mRNA_H-paniculata_contig2453.6650.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2453.6650.1 vs. uniprot
Match: D8LEV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV7_ECTSI) HSP 1 Score: 357 bits (916), Expect = 1.610e-99 Identity = 346/1070 (32.34%), Postives = 447/1070 (41.78%), Query Frame = 3
Query: 99 EGRAGANIDAGDVDEDAALAFAGMGGIEIGGVGGANAASVMWSVDMLFSQWFVDTDLIRLVFREKWNGAYE---------ELTLSYMLRRYAGVQSYVIPFDPTLPDYRSDVGVDSPEARKAAQRTAAAMAGASLPTHPFGARQNKNNRGGFINRPPPPLEKREGHTANRTGKEPNSREPKRRRLKSAPGAEAANGGERAKVEVIVGGEAGVGSEFERGERDRFDGERRKL-EEGSYSGSNSSVDGHPLSSSNAGTAVVDKRGLAGSYTLAKNGDHPDEDRGDKAASPAYTLPSVLMSALRESGFRDQFTELAGRGGRWFWTPAQCSAEVVLLVVDGARQARLLEPLYRKFSQG------TDAEVFFAVITGG------------KELTRLGRLSNAAVDNRTHCLNVATALGLSQSSTTIENGGVVDDTXXXXXXXXXXXXXXXXXXXXXXXGEKMSDVANSFNMKRTRTPNGNNNPELSAAGMLRGXXXXXXXXXXQRGLHRNNKRMLSQTIVGGAASKMVPPRRLRQIEVSAIDAAGELESAAGADAGTGAGEKKSGQRGENRWLMLERKTSEFLGLGARHGGRGRN-RISTPEEFCDGDTFGVFKIRIGQDFSRGTGRPMDPFLDVYHSLTELLTHVEPMMVAYISPDNGESHGIAGSTAALTRGGG---------------VGDNVVVAAVEAAVRSTG---AARHPVALPLPA-TVDGAKAAKEIAYLPKGCMEQWGQPRIVLALVHPREAAAEMLSRTLRALQHAHYVGDSVELRLALHGSAIDDKEVQELLSKLKWTAGPLVVSYFYDAPGGMI----------ATQHIAALEAFSDAGVHNHVIPLFSGALPSLEFYVQLKVALINEGYAPKPFIGQPLTQSE-RNGFRLVQKRPDTDEDASSGSDNLTRPSIAGEFVKPSSTEGTDKKDEMTEEAWGSSLSLSVHSPEGMCASPS----AECSRVWMYGSVAWSALRNRCR--LAVVGGAVVAGETNP--DVEAVDVGCAVGIGATAGEERGGGVLLQKHVCGVWPPGAQRWSITQRRPEVPPRVVVWEV 3107
E AGA D DE +A G+GG + G A SV+ D+LFSQWF+ DLIRL+FREKW G L LSY LRRYAGV SYV+P DP LP+Y ++ P + Q + A AEAA + G A F R RD D RR+L +G+ + S L S A + + R L A G RGD SP S L+ L E R QF +L+ RGG++F T ++VL+VVDG QA LL PLYR+ +G AEVF +IT G ++ LG R C VA ALG+S S T + G +++ N R++T GN G + PR L ++ GE K G GE RW L R +LG A+ R+ R TPEEFC G FGVF +R+GQD+ + GRP+DPFL+VYH L+E+L P +VAYI D H + S A + G + VV AVEAAVRS G + P+ +PLP GA+AAK +AYLP G +E+W +P I L LVH A MLSR+L AL A+YVGDSVELRL L A+ D + +++ +W G L V+Y + P G I +AALEAF G H+H+IP+FSGA P FY LKVA++NEGYAP+P G PL + L + + + G +L R + ++ WG L+LSV P+G C A CSR+WMYGS AW ALR RCR LAV G GE +++ ++V CAVG A G++ G L HVCG P G W R VWEV
Sbjct: 286 EAAAGAPRIPVDGDEGGGVAL-GLGGAAVSGT----AVSVLSPADVLFSQWFLHKDLIRLLFREKWAGVASGNGGKGGPAALALSYSLRRYAGVPSYVLPSDPALPEYSGNMSAGLPPGKLDIQGISKA-------------------------------------------------------------AEAA---------AVAAGFARRKKTFRRRTRDAPDQSRRRLARDGAVAASXXXXXXXXLGSL-ASPSDRNSRALQ----AASGGRGDASARGDTDGSP-----SSLVRRLDEPQLRAQFRDLSARGGQFFRTADHSPEDLVLIVVDGRDQAELLGPLYRQIVEGGXXXXXXXAEVFIVLITHGPDSVGDETSPQQQQQEALGA-PPVRTTARRDCREVAEALGVSPSKTPADGG------------------------------------SSNNNAGRSKTGGGN----------------------------------------GDMNHLIQRPRGLGEVF----------------------GEGKGG--GETRWDQLTR----WLGGKAQGSDEMRSHRFLTPEEFCLGHAFGVFHVRVGQDYRQAAGRPLDPFLEVYHGLSEVLQLTAPKIVAYI--DAPHEHEVLPSGEAKKKKKGRPTALDAMLAAPSDYAPEETVVRAVEAAVRSAGGGGSTPRPIGMPLPGGAAAGAEAAKVLAYLPGGSLERWKKPAITLVLVHSTREPATMLSRSLWALSEAYYVGDSVELRLVLDPRAVGDPMIDKIVRDFEWKWGNLDVTYSSE-PFGTINGGSGGGDSELPAGLAALEAFGGPGKHSHIIPMFSGARPDPNFYAWLKVAVMNEGYAPRPVPGLPLESWPLQRSLGLGDGSKNYENNPPPGKGDLMRRRTPADVMQ----------------MWGKFLALSVDVPQGPCPDDDPGGPAGCSRMWMYGSEAWGALRERCRAGLAVAGAGEAGGERGRPGELQPLEVACAVGDVANRGDDWG---LEAVHVCGAGPRGDGEWQ----------RARVWEV 1133
BLAST of mRNA_H-paniculata_contig2453.6650.1 vs. uniprot
Match: A0A6H5KSC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC9_9PHAE) HSP 1 Score: 281 bits (719), Expect = 9.340e-74 Identity = 194/470 (41.28%), Postives = 244/470 (51.91%), Query Frame = 3
Query: 1794 TPEEFCDGDTFGVFKIRIGQDFSRGTGRPMDPFLDVYHSLTELLTHVEPMMVAYIS-------PDNGESHGIAGSTAALTRGGGVGD----NVVVAAVEAAVRSTGAAR---HPVALPLPA-TVDGAKAAKEIAYLPKGCMEQWGQPRIVLALVHPREAAAEMLSRTLRALQHAHYVGDSVELRLALHGSAIDDKEVQELLSKLKWTAGPLVVSYFYDA---------PGGMIATQHIAALEAFSDAGVHNHVIPLFSGALPSLEFYVQLKVALINEGYAPKPFIGQPLTQSERNGFRLVQKRPDTDEDASSGSDNLTRPSIAGEFVKPSSTEGTDKKDEMTEEAWGSSLSLSVHSPEGMCASPS----AECSRVWMYGSVAWSALRNRCR--LAVVG-GAVVAGETNPD-VEAVDVGCAVGIGATAGEERGGGVLLQKHVCGVWPPGAQRWSITQRRPEVPPRVVVWEV 3107
TPEEFC G FGVF +R+GQD+ + GRP+DPFL+VYH L+E+L P +VAYI P +GE TA D VV AVEAAVRS G A P+ +PLP GA+AAK +AYLP G +E+W +P I L LVH MLSR+LRAL A+YVGDSVELRL L A+ D + +++ + +W G L V+Y + G +AALEAF D G H+H+IP+FSGA P FY LKVAL+NEGYAP+P G PL E + D + + G +L R + ++ WG L+LSV P+G C A CSR+WMYGS AW ALR RCR LAV G G P +E ++V CAVG A G++ G L HVCG P G + W R VWEV
Sbjct: 785 TPEEFCLGHAFGVFHVRVGQDYRQAAGRPLDPFLEVYHGLSEVLQLTAPKIVAYIDAPHEHEVPPSGEKQKKGRPTALDAMLAAPSDFAPEETVVRAVEAAVRSAGGAGSTPRPIGMPLPGGAAAGAEAAKVLAYLPGGSLERWKKPVITLVLVHSIREPPTMLSRSLRALSEAYYVGDSVELRLVLDPRAVGDPMIDQIVREFEWKCGNLDVTYSSETFGTINEGGGGGDSELPAGLAALEAFGDPGKHSHIIPMFSGARPDPNFYAWLKVALMNEGYAPRPVPGLPL---ESWPLQRSLGLGDNENNPPLGKGDLMRSRTPADVMQ----------------MWGKFLALSVDVPQGPCLGDDPGAPAGCSRMWMYGSEAWGALRERCRAGLAVAGAGGXXXXRGRPGKLEPLEVACAVGDVAKRGDDWG---LEAVHVCGAGPRGDEEWQ----------RARVWEV 1222
BLAST of mRNA_H-paniculata_contig2453.6650.1 vs. uniprot
Match: D8LCA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA3_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 4.480e-5 Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 3
Query: 228 VDMLFSQWFVDTDLIRLVFREKWNGAY--EELTLSYMLRRYAGVQSYVIPFDPTLPDYRSDVGVD 416
VD+L S WFV+TD ++L+FREKW E+ L+Y LR++AGV+S+V+P D + +V VD
Sbjct: 39 VDLLCSHWFVETDWVKLLFREKWETPQTGEDYMLAYSLRKHAGVRSFVLPMDLGDSETWGNVDVD 103 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2453.6650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2453.6650.1 >prot_H-paniculata_contig2453.6650.1 ID=prot_H-paniculata_contig2453.6650.1|Name=mRNA_H-paniculata_contig2453.6650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1037bp MPAAPASSWSQAGFGPLVTPFAEWEGRAGANIDAGDVDEDAALAFAGMGGback to top mRNA from alignment at H-paniculata_contig2453:7760..20758- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2453.6650.1 ID=mRNA_H-paniculata_contig2453.6650.1|Name=mRNA_H-paniculata_contig2453.6650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12999bp|location=Sequence derived from alignment at H-paniculata_contig2453:7760..20758- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2453:7760..20758- >mRNA_H-paniculata_contig2453.6650.1 ID=mRNA_H-paniculata_contig2453.6650.1|Name=mRNA_H-paniculata_contig2453.6650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6222bp|location=Sequence derived from alignment at H-paniculata_contig2453:7760..20758- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |