mRNA_H-paniculata_contig245.6636.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig245.6636.1
Unique NamemRNA_H-paniculata_contig245.6636.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig245.6636.1 vs. uniprot
Match: D7FYM1_ECTSI (NLE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.230e-17
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = 3 
Query:   12 VRDFGADSDEDGEGTMGG-----GGAPSSMILQFTTLEGEIKGPQIDVPLGSTVPQMEELINQLLENDHKL 209
            V DFGADSD+D E    G     GG PSSMI+QF TLEGE KGPQIDVPLGSTV QMEEL+NQLLEN  K+
Sbjct:   29 VPDFGADSDDDVEDVARGKGGDEGGTPSSMIVQFATLEGENKGPQIDVPLGSTVLQMEELMNQLLENKDKV 99
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BLAST of mRNA_H-paniculata_contig245.6636.1 vs. uniprot
Match: A0A836CH64_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH64_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.610e-11
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 3 
Query:    6 PAVRDFGADSDEDGEGTMGGGGAPSSMILQFTTLEGEIKGPQIDVPLGSTVPQMEELINQLLEN 197
            P V DFGA+SD + E    G     SMI+QFT++EGE KGPQID+PLGSTV QME+++N+LL N
Sbjct:   29 PEVPDFGAESDGEEEDVSKG----PSMIVQFTSMEGEGKGPQIDIPLGSTVEQMEQVVNKLLGN 88
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BLAST of mRNA_H-paniculata_contig245.6636.1 vs. uniprot
Match: A0A7S1G396_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G396_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.140e-8
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:   75 PSSMILQFTTLEGEIKGPQIDVPLGSTVPQMEELINQLLENDHK 206
            PSS+I+QF T+EGE  GPQ+D+PL +T  QMEEL+N+LLEND +
Sbjct:  137 PSSLIVQFQTMEGEATGPQLDIPLDTTQGQMEELVNELLENDER 180
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BLAST of mRNA_H-paniculata_contig245.6636.1 vs. uniprot
Match: A0A6G0WP21_9STRA (NLE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WP21_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.150e-5
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   78 SSMILQFTTLEGEIKGPQIDVPLGSTVPQMEELINQLLENDHK 206
            +S+I QF   +GE  GPQ+D+P+ STV QMEELINQLL+N ++
Sbjct:   28 ASVIAQFKNEQGENVGPQLDIPVASTVTQMEELINQLLDNGNQ 70
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BLAST of mRNA_H-paniculata_contig245.6636.1 vs. uniprot
Match: A0A067CTX2_SAPPC (NLE domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CTX2_SAPPC)

HSP 1 Score: 55.1 bits (131), Expect = 4.230e-5
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:   78 SSMILQFTTLEGEIKGPQIDVPLGSTVPQMEELINQLLEN 197
            +S+I QF   +GE  GPQ+D+PL STV QMEEL+NQLL+N
Sbjct:   29 ASVIAQFKNEQGEPVGPQLDIPLTSTVAQMEELVNQLLQN 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig245.6636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYM1_ECTSI3.230e-1770.42NLE domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CH64_9STRA3.610e-1159.38WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S1G396_9STRA1.140e-863.64Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6G0WP21_9STRA3.150e-558.14NLE domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A067CTX2_SAPPC4.230e-562.50NLE domain-containing protein n=4 Tax=Saprolegniac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig245contigH-paniculata_contig245:3407..4166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D7FYM1
Preferred nameNLE1
KEGG koko:K07375,ko:K14855
KEGG Pathwayko04145,ko04540,ko05130,map04145,map04540,map05130
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000151,GO:0001501,GO:0001655,GO:0001701,GO:0001756,GO:0001822,GO:0001824,GO:0001825,GO:0001826,GO:0003002,GO:0003674,GO:0003779,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005840,GO:0005856,GO:0005884,GO:0005938,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007346,GO:0007389,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0009553,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009892,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010466,GO:0010564,GO:0010605,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0015629,GO:0016043,GO:0019222,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030036,GO:0030042,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030479,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030836,GO:0030837,GO:0030863,GO:0030864,GO:0031323,GO:0031324,GO:0031333,GO:0031461,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032271,GO:0032272,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0032991,GO:0033043,GO:0034622,GO:0035282,GO:0042254,GO:0042255,GO:0042273,GO:0042592,GO:0042641,GO:0042643,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043242,GO:0043243,GO:0043244,GO:0043254,GO:0043281,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0045786,GO:0045861,GO:0045930,GO:0048229,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048646,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051015,GO:0051016,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051261,GO:0051302,GO:0051336,GO:0051346,GO:0051493,GO:0051494,GO:0051495,GO:0051693,GO:0051716,GO:0051726,GO:0051782,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0060548,GO:0060828,GO:0061053,GO:0061484,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0071944,GO:0072001,GO:0080008,GO:0080090,GO:0090066,GO:0090263,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:1901879,GO:1901880,GO:1901881,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1990234,GO:1990904,GO:2000116,GO:2000117,GO:2001233,GO:2001234,GO:2001267,GO:2001268
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsKOG0271@1,KOG0271@2759
Ec32 ortholog descriptionG-protein, beta subunit
Ec32 orthologEc-26_002740.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036,ko04147,ko04812
Exons1
Model size760
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig245.6636.1prot_H-paniculata_contig245.6636.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig245 3463..3726 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.30927-UTR-H-paniculata_contig245:3406..34621622929709.30927-UTR-H-paniculata_contig245:3406..3462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig245 3407..3462 +
1691480976.7867026-UTR-H-paniculata_contig245:3406..34621691480976.7867026-UTR-H-paniculata_contig245:3406..3462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig245 3407..3462 +
1622929709.3392534-UTR-H-paniculata_contig245:3726..41661622929709.3392534-UTR-H-paniculata_contig245:3726..4166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig245 3727..4166 +
1691480976.8060915-UTR-H-paniculata_contig245:3726..41661691480976.8060915-UTR-H-paniculata_contig245:3726..4166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig245 3727..4166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.32362-CDS-H-paniculata_contig245:3462..37261622929709.32362-CDS-H-paniculata_contig245:3462..3726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig245 3463..3726 +
1691480976.7983913-CDS-H-paniculata_contig245:3462..37261691480976.7983913-CDS-H-paniculata_contig245:3462..3726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig245 3463..3726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig245.6636.1

