mRNA_H-paniculata_contig2457.6661.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2457.6661.1
Unique NamemRNA_H-paniculata_contig2457.6661.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2457.6661.1 vs. uniprot
Match: D8LFE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE7_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 3.470e-66
Identity = 113/197 (57.36%), Postives = 135/197 (68.53%), Query Frame = 1 
Query:   10 QTGKRPHPEVVHPAFLGYFHRRKTGLSTCNSQVKSPVFFGTLSGALTRQEAVRGNGNLSTLKFLVKQEAFF-------GARDAPAERATSVETRTCLRFPLAPATRGKVRQRLREVGEAYDRGEVVHPSCFSMLFIPDMQDCRQQSPVFFGYEMARKPRARESAGGATEDEPAPSLEDYVSRRAGKPCVVCLVGKPG 579
            Q GKRPHPE +HPAFLGYFH+R++     +  ++SPVFFG LS ALTR+EAVRG GNL+ LK L+   +F          ++A   +  S    TC  FPLAPATRGKVRQRLREVG  YD   +VHPSCF ++ IPD QD R QSPVFFGY++ +KPR+R   GGA ED   P  ED+V  R GKPC VCLVGKPG
Sbjct:  511 QVGKRPHPEDIHPAFLGYFHQRRSPKGAWDPALRSPVFFGKLSEALTRREAVRGEGNLAALKALMSGASFDRRSSQGEARQEASVGQNNSSPCSTCQAFPLAPATRGKVRQRLREVGTTYDSAGLVHPSCFGLMTIPDDQDSRHQSPVFFGYDLVKKPRSR---GGALEDHEKPKREDFVVHRKGKPCPVCLVGKPG 704
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BLAST of mRNA_H-paniculata_contig2457.6661.1 vs. uniprot
Match: A0A6H5K0L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.130e-15
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  388 LFIPDMQDCRQQSPVFFGYEMARKPRARESAGGATEDEPAPSLEDYVSRRAGKPCVVCLVGKPG 579
            + IPD QD R QSPVFFGY++ +KPR++   GGA ED   P  ED+V  R GK C VCLVGKPG
Sbjct:    1 MTIPDDQDSRHQSPVFFGYDLVKKPRSK---GGALEDHEKPKREDFVLHRRGKSCPVCLVGKPG 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2457.6661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFE7_ECTSI3.470e-6657.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0L0_9PHAE5.130e-1559.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2457contigH-paniculata_contig2457:5265..9720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size585
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2457.6661.1prot_H-paniculata_contig2457.6661.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2457 5265..9720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.1735685-CDS-H-paniculata_contig2457:5264..53691622929713.1735685-CDS-H-paniculata_contig2457:5264..5369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 5265..5369 +
1691480978.490446-CDS-H-paniculata_contig2457:5264..53691691480978.490446-CDS-H-paniculata_contig2457:5264..5369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 5265..5369 +
1622929713.1879866-CDS-H-paniculata_contig2457:6689..68631622929713.1879866-CDS-H-paniculata_contig2457:6689..6863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 6690..6863 +
