACGGTTGTAGGACTCATAATACATTATCAAAATTGCAAGGTGG
GGTGCCCTGCAAGGGTTTCTTCGAGCTACGCATTTTTCAACTTCGGCACC
AACAATCAAGCGTTGATACATCGATCCACGAAAAAAAATGAACAATTGTC
CGATAACGGAAGCTATAGCATGGAATCGGTTCTGTTCTGCAGTCACGCAA
AGGGTATCCCCAATCAACACATGGTTTGGCCAACATGGCAATCGTAAACG
TGGTTTGGTTTTCTGCAAATAGCGAAATTTACTTTCATTTCGGTTCGTTT
TTTTAGGAAAACAACTGACATATCATTTACTTATTTTTGAACAACGGAAG
CAGATCTATCGTCTATGATATGGTTATTACGAAACACTGGGCATCGCTTA
TTAGAACTTTAATGGCACGAAGTTAAGATGGCCCACCTTAAGAAAAGCAC
ATCAATAGCACTGAATACGTCCTATTTTTTGGACAAGGTAAAATGAATAT
AGTTCCTCAATTTTCTACAATAATACAACATCAAATGCCTGGTACATGCA
CACTTTATCATCTAGGATCGCCAAAAAATACACAACACAAAATATCATCC
TCCATTTCGTTCCTTGACAATCAAAGACCAAAACATCAACGTACCGTACA
CTGTATTCCATTCATCAATTCGAACCAACTCACAAACAAACGAACTCAAA
CACGCACTCTCTCCATCGCACTCCCAATACAAACAACGGTCGCCAAATGG
GCGCCGGGAGCACACACCAGACCCGACTCTAGTGAGGGATCCATCGCATC
CGTACCCGCGGTCGGACGTCGATCCAGAGACGACGTCGAGAATGCTAGCG
TGTCCGCGAGCACGTGGCCAGGTGGAGTGCTCGACGGAGGTATTTCGATG
ACTGTCGGTCCGAAGCAGATCAGGGTCAAACGGAAGGGCAGCGGTGCTAC
GGGACAAACCATGGGCATCAAGGTGCGGAAATGGAGATTATCGGGTTAGG
GTTAGGAGTGTGGGGTTGGAGGGTGGGGATTTGTGAAAGATCGTTGCCCG
TAGTGAGCACCCTTTGACATATGTGTCTGGTCTACCCAATACAATTTTTG
TTTGTCTATTTTGTAGTCGATTCACCTTAAATTTGTCTTCGTGTATGTGT
GCTATCTTGTCTCTGTGGACTCTCCATGCATGCATCTGGGCAAAGGAACA
TGAAACAAGATGCGTGCGAACCCAGTGGGCAAAGTACTTGATTTCCTCTA
ACGCCGAACAAGAACTCAGTTGGTTTTTCCCGATCTGCACATTGCCGAAA
GGCGAAGTGGTCTGAAGTCTCGAGATATGTATATAAATAGAGAGTAGATT
TGGTAATTTTTGAAACCGGTAGATGATACTCGCAAGCCGTGTTGCACTCC
TGATGGAGTTAGCAGACGATTAACCTGTTGAAGTTAGAGCCACGGCTGAC
ATATCGAAAAATGCGTAATTGTACCTCTTGTAAGCAATAATTAACGTTTG
ACTCGTGGTACCATCGCTTGTATTGGCCGATAAATACCTCTTCTGCGCCA
TAGGTATACTCGGCTGCGCTTGCACAAATCGTTAATGATTTCCGATTATG
TTTCATCTCTATTAGAATCCTGGGCATCTTGTGAATTTAACCCTGTTTGG
GGGTCATACAATTACCGTTTAAAACCAAACCTCACGCTGCGAAAAAAAGC
CCTTGGTCGAACAACGTCATATTTTTTCCATTTTCGAAATTTTTCAGGAA
ATCAATCAACATAGACCTTGCTGACACGAGTCCCCACGTTCTCGGAATCG
GAACTCGGAAAGATCCTCAGAACGCTTCTCTTTTTTATCCTTCCTTTGAT
CTCTTACACATACAGTGCAGTTACGTAGACCCCAGGATATAGGCCGCTAC
GGATGGCATGTTATCAAGGATGTTCGTATTTATCTCCAGCTGTCTTTTTC
CGAAGAGAGAAATTTGGAAATATGGCATTTTTTCGTCCGAATGTTTTTTC
GTTCATGGCATGTGTATTGGTGTAAAACGGTAACTGCTTGACCCAAACGT
TTGGGGTTTAACCCCCGATCGTGTAGCATCCTATTTTTTCAAGTATAATA
