mRNA_H-paniculata_contig2457.6660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2457.6660.1
Unique NamemRNA_H-paniculata_contig2457.6660.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2457.6660.1 vs. uniprot
Match: D8LFE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.520e-19
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:  418 RNMKASRAAMYAEEELVKRMKHLLENREESKAIKRTQGKHIRAKVLESMQQAKSFDDQLGAAGQWGMSKRTVELAKLGLEDCKSGQ 675
            R  +  R   YAEE L +RM HLL  R+ +KAIKR Q K I+AK+ E M +   F+++LG AGQWG SKR+VELAKLGLEDC+SGQ
Sbjct:  426 RRRQPRRQVDYAEEALTERMAHLLSQRDRTKAIKRAQQKAIKAKLAEMMYETHKFEEELGGAGQWGSSKRSVELAKLGLEDCRSGQ 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2457.6660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFE7_ECTSI1.520e-1958.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2457contigH-paniculata_contig2457:283..3948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size679
Cds size678
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2457.6660.1prot_H-paniculata_contig2457.6660.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2457 283..3947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.1050618-CDS-H-paniculata_contig2457:282..4511622929713.1050618-CDS-H-paniculata_contig2457:282..451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 283..451 +
1691480978.4504116-CDS-H-paniculata_contig2457:282..4511691480978.4504116-CDS-H-paniculata_contig2457:282..451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 283..451 +
1622929713.1180668-CDS-H-paniculata_contig2457:1455..17831622929713.1180668-CDS-H-paniculata_contig2457:1455..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 1456..1783 +
1691480978.4609196-CDS-H-paniculata_contig2457:1455..17831691480978.4609196-CDS-H-paniculata_contig2457:1455..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 1456..1783 +
1622929713.1284323-CDS-H-paniculata_contig2457:2773..28461622929713.1284323-CDS-H-paniculata_contig2457:2773..2846Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 2774..2846 +
1691480978.470623-CDS-H-paniculata_contig2457:2773..28461691480978.470623-CDS-H-paniculata_contig2457:2773..2846Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 2774..2846 +
1622929713.1376004-CDS-H-paniculata_contig2457:3839..39471622929713.1376004-CDS-H-paniculata_contig2457:3839..3947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 3840..3947 +
1691480978.4805079-CDS-H-paniculata_contig2457:3839..39471691480978.4805079-CDS-H-paniculata_contig2457:3839..3947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2457 3840..3947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2457.6660.1

>prot_H-paniculata_contig2457.6660.1 ID=prot_H-paniculata_contig2457.6660.1|Name=mRNA_H-paniculata_contig2457.6660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
YSKYFSSQEGLRNAREILMLGFMSEQESAEVAERHTLDLTRRRRLRKMIK
HRKRNKERNRKQNARLIATGARLKLEGVVYVQGHRWAQSSDWNRKPGTHP
DQIATTGQSLVQANRVSSPAARDVGPLTNGVDAVDTRIARNMKASRAAMY