1691480978.5102632-CDS-H-paniculata_contig2457:6689..68631691480978.5102632-CDS-H-paniculata_contig2457:6689..6863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 6690..6863 +
1622929713.1984117-CDS-H-paniculata_contig2457:8062..81661622929713.1984117-CDS-H-paniculata_contig2457:8062..8166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 8063..8166 +
1691480978.5212588-CDS-H-paniculata_contig2457:8062..81661691480978.5212588-CDS-H-paniculata_contig2457:8062..8166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 8063..8166 +
1622929713.2134418-CDS-H-paniculata_contig2457:9518..97201622929713.2134418-CDS-H-paniculata_contig2457:9518..9720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 9519..9720 +
1691480978.5303147-CDS-H-paniculata_contig2457:9518..97201691480978.5303147-CDS-H-paniculata_contig2457:9518..9720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 9519..9720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2457.6661.1

>prot_H-paniculata_contig2457.6661.1 ID=prot_H-paniculata_contig2457.6661.1|Name=mRNA_H-paniculata_contig2457.6661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MWLQTGKRPHPEVVHPAFLGYFHRRKTGLSTCNSQVKSPVFFGTLSGALT
RQEAVRGNGNLSTLKFLVKQEAFFGARDAPAERATSVETRTCLRFPLAPA
TRGKVRQRLREVGEAYDRGEVVHPSCFSMLFIPDMQDCRQQSPVFFGYEM
ARKPRARESAGGATEDEPAPSLEDYVSRRAGKPCVVCLVGKPGK*
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mRNA from alignment at H-paniculata_contig2457:5265..9720+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2457.6661.1 ID=mRNA_H-paniculata_contig2457.6661.1|Name=mRNA_H-paniculata_contig2457.6661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4456bp|location=Sequence derived from alignment at H-paniculata_contig2457:5265..9720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGCTCCAGACTGGAAAGCGACCACACCCTGAGGTTGTGCATCCCGC
GTTTCTGGGCTACTTTCACCGAAGAAAAACTGGACTCAGCACTTGTAATT
CTCAGGTAGGATATGTATTATATATTATGCGATCAAGATGTGAAGGGCCC
TGCCCGTTGGTACCTGCGGGGAACTGTTCCCTGCCGCCGACGGGGGTGGT
GTGTGTATGTATATGTCGGGCACATTTTCGGCGTTTTTCTTCAATACTCC
GGGAATTTCTTTTTCTTCTAACTGTGGGTCTGGGCGAGCGATCATCAAGA
GGCAAAGGATGCTAGCCCGGGAGCAATGGAGAACGAAACGGAACATCCAG
ATTACTTCTAGACCTAGTCCTGACCCTTGCCCTAGCTCTAGGCGGAATCA
AGTGGGGACGGTGTGCGAATGGAAGGCGGGTACCTTGGGCTAATTTTTGA
CAGAGCAAACAACAGTTCAAATCCTGCCTAATCCTGCGTATTTGTGCAAC
CTTCAAACCTCGAACATACAATGCATCATGCCGACAACGAGGCCAGTATT
TTTTGCCCAAGAAATTCGAGAAAGTAGTAGAATCGAGTCTCCTCCTCGTT
TCTTACTCGAATGAAAGGGATAAAAATACTTCATCGCTCGCCCTCCCGTC
CCCTTCTTTCACCTTTTTCCCTTTCCTATTTGGTATTGTGGTCCCAAAAA
CTCTCACCTCACTTGTCCTCGAAACCATATTTGACATATTTTGTGTTTTT
ACACTCCTAAGAGCGCTCGGTTCGTTTTTCGTCGAAACCATATCTGACAT
