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Homology
BLAST of mRNA_H-paniculata_contig2454.6651.1 vs. uniprot
Match: A0A6H5JR94_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR94_9PHAE) HSP 1 Score: 110 bits (274), Expect = 3.220e-24 Identity = 66/133 (49.62%), Postives = 84/133 (63.16%), Query Frame = 3
Query: 75 MGCAGSKGDDG--RRNRRLHEIFSVPSPRLSEADQKLTASLKALKLQMDEEQNVSEAFSFTKIILKLGTIERVLKRVKAVFRSVDHGNKGHVTMQELKEGLLKAKV------KRTMANDCLVARFKVDNGFGL 449
MGC GSK + + R++ F P+P + A ++L L+ LK QMDEE E+FSFTKIILKLGTIE++L R+ AVF+SVDHGNKGHVT ELKEGL +A V + T +DCL D+ GL
Sbjct: 1 MGCHGSKEETPTCQAPRKMWRSFPPPTP--TSAQRRLIEGLQDLKRQMDEESGGKESFSFTKIILKLGTIEKILHRINAVFQSVDHGNKGHVTKDELKEGLRRAHVDLGDEWEDTNIDDCLQHLHGRDDKVGL 131
BLAST of mRNA_H-paniculata_contig2454.6651.1 vs. uniprot
Match: D8LMR6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR6_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.400e-23 Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 3
Query: 75 MGCAGSKGDDG--RRNRRLHEIFSVPSPRLSEADQKLTASLKALKLQMDEEQNVSEAFSFTKIILKLGTIERVLKRVKAVFRSVDHGNKGHVTMQELKEGLLKAKV------KRTMANDCLVARFKVDNGFGL 449
MGC GSK + + R++ F +P S A ++L L+ LK QM EE E+FSFTKIILKLGTIE++L+R+ AVF+SVDHGNKGHVT ELKEGL +A V + T +DCL D+ GL
Sbjct: 1 MGCHGSKEETPTCQAPRKMWRSFPPSTP--SSAQRRLIEGLQDLKRQMAEESGEKESFSFTKIILKLGTIEKILQRINAVFKSVDHGNKGHVTKDELKEGLHRAHVDLGDEWEDTNIDDCLQHLQGRDDKVGL 131
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 702 |
| Cds size | 483 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2454.6651.1 >prot_H-paniculata_contig2454.6651.1 ID=prot_H-paniculata_contig2454.6651.1|Name=mRNA_H-paniculata_contig2454.6651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MGCAGSKGDDGRRNRRLHEIFSVPSPRLSEADQKLTASLKALKLQMDEEQ NVSEAFSFTKIILKLGTIERVLKRVKAVFRSVDHGNKGHVTMQELKEGLL KAKVKRTMANDCLVARFKVDNGFGLLRIAMFSWIKVQVLFLSPTYCRFSM RSLKGYKIPG* back to topmRNA from alignment at H-paniculata_contig2454:7740..14049- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2454.6651.1 ID=mRNA_H-paniculata_contig2454.6651.1|Name=mRNA_H-paniculata_contig2454.6651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6310bp|location=Sequence derived from alignment at H-paniculata_contig2454:7740..14049- (Halopteris paniculata Hal_grac_a_UBK monoicous) GTTCACACAGTAGTTGCAGTGTGACTGAGGCTGTGGTTCCCTCTCTTTGA
