mRNA_H-paniculata_contig245.6641.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig245.6641.1
Unique NamemRNA_H-paniculata_contig245.6641.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig245.6641.1 vs. uniprot
Match: A0A6H5JZF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.590e-5
Identity = 49/153 (32.03%), Postives = 72/153 (47.06%), Query Frame = 1 
Query:    1 SQGEVTTSNLKRELSRVRRDYIMSTFNQSERHRVLLGGRQ-GSSRQSRVPPNNSSSGSTRSNGFGQVRVSGGGKTIEEWATDTFSAPAKSKMVSRLGSSTLQAFREGGSWEDVFISRVGRIPTSTPGGRQNCLDGMSTRKEDECLSYLLVPHT 456
            S G  T ++L+RELSRVRR++IMST N+SE+   LLG R+ G S Q R  P+  SS         +  V+GGG  +                  +  S  LQ  R   SW++VF+++  +   +    R N     S  +E E   +  V H+
Sbjct:  169 STGRSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRKGISSQRRRHPDRDSS--------TKELVAGGGHDL----------------CRKENSRALQKARV--SWDNVFMTKEDQSAETVSDHRSNSGLNKSNAREIEKPIFRHVSHS 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig245.6641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZF3_9PHAE8.590e-532.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig245contigH-paniculata_contig245:39973..40799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size533
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.2300303-CDS-H-paniculata_contig245:39972..404321622929709.2300303-CDS-H-paniculata_contig245:39972..40432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig245 39973..40432 +
1691480976.761745-CDS-H-paniculata_contig245:39972..404321691480976.761745-CDS-H-paniculata_contig245:39972..40432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig245 39973..40432 +
1622929709.2512538-CDS-H-paniculata_contig245:40728..407991622929709.2512538-CDS-H-paniculata_contig245:40728..40799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig245 40729..40799 +
1691480976.7749872-CDS-H-paniculata_contig245:40728..407991691480976.7749872-CDS-H-paniculata_contig245:40728..40799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig245 40729..40799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig245.6641.1prot_H-paniculata_contig245.6641.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig245 39973..40799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig245.6641.1

>prot_H-paniculata_contig245.6641.1 ID=prot_H-paniculata_contig245.6641.1|Name=mRNA_H-paniculata_contig245.6641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
SQGEVTTSNLKRELSRVRRDYIMSTFNQSERHRVLLGGRQGSSRQSRVPP
NNSSSGSTRSNGFGQVRVSGGGKTIEEWATDTFSAPAKSKMVSRLGSSTL
QAFREGGSWEDVFISRVGRIPTSTPGGRQNCLDGMSTRKEDECLSYLLVP
HTPEKASWSHPSCKVGAASSSTSCSR*
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mRNA from alignment at H-paniculata_contig245:39973..40799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig245.6641.1 ID=mRNA_H-paniculata_contig245.6641.1|Name=mRNA_H-paniculata_contig245.6641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=827bp|location=Sequence derived from alignment at H-paniculata_contig245:39973..40799+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACAAGGAGAGGTCACCACGAGCAACCTGAAGCGAGAGCTCTCGCGTGT
ACGTCGAGACTATATTATGAGCACCTTCAACCAAAGCGAGCGGCATAGAG
TACTATTGGGCGGTCGTCAAGGCTCATCTCGACAATCCCGTGTGCCGCCT
AATAACAGTAGTAGTGGTAGTACTAGAAGTAATGGGTTTGGACAAGTTCG
GGTATCCGGTGGAGGCAAAACAATTGAAGAATGGGCGACGGATACGTTTT
CTGCACCAGCCAAGAGCAAAATGGTCTCTCGGCTTGGGTCCAGCACTCTA
CAAGCCTTCCGTGAGGGGGGGTCCTGGGAGGATGTATTCATTTCGAGGGT
GGGAAGGATTCCGACTAGCACCCCTGGAGGGAGGCAAAATTGCTTGGATG
GCATGAGTACGCGGAAAGAGGACGAATGTCTTTCGTATTTATTGGTTCCA
CATACTCCAGGTTTGTATGACTAGGGACGCGACAGTGCATGGGCTTGGTG
ATAGCCTGCCAACTACAGTAGCATATTAAGGTTAAGATGTTATCGCTTGG
CGCGGCATTTTCACTCCAAGATGACTGATAGGAAGCAGCTCGCGCCGCAT
GATGGACGCTCGTTATGGTGTTCGTTTCAGACATGACATTCGTTCGTGTT
CACACGTTCAAATAGGAAATTTCATGCGCTATATGTGTAATTGTTCACAT
CGTACATGCGTTGAACTTGAATTTCGCGTGCCCTGGGTTTCAAATCCTTT
CTTCAGAAAAGGCGAGCTGGTCCCATCCCTCATGCAAGGTCGGCGCAGCT
TCTTCTAGTACTTCGTGTTCGCGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig245:39973..40799+

>mRNA_H-paniculata_contig245.6641.1 ID=mRNA_H-paniculata_contig245.6641.1|Name=mRNA_H-paniculata_contig245.6641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig245:39973..40799+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACAAGGAGAGGTCACCACGAGCAACCTGAAGCGAGAGCTCTCGCGTGT
ACGTCGAGACTATATTATGAGCACCTTCAACCAAAGCGAGCGGCATAGAG
TACTATTGGGCGGTCGTCAAGGCTCATCTCGACAATCCCGTGTGCCGCCT
AATAACAGTAGTAGTGGTAGTACTAGAAGTAATGGGTTTGGACAAGTTCG
GGTATCCGGTGGAGGCAAAACAATTGAAGAATGGGCGACGGATACGTTTT
CTGCACCAGCCAAGAGCAAAATGGTCTCTCGGCTTGGGTCCAGCACTCTA
CAAGCCTTCCGTGAGGGGGGGTCCTGGGAGGATGTATTCATTTCGAGGGT
GGGAAGGATTCCGACTAGCACCCCTGGAGGGAGGCAAAATTGCTTGGATG
GCATGAGTACGCGGAAAGAGGACGAATGTCTTTCGTATTTATTGGTTCCA
CATACTCCAGTCACAAGGAGAGGTCACCACGAGCAACCTGAAGCGAGAGC
TCTCGCGTGTACGTCGAGACTATATTATGAGCACCTTCAACCAAAGCGAG
CGGCATAGAGTACTATTGGGCGGTCGTCAAGGCTCATCTCGACAATCCCG
TGTGCCGCCTAATAACAGTAGTAGTGGTAGTACTAGAAGTAATGGGTTTG
GACAAGTTCGGGTATCCGGTGGAGGCAAAACAATTGAAGAATGGGCGACG
GATACGTTTTCTGCACCAGCCAAGAGCAAAATGGTCTCTCGGCTTGGGTC
CAGCACTCTACAAGCCTTCCGTGAGGGGGGGTCCTGGGAGGATGTATTCA
TTTCGAGGGTGGGAAGGATTCCGACTAGCACCCCTGGAGGGAGGCAAAAT
TGCTTGGATGGCATGAGTACGCGGAAAGAGGACGAATGTCTTTCGTATTT
ATTGGTTCCACATACTCCAGAAAAGGCGAGCTGGTCCCATCCCTCATGCA
AGGTCGGCGCAGCTTCTTCTAGTACTTCGTGTTCGCGTTAAAAAAGGCGA
GCTGGTCCCATCCCTCATGCAAGGTCGGCGCAGCTTCTTCTAGTACTTCG
TGTTCGCGTTAA
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