GTTTTGTGTTTTTACTTTTTCTTCACGCACCTATGCAGTGTAAAAGGGTC
ATACTCTAACATGCAAGTATTAAGTATTCCAATCCGAATTCCCTGGGTGT
AGATTTAATCCCGCGTGGTACATCATTACGATCCCCCTTTCGATGCTTAC
GGTTGCTAATACTGATATCTACATACGTGCTGCATCACTTCAGGTAGACT
ACTAATACGTAGGCTTAATGTACAAGTCCCCCCCCCTCTCAGACATTAAC
ATATTTTCGATCTTGTGGTCGGTTTGAGTTGAGGCGAACTCAGTAGTTGA
AAGATATCCGCACCCATCCCAGCATTCCATTCAACAGCAATATTTCCACC
CCATCGCCCTCCCCCCGCCGGCCACCCTTTTCCCTCCATCTATCCCTTCG
TCTCTCTCTTTCTCTTCGCTTCCCTCGTCTTGTCTCTTATTCTCTCTGTC
TCGGTTTGTCACTTGGACTCCCTTTGCGTCTGACTATCTCTGTCTCTTAT
CGTATCTTGCTGTCTCTCTGTTTCTTATCTCTCTCTCCCACCCACCGCCC
CTTTCCCTTGTGCCTCTGACTCTCTCTCGCTCTTTCTTGTCTGACCTCTG
CTGAATCAACACAACAAACTGCAAGGTTAAATCGCCCGTTTTTTTTGGGA
CCCTGTCGGGGGCTCTAACAAGGCAAGAAGCCGTTCGAGGAAACGGAAAC
CTTTCGACTCTCAAGTTTCTCGTTAAGCAAGAGGCGTTCTTCGGCGCCAG
GGATGCGCCGGCGGAGCGCGCGACGTCAGTGGAGACTCGCACGTGCCTGG
TAGGTAGAACAAACGTTTTAACACACGAACGTAGGGAATGAAATTCTCAA
CGCACTACTGCGCCGACTGTGAGTTGGAGCATTATACCTACACCTTATGC
CTGATATAAGGGACGGTAGGTAGATCTGCGTCGGGCGAAATCGATCTTAT
GCACACACCGAAACAAACAGTACTTCTGCTTTGTTTCTAATAATCAAGTT
CATTGAGTGAATCCGCTGTGCAAGGTATTCGCCGAATATTGGAGAGGTAT
TGACTGAATTTTTTATTGGACATTTCGGATCATACAGGGTACATCGCATA
TTCTATTCGTCCGAGGTCACTTGAATTTTTTCGTTTTTATCCGGGGGGGG
AAACGTTTCTAGATCTGGGAAATTTCCGAGCCAATTTCTAAACGAGACAT
TTTTCCCGCAATAAATTCAAAAGGCCTCGCTAACATGTCACACGATGTTG
GATACAATTTAAAAATATTGAGATCAGTTAGGTCATCCAGCGCCACATGC
TAGGTGGCACAAGCGGCACACATTTTAGTCGGCTACGAATGATTCCAGAA
CGGAAGGGAGTCACTCCAATTTGACCCCCCGCACAACCGGGGATCGTAGG
GAACATTATCGCCTTGCATACCGCCTGCAAAACGCGTGAACACCGCGTAA
CCTGCTGTTTTTCATGTCGAGTCAATGTGCGCGAAAAGGATTCTAGACCG
TGTTCTGACTGATCAAATACTCCACATTACTGAGCATCTTATCGGAAACG
GTGACCCATTGCAGCGGCTGAAAGGCACGCATGAGAAAGGTGCCAGGATA
AACTGGCTGCCTGTTGTTGCTTTTGTCGCATCAGTCCGAAACGGTGTAAA
TGGTCGGAAAATTATTCTCGCGAGCTCGTCACTGGTGTGTACCCGAAAAA
TGCCCAGTCTCTACGTGTTTGCAGATACTATAGGCCCCAATGTGCACACG
ATCTTGCTCGCAGGAAATGTGGGTTTCTCACCCACAAAACCTGAATGGGC
CTCCTGGATTTTTGCCCAGTCCACGGGCTACCTTATCCTTTGCGCTTGCA
ACCGTGTTTTTGGTGGCCTTGACTACACACGGGAACCCCCGCCCTCCCCA
CTCTTCGAGGCACGTGTGCCTAAAATACGCTGGATATCTACCTGAGTAGC
GTGAATCTTACGATGCTGTGTGCTCGCGAAACCTGTGGATTTTCCTAGAG
ATTTCCTCTGGCCCCCGCGACTCGCGGAAAAGTGCGGCAACGTCTGCGTG
AGGTTGGGGAGGCGTACGACAGAGGAGAGGTGGTGCACCCTTCCTGCTTC
AGGTAAGACTACTTGTTTCACGTGTTTGGTCCGGAGGACTTCGAGGGGCG
ATGAACGATGGAAGCTGAAAGCTGAAACGATGTCAATCAGAGTAGACAAA
TTTTCATCTGAATTATGAGCGACAGCCAAAACCTTGCATTGCGTTAATTG
TCAACCAACCTTTTTGTAGCCAATTGGTTCTTATTTTGTTTTTGATGGGT
GGGTAGAAAAACAGCGGATGCCTTCTCCCTCCTCTCCTTCTAGCGTACGT
GGTGAGCTCTAAAATCAAGAGCCCGATCCTAAGCAAAGCGCTACGATGCG
AATCGCTTCAACTGTTTTCGAACAACGGGGGTATCTATCTACATGAGCAT
ACGAATGCCGATCTATCGCAACAACTTGTATAGCGGCATGAAATAGAGAA
CCGAGGGAGACAGAATTTTTTTTCTAACTAGACACAAGAATAATAGCTGG
TTCTGAATATGGCTTCGTGGCGACCGTCGCAGCAAATTCACAAACCTTTA
