mRNA_H-paniculata_contig24485.6633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24485.6633.1
Unique NamemRNA_H-paniculata_contig24485.6633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24485.6633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24485contigH-paniculata_contig24485:810..1645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size836
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24485.6633.1prot_H-paniculata_contig24485.6633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24485 933..1364 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.630642-UTR-H-paniculata_contig24485:809..9321622929708.630642-UTR-H-paniculata_contig24485:809..932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24485 810..932 +
1691480976.5292332-UTR-H-paniculata_contig24485:809..9321691480976.5292332-UTR-H-paniculata_contig24485:809..932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24485 810..932 +
1622929708.6546924-UTR-H-paniculata_contig24485:1364..16451622929708.6546924-UTR-H-paniculata_contig24485:1364..1645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24485 1365..1645 +
1691480976.5457332-UTR-H-paniculata_contig24485:1364..16451691480976.5457332-UTR-H-paniculata_contig24485:1364..1645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24485 1365..1645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.642794-CDS-H-paniculata_contig24485:932..13641622929708.642794-CDS-H-paniculata_contig24485:932..1364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24485 933..1364 +
1691480976.5374389-CDS-H-paniculata_contig24485:932..13641691480976.5374389-CDS-H-paniculata_contig24485:932..1364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24485 933..1364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24485.6633.1

>prot_H-paniculata_contig24485.6633.1 ID=prot_H-paniculata_contig24485.6633.1|Name=mRNA_H-paniculata_contig24485.6633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MRISLHKSPGLLRSSYTTDRQALQKHLASGAVFITKTLGHNTNESKHTYI
HACMYACMPPPEHGHYQGNSDNDPDLNVKTHTKPKHYITQYTDNPSTNER
RIHGRNPPPTYTYIYITKKAIRQKQMTPQPEVLSRNLLLTPTL*
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mRNA from alignment at H-paniculata_contig24485:810..1645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24485.6633.1 ID=mRNA_H-paniculata_contig24485.6633.1|Name=mRNA_H-paniculata_contig24485.6633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=836bp|location=Sequence derived from alignment at H-paniculata_contig24485:810..1645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACGATTGACGCTGAGTCCGCGTTTGCCGAGGAAACCTACGCGAGTTAT
TCTCCAACGTTTTCGACAACGTTTCCTCCATATCTACTTAGTTTCCACGA
GCTTCAAGAGTTGTACACTTTCAATGCGCATTTCGCTGCACAAGTCTCCG
GGTTTACTTCGTTCATCGTATACGACAGATAGACAAGCACTACAAAAACA
CCTTGCTTCTGGTGCAGTGTTTATCACTAAAACTTTAGGACACAACACAA
ACGAAAGCAAACATACATACATACATGCATGCATGTATGCATGTATGCCT
CCCCCCGAACATGGGCACTATCAAGGTAATTCCGATAATGACCCAGATCT
CAATGTAAAAACACACACAAAACCAAAACATTACATAACGCAATACACAG
ATAACCCGAGTACGAATGAACGACGCATACACGGGAGAAACCCCCCCCCA
ACATATACATATATATATATAACAAAAAAAGCAATTCGACAAAAACAAAT
GACCCCCCAACCAGAGGTCCTTTCCCGAAATCTCCTTTTGACGCCCACTC
TTTAACAAAACACTGCTGGGAACCTCGCAACGCTACATTCGCGCGTGCAA
ATCCTAGGTGCGCCTGTTTGCGCTTGTTCATTCACATTTCAAAGTATGTA
CACGCTTCTTTCTTGCCGTTCTTCCGAGAGTTTCGCCAGGAGCGTTTGAG
GCACGAAGCCCCGTTGCTGCTGAAAAATAACACTCGAAAAAGAACGAAAA
AAATAGTTTAAATACTTGGGGGCCAAGTCATGAATTCTGTTTTCCATAAG
ATAATCCTCGTTTGTTCGTTCGTTCCAACAGTATCA
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Coding sequence (CDS) from alignment at H-paniculata_contig24485:810..1645+

>mRNA_H-paniculata_contig24485.6633.1 ID=mRNA_H-paniculata_contig24485.6633.1|Name=mRNA_H-paniculata_contig24485.6633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig24485:810..1645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCATTTCGCTGCACAAGTCTCCGGGTTTACTTCGTTCATCGTATAC
GACAGATAGACAAGCACTACAAAAACACCTTGCTTCTGGTGCAGTGTTTA
TCACTAAAACTTTAGGACACAACACAAACGAAAGCAAACATACATACATA
CATGCATGCATGTATGCATGTATGCCTCCCCCCGAACATGGGCACTATCA
AGGTAATTCCGATAATGACCCAGATCTCAATGTAAAAACACACACAAAAC
CAAAACATTACATAACGCAATACACAGATAACCCGAGTACGAATGAACGA
CGCATACACGGGAGAAACCCCCCCCCAACATATACATATATATATATAAC
AAAAAAAGCAATTCGACAAAAACAAATGACCCCCCAACCAGAGGTCCTTT
CCCGAAATCTCCTTTTGACGCCCACTCTTTAAATGCGCATTTCGCTGCAC
AAGTCTCCGGGTTTACTTCGTTCATCGTATACGACAGATAGACAAGCACT
ACAAAAACACCTTGCTTCTGGTGCAGTGTTTATCACTAAAACTTTAGGAC
ACAACACAAACGAAAGCAAACATACATACATACATGCATGCATGTATGCA
TGTATGCCTCCCCCCGAACATGGGCACTATCAAGGTAATTCCGATAATGA
CCCAGATCTCAATGTAAAAACACACACAAAACCAAAACATTACATAACGC
AATACACAGATAACCCGAGTACGAATGAACGACGCATACACGGGAGAAAC
CCCCCCCCAACATATACATATATATATATAACAAAAAAAGCAATTCGACA
AAAACAAATGACCCCCCAACCAGAGGTCCTTTCCCGAAATCTCCTTTTGA
CGCCCACTCTTTAA
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