mRNA_H-paniculata_contig2455.6655.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE) HSP 1 Score: 163 bits (413), Expect = 3.880e-43 Identity = 83/204 (40.69%), Postives = 115/204 (56.37%), Query Frame = 3
Query: 807 GMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPNMDCAGPDGLLDAWLHEDRTMNFGTNGRNSNGPPERVEVENGFFAMRRRPGTHYTYRVENNEVAWL 1418
G G+ NDKSI+ +D V +RE Y + + + DG K L+VD Y++W L ++ + ++A+ KRLESVRKDV CFFGI+KG FRIL L I + + +DNV +TCCILHNMLHS+D E + AG GL +AW H + S+ E VEVE+GF R++ + YR N++AWL
Sbjct: 37 GFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 240
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.120e-41 Identity = 84/204 (41.18%), Postives = 116/204 (56.86%), Query Frame = 3
Query: 807 GMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPNMDCAGPDGLLDAWLHEDRTMNFGTNGRNSNGPPERVEVENGFFAMRRRPGTHYTYRVENNEVAWL 1418
G G+ NDKSI+ +D V +RE Y + + + DG K L+VD Y++W L ++ + ++A+ KRLESVRKDV CFFGI+KGRFRIL L I + + +DNV +TCCILHNMLHS+D E + AG GL +AW H + S+ E VEVE+GF R++ + YR N++AWL
Sbjct: 278 GFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 481
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 163 bits (412), Expect = 3.370e-41 Identity = 95/215 (44.19%), Postives = 126/215 (58.60%), Query Frame = 3
Query: 783 GGYLG*RKGMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFD--GLKLHEPNMDCAGPDGLLDAWLHEDRTMNFGTNGRNSNGPPERVEVENGFFAMRRRPGTHYTYRVENN-EVAWL 1418
G L +G GA NDK+I+ +DK V +R Y YKL +DG + EK L+VD Y++WR L ++ R ++ + KRLES RKDV C+FGILKGRFRI L I F + +DNV +TCCILHNMLHSFD G EPN AG GL +A D ++ + G + +G E VEVE GF A+R + T++ YR E ++ WL
Sbjct: 195 GRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNW--AGSAGLHNA-ADRDPNTDYSSVG-SMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 405
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.890e-40 Identity = 95/215 (44.19%), Postives = 126/215 (58.60%), Query Frame = 3
Query: 783 GGYLG*RKGMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFD--GLKLHEPNMDCAGPDGLLDAWLHEDRTMNFGTNGRNSNGPPERVEVENGFFAMRRRPGTHYTYRVENN-EVAWL 1418
G L +G GA NDK+I+ +DK V +R Y YKL +DG + EK L+VD Y++WR L ++ R ++ + KRLES RKDV C+FGILKGRFRI L I F + +DNV +TCCILHNMLHSFD G EPN AG GL +A D ++ + G + +G E VEVE GF A+R + T++ YR E ++ WL
Sbjct: 286 GRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNW--AGSAGLHNA-ADRDPNTDYSSVG-SMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 496
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE) HSP 1 Score: 154 bits (388), Expect = 2.300e-39 Identity = 83/225 (36.89%), Postives = 119/225 (52.89%), Query Frame = 3
Query: 783 GGYLG*RKGMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPNMDCAGPDGLLDAWLHEDRT--MNFGTNG-----------RNSNGPPERVEVENGFFAMRRRPGTHYTYRVENNEVAWL 1418
G L G GA NDK+I+ +D V +R Y YKLR +G E+ + LI+D Y+ W L ++ + ++ A+ + LESVRKDV CFFGILKGRFRIL L + + + +DN+ +TCCILHNMLH+FDGL + + N D G G DAW H+ T + G+ G G R E ++R+ + +R + N++ WL
Sbjct: 29 GRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLLPKEGEEEECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWL 253
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.370e-37 Identity = 85/218 (38.99%), Postives = 122/218 (55.96%), Query Frame = 3
Query: 804 KGMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPNMDCAGPDGLLD-----------AWLHEDRTMNFGTNGRNSNGPPERVEVENGFFAMRRRPGTHYTYRVENNEVAWLGS 1424
+G GA NDK+I+ FDK AVR G Y+ + Y L+ +DG + EK LIVDG Y+ W+ L + + E + ++LESVRKD C FG++KGRFRI + ++R+ ++DN+ +TC ILHNML ++DG++L EP+ D AG DG LD A HED VE ++GF A+R++ T++ YR V W S
Sbjct: 253 RGFPGAQNDKTIIKFDKFAMAVRNGW-YKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVRMSAPTHEDAV----------------VECDDGFDALRQKLVTNFAYRWGQGTVGWKRS 453
