mRNA_H-paniculata_contig11015.664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11015.664.1
Unique NamemRNA_H-paniculata_contig11015.664.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.360e-66
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = -2 
Query:    4 MVKTPSKKSAKAPKKAGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 345
            M KTPSKKSAKAPKKAG+KK  NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 114
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BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 4.750e-61
Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = -2 
Query:    4 SSMVKTPSKKSAKAPKKAGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 351
            S+M KTPSKKSAKAPKKAG+K  K KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFT
Sbjct:   13 STMAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFT 128
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BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.080e-59
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = -2 
Query:    4 MVKTPSKKSAKAPKKAGEK--KTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 345
            M KTPSKKSAKAPKK GEK    K KR+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFT
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFT 116
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BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 189 bits (479), Expect = 1.300e-59
Identity = 97/114 (85.09%), Postives = 108/114 (94.74%), Query Frame = -2 
Query:    4 MVKTPSKKSAKAPKKAGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 345
            M KTPSKK+AKAPKKAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFT
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFT 112
[Close]
BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.100e-59
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = -2 
Query:    4 MVKTPSKKSAKAPKKAGE-KKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 345
            M K PSKK+AKAPKKA + KK K KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFT
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFT 115
[Close]
BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.390e-57
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = -2 
Query:    4 MVKTPSKKSAKAPKKAGE-KKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 345
            M K PSKK+AKAPKKA + KK K KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFT
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFT 248
[Close]
BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 181 bits (459), Expect = 1.540e-56
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = -2 
Query:    4 MVKTPSKKSAKAPKKAGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 345
            M KTPSK+SAKAPKKA       KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFS 114
[Close]
BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.650e-56
Identity = 96/114 (84.21%), Postives = 107/114 (93.86%), Query Frame = -2 
Query:    4 MVKTPSKKSAKAPKKAGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 345
            M KTPSKK+A APKKAG K+++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+
Sbjct:    8 MAKTPSKKAA-APKKAGGKRSR-KRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFS 119
[Close]
BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.050e-56
Identity = 98/126 (77.78%), Postives = 109/126 (86.51%), Query Frame = -2 
Query:    4 FQKQHLFSSMVKTPSKKS-AKAPKKA--GEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFT 372
            F   H  S+M KTPSKK+ +KA KK   G KK   KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+
Sbjct:   26 FYHPHPISTMAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFS 151
[Close]
BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.550e-55
Identity = 95/117 (81.20%), Postives = 103/117 (88.03%), Query Frame = -2 
Query:   10 HLFSSMVKTPSKKSAKAPKKAGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTK 360
            +L   M KTPSKKSA  PKKA   K   KR+ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK
Sbjct:    1 NLSIKMAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11015.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.360e-6695.61Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA4.750e-6185.34Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A485K2U0_9STRA1.080e-5985.34Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU1.300e-5985.09Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJ22_9STRA2.100e-5986.96Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA1.390e-5786.96Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC1.540e-5682.46Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA3.650e-5684.21Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7S2P1D6_9STRA5.050e-5677.78Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]
A0A7S2U5X6_9STRA2.550e-5581.20Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11015contigH-paniculata_contig11015:6040..6481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.1
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog4577.GRMZM2G101268_P01
Hectar predicted targeting categoryother localisation
EggNOG OGs2CR5N@1,2R6Z9@2759,387HK@33090,3GVHF@35493,3IR8V@38820,3M78Z@4447
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size443
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928809.4142396-CDS-H-paniculata_contig11015:6039..63961622928809.4142396-CDS-H-paniculata_contig11015:6039..6396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11015 6040..6396 +
1691480628.4976294-CDS-H-paniculata_contig11015:6039..63961691480628.4976294-CDS-H-paniculata_contig11015:6039..6396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11015 6040..6396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928809.4268634-UTR-H-paniculata_contig11015:6396..64811622928809.4268634-UTR-H-paniculata_contig11015:6396..6481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11015 6397..6481 +
1691480628.5130563-UTR-H-paniculata_contig11015:6396..64811691480628.5130563-UTR-H-paniculata_contig11015:6396..6481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11015 6397..6481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11015.664.1prot_H-paniculata_contig11015.664.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11015 6040..6396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11015.664.1

>prot_H-paniculata_contig11015.664.1 ID=prot_H-paniculata_contig11015.664.1|Name=mRNA_H-paniculata_contig11015.664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
RSEFGHGLGALRHGVLGELSREHKTHSRLHLTRGQGGLLVVAGQLAGLAR
HALEHVVDERVHDRHAPLRDTRVGVHLLQHLVDVRRVRLQPLVFCLLLSS
LLRGLGGLLRRCLDHAAK*
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mRNA from alignment at H-paniculata_contig11015:6040..6481+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11015.664.1 ID=mRNA_H-paniculata_contig11015.664.1|Name=mRNA_H-paniculata_contig11015.664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=442bp|location=Sequence derived from alignment at H-paniculata_contig11015:6040..6481+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAGTGAATTTGGTCACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGG
CGAGCTCTCCAGGGAGCATAAGACGCACAGCCGTCTGCACCTCACGAGAG
GACAAGGTGGCCTTCTTGTTGTAGCGGGTCAACTTGCCGGACTCGCCCGC
CACGCGCTCGAACACGTCGTTGATGAACGAGTTCATGATAGACATGCCCC
GCTTAGAGATACCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTAGATG
TACGACGAGTACGACTCCAACCTCTTGTTTTTTGTCTTCTTCTCTCCAGC
CTTCTTAGGGGCCTTGGCGGACTTCTTCGACGGTGTCTTGACCATGCTGC
TAAATAGATGCTGTTTCTGAAATCAACTGTGCGATTGTGAACTGGGAGAG
AGACGGGGTGGACGAGGCCTCTGATGGAGTAGACAAGACAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11015:6040..6481+

>mRNA_H-paniculata_contig11015.664.1 ID=mRNA_H-paniculata_contig11015.664.1|Name=mRNA_H-paniculata_contig11015.664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig11015:6040..6481+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAGTGAATTTGGTCACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGG
CGAGCTCTCCAGGGAGCATAAGACGCACAGCCGTCTGCACCTCACGAGAG
GACAAGGTGGCCTTCTTGTTGTAGCGGGTCAACTTGCCGGACTCGCCCGC
CACGCGCTCGAACACGTCGTTGATGAACGAGTTCATGATAGACATGCCCC
GCTTAGAGATACCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTAGATG
TACGACGAGTACGACTCCAACCTCTTGTTTTTTGTCTTCTTCTCTCCAGC
CTTCTTAGGGGCCTTGGCGGACTTCTTCGACGGTGTCTTGACCATGCTGC
TAAATAGCGAAGTGAATTTGGTCACGGCCTTGGTGCCCTCAGACACGGCG
TGCTTGGCGAGCTCTCCAGGGAGCATAAGACGCACAGCCGTCTGCACCTC
ACGAGAGGACAAGGTGGCCTTCTTGTTGTAGCGGGTCAACTTGCCGGACT
CGCCCGCCACGCGCTCGAACACGTCGTTGATGAACGAGTTCATGATAGAC
ATGCCCCGCTTAGAGATACCCGTGTCGGGGTGCACCTGCTTCAGCACCTT
GTAGATGTACGACGAGTACGACTCCAACCTCTTGTTTTTTGTCTTCTTCT
CTCCAGCCTTCTTAGGGGCCTTGGCGGACTTCTTCGACGGTGTCTTGACC
ATGCTGCTAAATAG
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