GTCCTCATTTGAAGAAGCTTATGTATGGGGTGCGCTGGGAGCAAAGGAGA
CGATGGCCGTCGGAACAGGAGGCTGCATGAGATTTTCTCAGTACCTTCAC
CTGTGAGTTCGAGTGAAAACGCTACCCTTTCCGTCGGTTTTAAATCGTAA
TATATATGATGCGCATATAAATAAATTTCTCCTTTTAATGGGATGATGCA
CCATGCGCATCGCATCGGGACACATGCCGAGATTTTTCTCAAGACTCACA
CCGACAGACAGTACGACGCTTTCGAAGGGTATGTTTGTAGCAAAGTTGTG
GTCGGCGGAGCAAACGCGCACCCTCAACTACGGACGTGTATGCAGGAGAA
TGGAACGTTGACAGACAGCACAGTTATTACGGTTAATTCGTTCAGTCGTG
CCTGTAGACAGACGTCGCTCTCAAGTTTCTGACCTCTTGTCAAACCTGTC
AGTCCTATCATGTACGGTAGGTATGCCCAACAAAGTAACGAACCGGACAG
CAGTCCTTAGAAGCGGTAAGTGGTGTGTTAGCATCTCCGCTTACAAATCT
CTCTGCAAACTTCCAGGGATCACAGTAGACATCGTAGACTGCTGTCACTG
CACTTCACCGTCCTGTCGTATTAGACTTGTCTACCGCACATGCCTCCGCA
CAGATTCTCGCCAGTGCGGCCCAGCGCATGAAAAACGATGGTGTATCTAT
TGAGTGATACTTTCCATGCTTCTCTAAAAGTCGCTGATACTCTAACATGC
ACCCTTGTACGTTCTTGGCACTTGGTACACTAATAACATCGATCGGAGGT
AAGAGGGAGGAATTGCTATCCCCCGTGTATGTATATATTCGCCTGAAAAT
TGTGCCATTTACAATTCATTTAATCGAAGATTCATCGGTAATTCCCCGTG
CACGCGCCGAATCACGGAGCGTATTCGTGTGCTGTGTTGGTGCATAATTC
ACTGGATAGTTTCTAGATTAGAGATCTACCGTACTAAATTCTAGGTGTAA
TGGAGTTGGATGTGAAAGTGATTCATAGCACAGTAATTGCGGATAAACCG
GTCGGTTATTTGCGCATCTCTCTGCTGTTGTTGGTGTGTTTGATTGCGCT
GTCTCGAATGCTGGTTGATCGCTCCAGAATTTGACTTTTTTTTTTTTTGT
ACCGCGTGGGGTTTCTGTACAAGCGTGTAAGTAGTTAGTTCCTGGCAGCC
ACTAAAGATGAACGACGCAATTCAATGCAATTTGATATTGAAATCCGTGT
CAACTTTTTTCAATTCCACCGCATATATATACATTACCATGGTGATGCGA
AAATACTATTCCGAAAGTCAAGTTTCGGAGCACTCGGAGCGTTCCTTGGA
ACATTTGTTTCCCTGCAAAAGGGTACCCGTTGGCGGATTTGCATATTCTC
GAGAGGCGAGAACCCGGTGAGGTCTGGTCGTCGAAGTAGTCCGCCGATAT
AAAACACTGACCTCTTCGAGATCGCTTTCAGCGACAGCAATTTTCAGGGG
TACTAATACAGTAATGACGCTGTTGTCACATAAATCAGCATATAATTTCA
ACCTTCGGACGAATGCAACAATTTGGAACATTCGCAACGATCTTTTTTTT
TCTCAAGGGTTGAACCAGGATTTCTGAACATGTAAGCATACAGGATAATG
AGGTGTTTAACACACCCGACGGTACAGCTCGTGATCCGTTCGATGCGCAT