>prot_H-paniculata_contig245.6636.1 ID=prot_H-paniculata_contig245.6636.1|Name=mRNA_H-paniculata_contig245.6636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MGGGGAPSSMILQFTTLEGEIKGPQIDVPLGSTVPQMEELINQLLENDHK
LSGDKKRLSCHHSSQQRVACGMLVHQFRYRQLVTRCV*
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mRNA from alignment at H-paniculata_contig245:3407..4166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig245.6636.1 ID=mRNA_H-paniculata_contig245.6636.1|Name=mRNA_H-paniculata_contig245.6636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=760bp|location=Sequence derived from alignment at H-paniculata_contig245:3407..4166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTCCAGCTGTGCGTGATTTTGGTGCTGACTCGGACGAAGATGGTGAA
GGAACGATGGGCGGGGGGGGTGCGCCGTCTTCCATGATTTTGCAGTTCAC
CACGTTGGAAGGGGAAATCAAAGGGCCGCAGATCGACGTCCCGCTCGGCT
CTACGGTGCCGCAGATGGAGGAGCTGATCAACCAGTTGTTGGAGAATGAT
CATAAGTTGAGTGGTGATAAAAAGCGCTTGTCGTGTCACCATAGCTCCCA
ACAACGAGTAGCCTGCGGTATGCTTGTACATCAATTTCGATATAGGCAAC
TGGTTACACGCTGTGTTTAGTTGTACTTTGCCATGTATGTCAATATAAGT
GTTAATATAATCCCTCCGTCCCAAAAGTCTGCGATGTCATGGTTTCTCAT
ATCTTGTGTAGGCCGTTTTTATACGAATACGAAGAGTTTTTCGGTCATGT
ATGGCTTGAATTGAACTTATGGACGCAAAAATTAAGAATAATTATTTCGT
TCTCGCATATTGTTCCGAAATAGTTGCGAAAATTTCGCGAGAAGGGGATC
TAAAAAACAACCCTTTTCGGCTCTATTTTGAGTGGCTGCGCTGCGCGCGG
CGGCGGACAAGGCGTCCCCCCTATCGTCTATCATCATATAACGTCTCAGC
ACCTCGCCAAGAGCTGTACGACTCTCGTGCAGCCTCCAGACCATCTGCGG
CGCGAGTTTCGCATCCAACATTTCCACTCCGGCGAGTCCGGCATCTTTTG
CCAAGAGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig245:3407..4166+

>mRNA_H-paniculata_contig245.6636.1 ID=mRNA_H-paniculata_contig245.6636.1|Name=mRNA_H-paniculata_contig245.6636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig245:3407..4166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGGGGGGGGTGCGCCGTCTTCCATGATTTTGCAGTTCACCACGTT
GGAAGGGGAAATCAAAGGGCCGCAGATCGACGTCCCGCTCGGCTCTACGG
TGCCGCAGATGGAGGAGCTGATCAACCAGTTGTTGGAGAATGATCATAAG
TTGAGTGGTGATAAAAAGCGCTTGTCGTGTCACCATAGCTCCCAACAACG
AGTAGCCTGCGGTATGCTTGTACATCAATTTCGATATAGGCAACTGGTTA
CACGCTGTGTTTAGATGGGCGGGGGGGGTGCGCCGTCTTCCATGATTTTG
CAGTTCACCACGTTGGAAGGGGAAATCAAAGGGCCGCAGATCGACGTCCC
GCTCGGCTCTACGGTGCCGCAGATGGAGGAGCTGATCAACCAGTTGTTGG
AGAATGATCATAAGTTGAGTGGTGATAAAAAGCGCTTGTCGTGTCACCAT
AGCTCCCAACAACGAGTAGCCTGCGGTATGCTTGTACATCAATTTCGATA
TAGGCAACTGGTTACACGCTGTGTTTAG
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