AAATCGGAGATAAGTAATATCTTCTACACGAAATAGAATATTGTATACTT
ATGGGACGGAGGAAGTTTGAATATACGTGGGGGAAAATACGCACCATATC
GTACAAAACATCTGGCGCCATTACGCTCCTTGCCTCCCTCCCTCCCTCCC
TGGACGTGCGCGTTGCTAGGAGGAGGCCGACAGAAGAGAGAAGCCTGAAT
TTCACACAGATCTCACGACGACGACCTCCGTTGCGCTATATCGCTCCGTG
GTGGCTTGCATCATCCGGATTTTCGTTAAGGTAGGAAGGCGGCATGTGAT
TCTGTAGCTAGCACCAATGGGCCAGTTGCAATAAATTAGCCGATAGTTCG
GGGTATTAACAATTTCTTCCGTTTCCAGAGTCGCAACAATTTAGATTCCG
CCCCATGACAGCTCTTGCTTATTGGAAGTGGGCTCAATAGATCATCTACC
GGATTTCGGCAGTGTGCCAATTTTCCTGAAGAAAAAACTGCAGCGCTGAA
AATATTTGTCGTCCAACATGCTTTGCTCCAAAGCTGTCTTGTTTGGCTTG
AAGGCCTGTGAGTCAGAACGATCCATAACAACTTACTGTAATACCCCGTG
ATATACGTTTTCAAACCCGATTTTCATGAGGAGCAAGAGCCTGTACTGCC
AAAACAAGAAGTCTATCGAATGATCTCAACAGGGTCTTTCCAACGATACC
GCTCTATCGATGTCATGAGCACTCTCGTAGTCGACAAAATCGAGTTTGAA
AATATACCATCAGGGGGTGCGATATCAAAGGGTGTTACCGTACAGGGCTA
TCCTATCCGCACTTGTCGAAATATGTATTCATGTGTGTATAATCGCGGAC
TCGAAACCAATTCTCATGTCCCACACCCAAGCGAAAGTTTGTCTGTTTGC
GCTCATATATCCAATAATTGAATTGATCTCACTCCAAATAGTAATCTGTA
TCCAAAATTAGCTACCAAGCGAATCCCAAAACCAGCCTAGTATTATACCG
GGCGTACCAAATAGTTGAAGGTACGGCAATGGCACTTGACTCTTTGGGCG
CCGGTCCTAAGAGAACCCGCACCTAATCCCCACCTGAAAAAACAGGAACG
ATCATATCTATTTATTGACACGACTACGGGGATAGGGAGCTGCCACTTTG
AGATGGGCAATGTACAGATAGTCAGCACATACAGCCCGAACAGGGAGTTG
GTATAAAACTTGAGCGCACAGCGACTGCAGCGCTTGCCATTTAGGATTTT
ACTCCCACAATCGTACTTTCTCGTGATAAGTAAATTCAGTCGATTTCTAT
CGATACCGGTACATAAATCGTCCATCGTGACTAGGTAGGAAACAGTTATG
ACTATTTGAATGGGTCCTTCTATGCATCATTTTTTCGGATGAAGCGCCAC
TCAGAACGTCATATCGGCCTGCAAAATATGTACAGCACTGGCACCCTAAG
GCTTAACGATCGATTCTATCCATTCCATAAACACAAACCCAGACCCACTG
CGATTGCGCGACGTGCATTTTTTTCCGCCCCTCTTCCTACTTCATTCCCT
TCACGTTTTGCGCTTTTGTACCGGCAAAAGGTTATCCCTTGCGGGACTGC
AACGCTGTTGTCAATGGATTCTACCTGGCCCGTGTCGTATCTTTACGATT
TGTGGAGGGCCAACTCTGTGGAGGGAAATGCGTGCGTTCATATCATGACA
CATATATGGAATGAAACATGAAGTATCGCGAAAGTTAACGCGCAGTATGT
ATGGTTTATGTCGACCCTGAGTATATGTATATATACTTATATAGGAGGAG
AGATATAACCAACAGGTCATGTGTCGAATCCTACGTAGTTCGTTTTAAGC
ACTGGGAGTGGTCCGGCGGGGCTTGTCTCGTTTCAAAGATCGGTTACCAC
CATAGCTGATGATAATCTTGAATTTGTGGTGAATTTCACGTTTTGTTGCT
CGTCAGACATGTGAATTTGCTCACGACTTCGAAACCTCATCAACCCCAAG
TGTACATAGAACTCTGACACAAGTGCTGCGTATATACAAACAGCAGATGT
GAATTCAGGCACTACTGTCATCAATAAAATCGATCTAGTCACTGCGAGGT
ACCTTCGACAACAGCATACCGCTAGTTGTTATGTGGGTCACAACGACAAC