CATCGAACGTATGATTCCTAGTGAGCCGTGCACGCCATATGATGCGTACA
TGTTTGTCCACGGGTGACATGTAACCTACACATCACTAGCACATGGTTGT
TGATGGGTGGTGCGTAGGATACGGAATGTACAGGTCATGAGCTGTGAGAT
TTGTAGAGTATTTACCCCCTGTGTATCCATGTTGCTATTATTCTGAGCAG
TGGTAGATGATGCGGGGCACATAAAATAAACATGATCACGGTGAACCCTT
CGGCGAAGACTTTTTTCATGCTCGTCTGAAGGGCCGTTCTAAACGTGGGT
GTTTTTCTCCCCCCTACCTTCATCCGCCCCCCCTCCTTGTTTTTTATTTT
ATTTTACCGATAGTACGTTGAGATTATGTATGAAGAGTCGAAAAAACCTT
GAAACATGGTTGTGGAACGCTGGAGGCAAAAATGCTAACTTTTATTTCGT
GGGATTTCGAAAATTTTAGAAGTAAACTAAAGAAATTAGGGAGACCAAAA
AAAAAAAACGGGGAAAAAAAATGAAATCTTACATCTGTGGAGTTGAACAT
GTTACACCTTGGGTTTACCGCTTCCTATCTGTCTTGAGTCATCTGTTACT
GACGGTAAGTTTCGCCGGTGCATTGGTTCCCTTCCTTCAAGTTAGACCGA
GGCTTGAATTGTTCAAGACAGTACAATCAGACAGCGGACAGTGGACAACA
CGGACGGTCGCGGGAACAAAAAAATAGGAATAACAGAAAACCCCTTTTCA
TTTGCGCTGTAATTTAATTCAATATTTAATGGCGCCCCTCGGATCCTGTT
TATCCTCCCCGTTTACCAAAAAACACAACACACATCCCCAAATCTTCAAA
ACGAAAAAAAAAATCGCGTGCTCGTGTCCGGAAAAAATAACATTTTTTTC
AAGATTTGAGAGATTTACAAAATGTGCGCAGAAGAAACGCTGAGGTAAGT
TTTTGTGCTCGTCGTTCTTGCCGATCAAAATGTGAATAACGCTGTTATAG
CCCTTCGCGCCGTCTTGAGACGTCATTTATCACGTAGAGTACTAGATTGT
TGGCTCCAAGCCACAGGTTTACTGGGCGAAAAACTAATTGAAATTTTGGA
GACAATGCGTGCAAAACTGTTCCGAAATTACAATCACCTAACGGCCCACC
TCATACCGTACTATATTGTCATCATCCATTTGGTCCTTATCCGCATGTGT
CAATGGTTTGAAGAACTGTGTAACTGTACTTTCGTATAGCAATTGACTGC
TTCCTTCCTACAGTATTGCATAAAACGATCTGGTTTCTGTCGCTGTCGGG
AACACTTTTTGTTCCTCCTAACAGTCTCTAGAGATATACTCCTCCAAATC
GTATTTTTCTTTTTTGGTCATGAAGTCGGAGGCCTACCGACCACCGCCAC
TATGTTGCCCAGTACGAAAGCTAAGATTATCGAAATATTTTTCGATTTTC
TGAGCGCGGTTGAAACAAATTCGCGAAGACTTGTCTGACTGCCGTATGAT
GCGGCTGCAGCACAATAGCCCCTGTGGGGTTGGAAAATGACCGCAGACGA
AAGGGCGGGGGCGTACGTACTTATGTTTTGCGTGTCGTAGTTATTAAACC
CTTGACCACGTGTCCTCGGAGGAGAGCTTTGTTCCTATCAGAGCGACTTC
CCGATGGCCAATCGCTCTTTCCTACTTGTCTTATTTGTGGCTCACAAATG
TTTCACCAGTTCTATTCACCTCAACCCTGTCGTCTTCAGGCCATTTTCTA
TCTCCTAGAATCGCTATAGTTATCTTTTCGCTATCCCAGAGTTCAAGCTC
CTCTTCATGGTATCCTTCGATTTTTCTTCATTTACTCGAAGAGAAGGAAG
GACAAACTCATGTACACACAAGGGGGAACGTGCAATAAAGCGAAGTTGGC
ACCACAATCATAGCTCCAAGGAATCCGCCCCCTTTATCTATTCCACCGAT