AEEELVKRMKHLLENREESKAIKRTQGKHIRAKVLESMQQAKSFDDQLGA
AGQWGMSKRTVELAKLGLEDCKSGQA
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mRNA from alignment at H-paniculata_contig2457:283..3948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2457.6660.1 ID=mRNA_H-paniculata_contig2457.6660.1|Name=mRNA_H-paniculata_contig2457.6660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3666bp|location=Sequence derived from alignment at H-paniculata_contig2457:283..3948+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTCAAAATACTTTTCAAGTCAAGAAGGGCTGCGAAACGCCAGAGAGAT
ATTGATGCTTGGCTTCATGAGTGAACAGGAGAGCGCGGAGGTTGCCGAGA
GACACACCTTAGACCTCACGCGAAGGCGCCGCTTGCGCAAGATGATAAAG
CACCGGAAACGCAACAAAGGTGAATAGGCACACACTCATACACTCAATAC
CCAATACCACTCTAAACGTACGTATTTTTTACCCTTCGAAAACGGAATTA
TATTGACTCGGCCGCAGTAGAGTGCTATTTTTACTTCGGCGTGTATAATA
GTCCACCCGGCCCAATCATTGCACGCATCTTCCGGGGGAGGGAGAGGATA
CCCAGTGCGAGCTAAACCCCCATCTGAGGTAACAGGAGAACGTAACGCCC
ATGGCACGATTGCTGTGATAAGAAGCCGCGATTGTTTAGTCAGCCAGTCT
ACTACAGACCGTACATGCGGTGCAGACTGGGAGTTGGCGTAAATGCTGCA
GGGAAACAGCGACTATATTTGGGGCTATGCCATATTCGCTTGTTTTGCAC
AAGGGTAATATCGAATTGTCGTTTCCCTGCCGGGAGCAAGCAGGGTCTAC
ATCGTGATGTTGACCGTTCTGGGAGCCTTAGTAACTTGCTAGAACTCGCC
CATCCCCCTTGTGATCGTCTTATGAAAATTGGTTTTCATCCTCTTTGGAG
GAGGTTTTGCTAATGGTCTATTAGGAACGATACACACAAACACGAATATC
TCCCCAAGGTTTTCAAATATTGTACCCTCCGGATGAAAACGAATACTTGG
AGTATTGTCGACAAAAAAGAACAAGCATTCACCTGCAGGTTGAGCATGAG
CACGTCTATTCTATGTGCCCCGAAAGGACCTTTTACGACTGATCCGAATA
ATAGTAAAACGAACAATCAAGGCGTCAACACTTTACTCAAATGTGCCCGA
ACATATCGAACCTTGAGGCCAATATTCCAAGAAAATATTGGTATTCGTCC
CTCTGAAGGGTGGAATATCTCTGATGAAAGTATCTAGCCAGGATTGTAGG
CTGAAAAACCTTAGCAGGGAGGTGCACTAAAACTATTGTCGTTGACACGA
AAAAACATTTCCTCCCGCCCTGTCCCTACCCTCTGGTCTCCATTGTGTGT
ACCTGTGCCGTACATGAGCCCAGAACGCAATAGGAAGCAAAATGCGAGGC
TGATCGCTACGGGAGCACGCCTGAAACTCGAAGGCGTTGTTTATGTACAA
GGCCATCGTTGGGCGCAATCCTCGGATTGGAATCGCAAGCCAGGCACCCA
CCCGGACCAAATCGCCACAACGGGTCAAAGCTTGGTCCAGGCGAACCGGG
TATCATCGCCTGCTGCGAGGGATGTGGGGCCACTCACGAACGGTGTGGAT
GCCGTCGATACGCGCATTGCGCGAAATATGAAGGCTTCCAGGGCGGCTAT
GTACGCCGAGGAAGAGCTGGTCAAACGGATGAAACATCTGTTGGAAAACA
GGTAGCTGCCTAGGGCGTGAGAGGGGGGGAGTTGATAAAACAATTCGTGG
TGAGGGTCCTACAGATTGGGTTAGGACCTGCATGTATGCTGAATCAGCAA
CTGCATACCGAGAAGAGGGGCTGTTCTGTCAAGGCAATTTCTATTATTTT
TCCACAAAACTACTCCAAAAGAGGCGTCCCAATTTATTGTAAATTTCTTG
CGAATGTGGAGTCAATCGTTTAGCCCCCGGCGCCAACACGGACGCACCGC
TTGACCGTGCCGATGTGCGTGGTACGGTGAGTGGGTGCGTATGGAGGGCA
GCAAGCAAACCACTAATCTACAATGGGTGTCACCAGTGACTACACACCCT
AGTTCATAGCACCAAATTAGGTTGATAAAGCGAAAACCAGAGTAGAAGAT
GTTACAGTATCACACTCACATGACCCCAGTTGTGGTGCCTTAATTAACCG
GATGATCGCGCGCGGAAGGTTCTTTGTAATGGGCCCTTCACATCTCTGGT
TGACCGGCCCTCGCCTTCGCAACTGTTGATGGTTCATAGTAAGACCAATA
ACTTGCTGCAGCAGCAATAGACGAGATCGGAAAATGAGTCGTGTTGCGAG
TCAGACACGGTGTCACAGAAACCAAAACTAAAAAATTCACCGCGAAGGCA
CACACTTCCACCCGTGTGCCGATATGGTGCGATGGCTATTAGAATTTGAT
TTACAGTAGTTCGTGCATACTACCCATGTCGGATAATTGTTTTCGTCGGA
ACGAGGAATAATCCACAAAACGAAATCTTTCCTTTGGCTTTCATATGATC
CATTCATATCCACGGAAGCTACGTACTACTAGGATGTATGGCTCGTCAAA
CTTGACGATGAATGCGCATGGGACAGAGAGCTAGTATTGTACGATTGCTG
TTGCAGCAAAGATCGCCGAATATTTCACGCGGTAAAAACGAACCTCTGCT