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 142 bits (359), Expect = 7.000e-35 Identity = 73/209 (34.93%), Postives = 117/209 (55.98%), Query Frame = 3
Query: 804 KGMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPNMDCAGPDGLLDAWLHEDRTMNFGTNGRNSNGPPERVEVENGFFAMRRRPGTHYTYRVENNEVAWLGSQS 1430
+G G+ NDK+ VC+D V+ +R + Y + + ++DG K ++VD Y++W+ L ++ + ++ + KRLESVRKDV CFFGILKGR RIL L + F+ ++DNV +TCCILHNMLH+FDG+ N + G+ + E + ++ NG P+ VE G +R+ T + YR ++ + G+ +
Sbjct: 79 EGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGTKDVNGRPQ---VEAGHAVRKRQLTTSFAYRKKHKKDIVYGNST 284
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 146 bits (369), Expect = 8.120e-35 Identity = 77/213 (36.15%), Postives = 122/213 (57.28%), Query Frame = 3
Query: 783 GGYLG*RKGMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPNMDCAGPDGLLDAWLHEDRTMNFGTNGRNSNGPPERVEVENGFFAMRRRPGTHYTYRVENN-EVAWL 1418
G L +G G+ NDK+I+C D+ V +R + Y + + KDG + K LIVD Y++WR L ++ + ++ + KRLESVRKDV CFFGILK RFRIL L + +++ ++D V +TCCILHNMLH+ DG+ E +++ G L + H + + GT N ++ +VE ++R+ T++ YR ++ ++ WL
Sbjct: 241 GRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNLDSSSVGTKDLN-----DKPQVEAAHAELKRKLTTNFLYRKKHKKDIVWL 448
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE) HSP 1 Score: 146 bits (368), Expect = 9.280e-35 Identity = 74/158 (46.84%), Postives = 105/158 (66.46%), Query Frame = 3
Query: 792 LG*RKGMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPNMDCAGPDGLLDAWL 1265
LG K GA+NDK+IV FD+ V+ ++ + + + L +DG E E+ L LIVDG Y++ C + ++E+A+ K+LESVRKD+ CFFGILKGRFRIL +P+++R ++D + TCC LHNMLHS+DGL L E + + AG DG LD W+
Sbjct: 247 LGVSKAFPGAMNDKTIVMFDEYVRRIKT--ECKDVPFTLLGEDGSEFEERGLYLIVDGGYHK-----CPVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYRGIHKLDCIFQTCCALHNMLHSYDGLSLLEKDCEWAGADGDLDPWV 397
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.210e-34 Identity = 75/208 (36.06%), Postives = 117/208 (56.25%), Query Frame = 3
Query: 804 KGMAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVDGEYYRWRNLACRAEEVAAREEIAWIKRLESVRKDVGCFFGILKGRFRILNLPIVFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPNMDCAGPDGLLDAWLHEDRTM--NFGTNGRNSNGPPERVEVENGFFAMRRRPGTHYTYRVENN-EVAWL 1418
+G G+ NDK+IVC+D V +R + Y + L ++DG K + D Y++W+ L ++ + +++ + KRLESVRKDV CFFGILKGRFRIL L + ++ ++DNV +TCCILHNMLH+FDG+ N + G+ E +FGT N ++ ++E G +R+ T + YR ++ ++ WL
Sbjct: 124 EGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVN-----DQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWL 326 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2455.6655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2455.6655.1 >prot_H-paniculata_contig2455.6655.1 ID=prot_H-paniculata_contig2455.6655.1|Name=mRNA_H-paniculata_contig2455.6655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp MAGAVNDKSIVCFDKTVQAVREGEPYRSMAYKLRDKDGVEQVEKSLCLIVback to top mRNA from alignment at H-paniculata_contig2455:16179..19495+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2455.6655.1 ID=mRNA_H-paniculata_contig2455.6655.1|Name=mRNA_H-paniculata_contig2455.6655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3317bp|location=Sequence derived from alignment at H-paniculata_contig2455:16179..19495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2455:16179..19495+ >mRNA_H-paniculata_contig2455.6655.1 ID=mRNA_H-paniculata_contig2455.6655.1|Name=mRNA_H-paniculata_contig2455.6655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig2455:16179..19495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |