mRNA_H-paniculata_contig24518.6646.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24518.6646.1
Unique NamemRNA_H-paniculata_contig24518.6646.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24518.6646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24518contigH-paniculata_contig24518:542..1810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002950.2
Exons3
Model size416
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24518.6646.1prot_H-paniculata_contig24518.6646.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24518 542..1797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.9421802-CDS-H-paniculata_contig24518:541..7461622929710.9421802-CDS-H-paniculata_contig24518:541..746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24518 542..746 -
1691480977.6267064-CDS-H-paniculata_contig24518:541..7461691480977.6267064-CDS-H-paniculata_contig24518:541..746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24518 542..746 -
1622929710.9581146-CDS-H-paniculata_contig24518:1244..13641622929710.9581146-CDS-H-paniculata_contig24518:1244..1364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24518 1245..1364 -
1691480977.6391501-CDS-H-paniculata_contig24518:1244..13641691480977.6391501-CDS-H-paniculata_contig24518:1244..1364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24518 1245..1364 -
1622929710.9721763-CDS-H-paniculata_contig24518:1720..17971622929710.9721763-CDS-H-paniculata_contig24518:1720..1797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24518 1721..1797 -
1691480977.6494455-CDS-H-paniculata_contig24518:1720..17971691480977.6494455-CDS-H-paniculata_contig24518:1720..1797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24518 1721..1797 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.9880397-UTR-H-paniculata_contig24518:1797..18101622929710.9880397-UTR-H-paniculata_contig24518:1797..1810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24518 1798..1810 -
1691480977.6600528-UTR-H-paniculata_contig24518:1797..18101691480977.6600528-UTR-H-paniculata_contig24518:1797..1810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24518 1798..1810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24518.6646.1

>prot_H-paniculata_contig24518.6646.1 ID=prot_H-paniculata_contig24518.6646.1|Name=mRNA_H-paniculata_contig24518.6646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MASPSSPAASSVSTTRSGRTNWWEDSDGDDDGTSSFVSMRDDVSDAGSVM
SGYTSVSAGGRMEGGRYNGQYNNRGGGGGFGSSASSYSSSSSARRPPSVR
SSSSRRPASVVGLTRSLEPRPPPLAKQRSEAAFA
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mRNA from alignment at H-paniculata_contig24518:542..1810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24518.6646.1 ID=mRNA_H-paniculata_contig24518.6646.1|Name=mRNA_H-paniculata_contig24518.6646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1269bp|location=Sequence derived from alignment at H-paniculata_contig24518:542..1810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTACTACGCTATGGCATCGCCGTCTTCGCCGGCGGCATCATCTGTTT
CCACCACACGGAGCGGACGGACCAATTGGTGGGAAGACAGGTGTGTGTAT
GAATTCGCGTTTTGTATTATGTATTTTTGTGTGAATTATGATGTATCATG
TATGTATGATGTATCAAGGATATTTTGCATTAATATATATATATATATAG
AGAGAGAGAGAGAGAGAAAGACAATGTTTTGTCGGTCGTTTTCAGAATGT
TGATATTTGCATATGAAATTCAAATCATCTTCACTTTCGTGTGTGTGTCT
GTGTGTCTGTGTAAAGCTGTTATTGTAGCTCGATGTGTTAGTCAGCAGTG
ATGGCCTAATCAAACACCACCAGGAAGCAGGCAACCCTCCGTCTGGTTTT
GCTTTCGTATGTTCATGTGCGTTCGTCTCTTCCCTGTTCCTCGCAGCGAC
GGTGACGACGACGGGACGAGCTCGTTCGTCAGCATGAGAGACGATGTGTC
CGACGCCGGGAGCGTGATGAGCGGATACACAAGCGTCAGCGCCGGAGGCC
GGATGGAGGGAGGGAGGTATGTGGACGCGCGCATGTGGATGTGCTTTCGC
GAGATTGTATAGGGTGTGTTTGTGTTTGCCGAGCAGCCGACGCTGTCGTG
TCTTCTTGCGTCATGTTTTATTTTTTTCATTCATGATGTGTGTAGTAGTA
CAGTAAAGCCCAGCCCGGCTGATTGTTGCAAGAGGCGTGGCCCATGTTTT
TATCGTGTTTTGTTTTTCATCGCTTACAGTGTAACAGTGTTTGTCCAGTT
TAGCCGGCCGAGTGCGTCACAAACGCAAATAAAGTTATTGCGTGGGTTGT
TTGCCACGTCCAAAGCCATATCTGCCTTTTGCTCTATGATGGCAGACAAA
GAGGAAACGGAGAAGGTTCTTCCCTGGTTCCATTTTGGCGTTGAGAATTA
TGCTGCCGTCCGGTTGTTGAAGCTATCCTTCATAAGAAGCGCATGTTAAT
TTTAAGCAAATTTCGACTTCCCCCCCCACGCCCCCCCCCCACGCCCCTCT
ATCGACCAAAAAAGGTACAACGGTCAATACAACAACAGAGGAGGGGGAGG
AGGATTCGGTTCGTCAGCTTCTTCCTACTCTTCGTCCTCGTCCGCAAGGA
GGCCGCCAAGCGTAAGGTCATCTTCCAGTCGCCGACCCGCCTCCGTCGTC
GGACTTACCCGATCGCTCGAGCCCAGACCCCCACCACTAGCGAAGCAACG
GTCAGAGGCGGCGTTTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig24518:542..1810-

>mRNA_H-paniculata_contig24518.6646.1 ID=mRNA_H-paniculata_contig24518.6646.1|Name=mRNA_H-paniculata_contig24518.6646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig24518:542..1810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCGCCGTCTTCGCCGGCGGCATCATCTGTTTCCACCACACGGAG
CGGACGGACCAATTGGTGGGAAGACAGATGGCATCGCCGTCTTCGCCGGC
GGCATCATCTGTTTCCACCACACGGAGCGGACGGACCAATTGGTGGGAAG
ACAGCGACGGTGACGACGACGGGACGAGCTCGTTCGTCAGCATGAGAGAC
GATGTGTCCGACGCCGGGAGCGTGATGAGCGGATACACAAGCGTCAGCGC
CGGAGGCCGGATGGAGGGAGGGAGCGACGGTGACGACGACGGGACGAGCT
CGTTCGTCAGCATGAGAGACGATGTGTCCGACGCCGGGAGCGTGATGAGC
GGATACACAAGCGTCAGCGCCGGAGGCCGGATGGAGGGAGGGAGGTACAA
CGGTCAATACAACAACAGAGGAGGGGGAGGAGGATTCGGTTCGTCAGCTT
CTTCCTACTCTTCGTCCTCGTCCGCAAGGAGGCCGCCAAGCGTAAGGTCA
TCTTCCAGTCGCCGACCCGCCTCCGTCGTCGGACTTACCCGATCGCTCGA
GCCCAGACCCCCACCACTAGCGAAGCAACGGTCAGAGGCGGCGTTTGCGG
TACAACGGTCAATACAACAACAGAGGAGGGGGAGGAGGATTCGGTTCGTC
AGCTTCTTCCTACTCTTCGTCCTCGTCCGCAAGGAGGCCGCCAAGCGTAA
GGTCATCTTCCAGTCGCCGACCCGCCTCCGTCGTCGGACTTACCCGATCG
CTCGAGCCCAGACCCCCACCACTAGCGAAGCAACGGTCAGAGGCGGCGTT
TGCG
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