GTACCCCTGTATTGCTACTACATCAGCGCTTGTCTGAGGCGGACCAGAAG
CTAACCGCGTCTCTCAAGGCGCTAAAGCTGCAGATGGACGAGGAGCAAAA
TGTATCGGAGGCGTTTTCTTTCACGAAGATCATCCTCAAGCTTGGGACCA
TCGAGCGCGTACTTAAAAGGGTGAAGGTGCGTGTGTTCTGTTTGTAAATA
CTAGTAACGGTATACAGACTTACCCGGTACTTTTCGAAATATCATTGAAG
ACTTACATCCGATTCGGGGTTGTAATTCAACGGTTTTTCTGGCGTTCCAA
AGGAGTGAGTGCCGAAAAGCAGATATGGGTTCTCAAAAACAAACCTCATA
AAGCAGGTGATCTCAGAGGGTCACGTCCCAAAAAAGGCTTACCACGAACT
CAACACACTTGACACACTTTTGTTGCCATTTTTTGCCAAAGGTTACACGT
TTCTTTTCTTACCAGGTACTAATTTTGGTTTTCGAGAGATGTAGGCGGTA
GGTACACCTAGCCCCTGCACGAGCACGGGTACGAATCCCCCCCCCCCCCC
TACACACTTACACTCACACTCACACACATACACACACACACATACACACA
CACACATACACTCACACACACACACACACACACACACTCACACTCACACA
CACACATACACTTTTTTTGTTGTTAGCAGCATCGTGTTTCCCGGCCATGT
TTAGGCCAATTGCAGACGTTTCCGAGATCCGATTTGACACCTTCACCACA
TGCTGAACACTGTCAAAAGCTGGAGGTCTCGTCCCAAGGGTAGGGGTTAG
GGGTAGCATTGGAGTAAGGCAGACATATGGCCCCCATCACGCGGAGTCGC
TCCAACCCGAAACGGAGCGTGGATATTTGCAATAAACCAGGAAGAGGAGG
AGAAGTGGAAGTAGTCCTCGTTGGTTCTTCACCTCGCGTGAGTTTTCATG
TGTTTGCGATGCCCGTATTATATCGTCATAGTATGTATATAACCCTTTCC
CGGCGAAGGGGAAGGTGGGGAGGGGGAGCGCCTGCGTCTGTATTGCGTGG
GTTCATCACCATTGAGGGAATAAATGTTTTTTTTTTGTGGGATGAGGTGC
TTTTGGTGTACGATTACTTCAGCAGTAAATAGCTCCAATGTGCCGTGGTC
AGAAGGATTTAATTGTTTAATTAATAAAATGTGCATGACATTTTTTGTTT
TCAAAAGAGAAGATTACCTCACGCAGGATGTCAGCGTTCACGTACTCGAT
ATTTTTGTATGATACGCGGCCAATGACGGGTATTTTCATGTGGGGCATGC
ATCTTGTGTGTATGTCGACTCAGTGATGGTCAAATGTGAAAAAGAAAGAA
AGAAAAGAAATCGATGGATTCGCCGATCGGGCAGCTAATTTGTTTTTTTT
TTTAAACCCGGAAGGCTAAGGCAAAAGCCTTATCTGATGCTTCCATACTT
AAGTATTTCTACCGAAGTATTCAGGAAGCTAGGTTCCCTCTTCCACACCT
TGAAAACGCTTTTGACAAGCATGTGCGTTAGAGTCGTCTCAATACAGAGT
GGAGAGTGGGGTCAATTTTGGAGGATGACGGCTCTCATGAGAGACTGGCT
ACACAGTCAAACTGTCTTGACTTGACCATGTCAACCCTGCTGTTGATATT
GTATTTTTGTGTATTGTTCCCGATTCTTCCTGACTTTCCGTTTGTTTCCT
GTAGTCGTTTGCTTGCTTTCGTGTACAGCTGCTTCCTACCCTGGAGAGGG
GATAGGTAGCTGGGTAGGTGGGTACCCTTGTCACAAAAGGGGATACACCC
TATTGTAGGACAAGATGTTCGAGGATGACACCTTTGAGGGTGGCGCTTTT
AGAGCATGGTGCTGTTGTGAGTGACGATATAATCACATCTATCAGCATCG
TGTCAAGCTGAGCTATCTAGACGGTACAATTCGGACATGTCCTTGTGTAG
AGGCGTTTGCTAGATTTGTTTCTGAATGTCGATGAGAAGGTAATGTATAA
TATATATATATACTATTTATTATAGTTGGAACGAGTCCTTGCACCAAAGG
AGGGGGTCGGCAATCAACCCCTACTGTTCACGTAAGTAGTAATATGTTAC
AGCAAAATTTGTCCCTGCGAGATGTATCATCTTCATTTCTTCCTCTTTTT
TTTCGTCACGTATAAGAAACATTTTCCCTTGTTGCTGGATCGGCGCGGTC
TGTAACGCAGGCCGTGTTTCGGAGTGTCGATCACGGAAACAAGGGTCACG
TGACGATGCAGGAGCTGAAGGAAGGTCTTCTTAAGGCGAAGGTGAAGAGA
ACAATGGCTAATGACTGTTTAGTCGCTCGATTCAAGGTAGATAATGGCTT
CGGGCTCTTGAGAATTGCCATGTTCAGTTGGATAAAGGTTCAAGTCTTGT
TCCTATCTCCAACGTATTGTCGTTTCTCGATGCGATCGCTCAAAGGATAC
AAGATCCCAGGATAGAGCCAGCCTAAAAGTCGGTCTTTTGGAGAAAAATT
ACAGTGCTGTGCGTGGCGACATAAAACATTCGATACCGGCAGCGCAGGTC
GACTCGATTCTTATTTAGTGCTTCTTGTTTCGTCCTGTTCGTGAAAAACC
TTTTCCTGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig2454:7740..14049- >mRNA_H-paniculata_contig2454.6651.1 ID=mRNA_H-paniculata_contig2454.6651.1|Name=mRNA_H-paniculata_contig2454.6651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig2454:7740..14049- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGGTGCGCTGGGAGCAAAGGAGACGATGGCCGTCGGAACAGGAGGCT GCATGAGATTTTCTCAGTACCTTCACCTATGGGGTGCGCTGGGAGCAAAG GAGACGATGGCCGTCGGAACAGGAGGCTGCATGAGATTTTCTCAGTACCT TCACCTCGCTTGTCTGAGGCGGACCAGAAGCTAACCGCGTCTCTCAAGGC GCTAAAGCTGCAGATGGACGAGGAGCAAAATGTATCGGAGGCGTTTTCTT TCACGAAGATCATCCTCAAGCTTGGGACCATCGAGCGCGTACTTAAAAGG GTGAAGCGCTTGTCTGAGGCGGACCAGAAGCTAACCGCGTCTCTCAAGGC GCTAAAGCTGCAGATGGACGAGGAGCAAAATGTATCGGAGGCGTTTTCTT TCACGAAGATCATCCTCAAGCTTGGGACCATCGAGCGCGTACTTAAAAGG GTGAAGGCCGTGTTTCGGAGTGTCGATCACGGAAACAAGGGTCACGTGAC GATGCAGGAGCTGAAGGAAGGTCTTCTTAAGGCGAAGGTGAAGAGAACAA TGGCTAATGACTGTTTAGTCGCTCGATTCAAGGTAGATAATGGCTTCGGG CTCTTGAGAATTGCCATGTTCAGTTGGATAAAGGTTCAAGTCTTGTTCCT ATCTCCAACGTATTGTCGTTTCTCGATGCGATCGCTCAAAGGATACAAGA TCCCAGGATAGGCCGTGTTTCGGAGTGTCGATCACGGAAACAAGGGTCAC GTGACGATGCAGGAGCTGAAGGAAGGTCTTCTTAAGGCGAAGGTGAAGAG AACAATGGCTAATGACTGTTTAGTCGCTCGATTCAAGGTAGATAATGGCT TCGGGCTCTTGAGAATTGCCATGTTCAGTTGGATAAAGGTTCAAGTCTTG TTCCTATCTCCAACGTATTGTCGTTTCTCGATGCGATCGCTCAAAGGATA CAAGATCCCAGGATAG back to top
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