TACTCACGTGCGTATCTTCACTCAACGGAATTTTCCCGCAGAGAGGAGAG
TAAGGCTATCAAGAGAACCCAGGGGAAACACATTCGAGCCAAAGTCCTGG
AATCTATGCAACAGGTATTCGATTGACCTGACGCACTTCATTTACCGTAC
TTATGAGAGTTTTCGAAATGATGCTCACAATGCGATTGTCGCCTGGCTTG
CACAACTGTCTGCTGGTAGGTGGATGAAACTTGGAAACAGAGGAGATCGT
TAATAGTCTTCGCGAGTGGGAGGCAATTTTTTCAGTTTTCAGGGATCGCG
ACGTTACTAGGACAGAAGAAATGTAGCAAGAACGACCATGTTTGGTATTT
TACAATGCGCGCCAAGTGGGGTGTGTAGATGCTCGTTTGTTTGTTTTTGT
CTATCAACCGCTTTTATTTAGTTTCTGTGGGGACATATAATTCAACCACG
TGGCAGTTCCACAGCGCCGAATAAAGTCAGAAACTATTTATGCGTATATC
CAGTCGACCTAAAGCACGAAGTGCTCAAGAGCAAGGAAATGCTAAAATGG
CCGTCCTATAGTGCTCCATAGAGTAAACCTGCTATCATTACTGTAGAAGA
AGCGTCTGGATTTTGGTGGATTAATTATCGTAACGTATACGATACTTGGG
TATTTCCTTCGCTGACGGCATTTCAAAGCCAAGCGTCTCGAAACGTACGG
TGCAGGTGACCCTGGAAGCCACGTCGTTCGGAAGAAACCTCGGGGGAAAT
ATGTCATCAGATAGACGTACCCCGTCGACAGTCCAGGGTATTGTTTTTCG
ATGGAAAGATGTCGTGGATATCTGTGGACAACCCGCCTATCGGCAGGGAG
TCGTCGCGCAGCTTCTCGAGAGACTTAATTAAGTTTGAGCAAACTTATTA
CCCCTAGCAAGAGAAGAATACTTTGTGCGGCCGCTCTTATCGGCGTTCGA
GTTTTGGCGTATTCAAAACTAGATTTTCACAAGAACCGGATTTTCTCTAG
TAGTTATACAGCAAACGAAAAAGAATCAGGTGACCTCCAAAATCAAGTCT
GCGATGTCCATTGGAAACGTTCTGAGCTGCAGTGGTCCACTGGTCGAATC
TTTCCAGGCGAAATCGTTCGATGACCAGCTGGGCGCAGCTGGCCAGTGGG
GGATGTCCAAACGTACGGTTGAGCTGGCCAAGCTGGGCCTTGAAGATTGT
AAATCGGGGCAGGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2457:283..3948+

>mRNA_H-paniculata_contig2457.6660.1 ID=mRNA_H-paniculata_contig2457.6660.1|Name=mRNA_H-paniculata_contig2457.6660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig2457:283..3948+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTCAAAATACTTTTCAAGTCAAGAAGGGCTGCGAAACGCCAGAGAGAT
ATTGATGCTTGGCTTCATGAGTGAACAGGAGAGCGCGGAGGTTGCCGAGA
GACACACCTTAGACCTCACGCGAAGGCGCCGCTTGCGCAAGATGATAAAG
CACCGGAAACGCAACAAAGTACTCAAAATACTTTTCAAGTCAAGAAGGGC
TGCGAAACGCCAGAGAGATATTGATGCTTGGCTTCATGAGTGAACAGGAG
AGCGCGGAGGTTGCCGAGAGACACACCTTAGACCTCACGCGAAGGCGCCG
CTTGCGCAAGATGATAAAGCACCGGAAACGCAACAAAGAACGCAATAGGA
AGCAAAATGCGAGGCTGATCGCTACGGGAGCACGCCTGAAACTCGAAGGC
GTTGTTTATGTACAAGGCCATCGTTGGGCGCAATCCTCGGATTGGAATCG
CAAGCCAGGCACCCACCCGGACCAAATCGCCACAACGGGTCAAAGCTTGG
TCCAGGCGAACCGGGTATCATCGCCTGCTGCGAGGGATGTGGGGCCACTC
ACGAACGGTGTGGATGCCGTCGATACGCGCATTGCGCGAAATATGAAGGC
TTCCAGGGCGGCTATGTACGCCGAGGAAGAGCTGGTCAAACGGATGAAAC
ATCTGTTGGAAAACAGAACGCAATAGGAAGCAAAATGCGAGGCTGATCGC
TACGGGAGCACGCCTGAAACTCGAAGGCGTTGTTTATGTACAAGGCCATC
GTTGGGCGCAATCCTCGGATTGGAATCGCAAGCCAGGCACCCACCCGGAC
CAAATCGCCACAACGGGTCAAAGCTTGGTCCAGGCGAACCGGGTATCATC
GCCTGCTGCGAGGGATGTGGGGCCACTCACGAACGGTGTGGATGCCGTCG
ATACGCGCATTGCGCGAAATATGAAGGCTTCCAGGGCGGCTATGTACGCC
GAGGAAGAGCTGGTCAAACGGATGAAACATCTGTTGGAAAACAGAGAGGA
GAGTAAGGCTATCAAGAGAACCCAGGGGAAACACATTCGAGCCAAAGTCC
TGGAATCTATGCAACAGAGAGGAGAGTAAGGCTATCAAGAGAACCCAGGG
GAAACACATTCGAGCCAAAGTCCTGGAATCTATGCAACAGGCGAAATCGT
TCGATGACCAGCTGGGCGCAGCTGGCCAGTGGGGGATGTCCAAACGTACG
GTTGAGCTGGCCAAGCTGGGCCTTGAAGATTGTAAATCGGGGCAGGCAGC
GAAATCGTTCGATGACCAGCTGGGCGCAGCTGGCCAGTGGGGGATGTCCA
AACGTACGGTTGAGCTGGCCAAGCTGGGCCTTGAAGATTGTAAATCGGGG
CAGGCA
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