AGCATGATGAGGTAATAGAAAGTGAGCGTCATCTTCATTTCATATTGAAG
GACTAGTGCTGGGTCATCCTCCAACCTTAGCGTTTTCAACAGCTCCTATT
CGGAGCACATGTCGTGAAGATATCACTATTTTGTCCTGCTGATTTTTTTC
TTCACAAGACGAGACGAATTGGAGGCTGTGATGGTCGGTCTCGTGTGTCA
CTACAAATGACCATGTACGCAGGGCAGTATATGTTCAATATCTCACTTAC
CCATCTGTCAATCTGTCTGTTCGTTTCATGTTCGTTTCTGCGCCGGTGGT
TATCGTCAGGGAAGATGCCTTCATGTTCTTACCCACAATGAGCGGCCAGT
GGAGCTTGGACAACCAGAATATCCCGGAAACAGAGACCAGCCTCGGCGTT
CACACGGGGAGCTTACCTCTATCCAGGTTTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2457:12634..18266+

>mRNA_H-paniculata_contig2457.6662.1 ID=mRNA_H-paniculata_contig2457.6662.1|Name=mRNA_H-paniculata_contig2457.6662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig2457:12634..18266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCCATCGTGCTGGGAGTTTCCTGAGGGGTGGGCGCCGAACGACTTCGC
TTTCCTCGGCCCTTTCACAGATAGCGCGCTCCAGGCTTCCTCACCAAGCG
ATTCTCGAGCGACCGCCAGTGTCCATCGTGCTGGGAGTTTCCTGAGGGGT
GGGCGCCGAACGACTTCGCTTTCCTCGGCCCTTTCACAGATAGCGCGCTC
CAGGCTTCCTCACCAAGCGATTCTCGAGCGACCGCCAGACCCGACTCTAG
TGAGGGATCCATCGCATCCGTACCCGCGGTCGGACGTCGATCCAGAGACG
ACGTCGAGAATGCTAGCGTGTCCGCGAGCACGTGGCCAGGTGGAGTGCTC
GACGGAGGTATTTCGATGACTGTCGGTCCGAAGCAGATCAGGGTCAAACG
GAAGGGCAGCGGTGCTACGGGACAAACCATGGGCATCAAGACCCGACTCT
AGTGAGGGATCCATCGCATCCGTACCCGCGGTCGGACGTCGATCCAGAGA
CGACGTCGAGAATGCTAGCGTGTCCGCGAGCACGTGGCCAGGTGGAGTGC
TCGACGGAGGTATTTCGATGACTGTCGGTCCGAAGCAGATCAGGGTCAAA
CGGAAGGGCAGCGGTGCTACGGGACAAACCATGGGCATCAAGGCCGACAG
AAGAGAGAAGCCTGAATTTCACACAGATCTCACGACGACGACCTCCGTTG
CGCTATATCGCTCCGTGGTGGCTTGCATCATCCGGATTTTCGTTAAGGCC
GACAGAAGAGAGAAGCCTGAATTTCACACAGATCTCACGACGACGACCTC
CGTTGCGCTATATCGCTCCGTGGTGGCTTGCATCATCCGGATTTTCGTTA
AGGTTATCCCTTGCGGGACTGCAACGCTGTTGTCAATGGATTCTACCTGG
CCCGTGTCGTATCTTTACGATTTGTGGAGGGCCAACTCTGTGGAGGGAAA
TGCGTTATCCCTTGCGGGACTGCAACGCTGTTGTCAATGGATTCTACCTG
GCCCGTGTCGTATCTTTACGATTTGTGGAGGGCCAACTCTGTGGAGGGAA
ATGCGGAAGATGCCTTCATGTTCTTACCCACAATGAGCGGCCAGTGGAGC
TTGGACAACCAGAATATCCCGGAAACAGAGACCAGCCTCGGCGTTCACAC
GGGGAGCTTACCTCTATCCAGGTTTGACGGAAGATGCCTTCATGTTCTTA
CCCACAATGAGCGGCCAGTGGAGCTTGGACAACCAGAATATCCCGGAAAC
AGAGACCAGCCTCGGCGTTCACACGGGGAGCTTACCTCTATCCAGGTTTG
AC
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