ATTGATCTGGGCGTGTTGCTTTTTTTCATGTTCCCCCGTGCGCAGGCGCT
ACCCCAAGCTTTGTCAATGCTATAACTTACGTCTATAACGTACCCTGTCC
CCCTTGCCAATCTCGATTCTAGAGCCGTTCAATGATCGGGGGGCGTCAGC
TTGGGCAAAATATTAGGCACTGTACAGCATGCGCCCTTGGGATTCTGCTT
TAGATTCCCGTAAAACATGACGTCGATCTTATCCGGTACATAGCACTATC
GCAAACGGGATAGATGAATAGGATAGGAATGCCCCCCGAGCGGGAGCAAA
CGTATGTGTTCCCTCCCTCGAGGGAAGTTCCCTAGACTAATTCCCTATCC
CCACTCAATCGCTGAATGACTCACTACACGTCCAAGACCATAATATCCGG
GTGCACAGGTCTCTCACTCCCCACCCCTGATTGTCGCCAAGCACAGCACT
AGCCATATGCGTAATACTCTGTCTCCAACCAAACCCCTTACCCGAACCAA
AACCAATCCCAATTTCCAACCCGACCTCATTTTTCATACTATAGGGGAGA
GGCCATGTCTGGAGCTTGACAGTCCCCTGGGAGTGGGCTACCCAACGGTC
TTGAACGTTTCAGCTCTCTCCATTTTTTTTTCTTGTTTCTAGTACGCATG
TACGTCCGTGGAGCCGTCTGCTCTCATTCGTAAGGAATCGCTTCTAACAC
CAAAGCCAGGGTAGGTAGCTACAGTAGACTACTCTGTACAAAAGAAGGGG
GGACCCTCTCGAGACACTCCCCGCCCTGCTAACCCACACCCTCACTCTTT
CCCTGATATCGCTCGCTTGCTTTTCTCGTGGATTTGGTACTACTATTACC
ACAGCATGCTATTCATCCCAGACATGCAGGACTGCCGGCAGCAATCGCCT
GTCTTTTTTGGATACGAGATGGCGAGAAAACCGCGCGCAAGAGAATCGGC
AGGAGGAGCGACGGAGGACGAGCCCGCCCCGTCCCTTGAAGACTACGTTT
CTCGTAGGGCAGGGAAGCCGTGCGTCGTATGTCTGGTGGGGAAACCTGGC
AAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2457:5265..9720+

>mRNA_H-paniculata_contig2457.6661.1 ID=mRNA_H-paniculata_contig2457.6661.1|Name=mRNA_H-paniculata_contig2457.6661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig2457:5265..9720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGCTCCAGACTGGAAAGCGACCACACCCTGAGGTTGTGCATCCCGC
GTTTCTGGGCTACTTTCACCGAAGAAAAACTGGACTCAGCACTTGTAATT
CTCAGATGTGGCTCCAGACTGGAAAGCGACCACACCCTGAGGTTGTGCAT
CCCGCGTTTCTGGGCTACTTTCACCGAAGAAAAACTGGACTCAGCACTTG
TAATTCTCAGGTTAAATCGCCCGTTTTTTTTGGGACCCTGTCGGGGGCTC
TAACAAGGCAAGAAGCCGTTCGAGGAAACGGAAACCTTTCGACTCTCAAG
TTTCTCGTTAAGCAAGAGGCGTTCTTCGGCGCCAGGGATGCGCCGGCGGA
GCGCGCGACGTCAGTGGAGACTCGCACGTGCCTGGTTAAATCGCCCGTTT
TTTTTGGGACCCTGTCGGGGGCTCTAACAAGGCAAGAAGCCGTTCGAGGA
AACGGAAACCTTTCGACTCTCAAGTTTCTCGTTAAGCAAGAGGCGTTCTT
CGGCGCCAGGGATGCGCCGGCGGAGCGCGCGACGTCAGTGGAGACTCGCA
CGTGCCTGAGATTTCCTCTGGCCCCCGCGACTCGCGGAAAAGTGCGGCAA
CGTCTGCGTGAGGTTGGGGAGGCGTACGACAGAGGAGAGGTGGTGCACCC
TTCCTGCTTCAGAGATTTCCTCTGGCCCCCGCGACTCGCGGAAAAGTGCG
GCAACGTCTGCGTGAGGTTGGGGAGGCGTACGACAGAGGAGAGGTGGTGC
ACCCTTCCTGCTTCAGCATGCTATTCATCCCAGACATGCAGGACTGCCGG
CAGCAATCGCCTGTCTTTTTTGGATACGAGATGGCGAGAAAACCGCGCGC
AAGAGAATCGGCAGGAGGAGCGACGGAGGACGAGCCCGCCCCGTCCCTTG
AAGACTACGTTTCTCGTAGGGCAGGGAAGCCGTGCGTCGTATGTCTGGTG
GGGAAACCTGGCAAGTGACATGCTATTCATCCCAGACATGCAGGACTGCC
GGCAGCAATCGCCTGTCTTTTTTGGATACGAGATGGCGAGAAAACCGCGC
GCAAGAGAATCGGCAGGAGGAGCGACGGAGGACGAGCCCGCCCCGTCCCT
TGAAGACTACGTTTCTCGTAGGGCAGGGAAGCCGTGCGTCGTATGTCTGG
TGGGGAAACCTGGCAAGTGA
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