mRNA_H-paniculata_contig24482.6632.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24482.6632.1
Unique NamemRNA_H-paniculata_contig24482.6632.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 102 bits (255), Expect = 2.480e-23
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    1 EPISTVEAIKGPE-------VGTCLAATEEEEWWTLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSFHLTPETYRL 444
            EP+S  EAIKGPE       +   L A E+   WT+++N          +P  R  I  KWIFK+KL E+G++ RYKARLV + +SQ EG D++ET APV R   + T+   A  + +E+    V  A+LN  + EE+F++LP    +  +  RL
Sbjct:  173 EPVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKN----------LPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFDVKTAFLNGDLEEEIFMELPEGTAVPKQIVRL 317          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 103 bits (258), Expect = 3.910e-23
Identity = 56/131 (42.75%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   25 IKGPEVGTCLAATEEEEWWTLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSF 417
            +KGPE     AA ++E   +L ENGTW+  D   +P  R A+  KWIFKRKL EDG++ RYKARLV Q F+Q  G D+DE  APV R      +  +A++    ++   V  AYLN  + E +F++ PP +
Sbjct:    1 MKGPEAELWKAAMDDE-MTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGY 127          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 101 bits (251), Expect = 4.030e-23
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   58 ATEEEEWW---------TLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSF 417
            ++EE E+W         +L  NGTWE  D   +P  R AI +KW+FK K K DGS+ RYKARLV   FSQVEG D+ ET APV R   +  V  +A +  F++  M V+ A+LN  ++E+++++ P  F
Sbjct:   75 SSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 200          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 102 bits (255), Expect = 1.350e-22
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    1 EPISTVEAIKGPE-------VGTCLAATEEEEWWTLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSFHLTPETYRL 444
            EP+S  EAIKGPE       +   L A E+   WT+++N          +P  R  I  KWIFK+KL E+G++ RYKARLV + +SQ EG D++ET APV R   + T+   A  + +E+    V  A+LN  + EE+F++LP    +  +  RL
Sbjct:  548 EPVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKN----------LPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFDVKTAFLNGDLEEEIFMELPEGTAVPKQIVRL 692          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: Q53ML4_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53ML4_ORYSJ)

HSP 1 Score: 102 bits (255), Expect = 1.450e-22
Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   70 EEWWTLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSF 417
            EE      N  W   +P   P+ RN I TKW FK K  EDG + R KARLV Q F+QVEG DFDET APVAR+  +  +F  A    F+L  MGV +A+LN  ++EE++VK PP F
Sbjct: 1009 EELENFERNKVWTLVEP---PSRRNIIGTKWGFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLFAFAASKGFKLYQMGVKSAFLNGFIQEEVYVKQPPGF 1121          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A5E8C149_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C149_9ASCO)

HSP 1 Score: 101 bits (251), Expect = 4.680e-22
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   58 ATEEEEWW---------TLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSF 417
            ++EE E+W         +L  NGTWE  D   +P  R AI +KW+FK K K DGS+ RYKARLV   FSQVEG D+ ET APV R   +  V  +A +  F++  M V+ A+LN  ++E+++++ P  F
Sbjct:  214 SSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 339          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A5E8C4W4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4W4_9ASCO)

HSP 1 Score: 101 bits (251), Expect = 4.810e-22
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   58 ATEEEEWW---------TLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSF 417
            ++EE E+W         +L  NGTWE  D   +P  R AI +KW+FK K K DGS+ RYKARLV   FSQVEG D+ ET APV R   +  V  +A +  F++  M V+ A+LN  ++E+++++ P  F
Sbjct:  716 SSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 841          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A8H7LQU3_9AGAM (Reverse transcriptase (RNA-dependent DNA polymerase) n=3 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7LQU3_9AGAM)

HSP 1 Score: 101 bits (251), Expect = 4.840e-22
Identity = 55/138 (39.86%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   22 AIKGPEVGTCLAATEEEEWWTLMEN--GTWESEDPGRI---PAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSFH 420
            A   P V   LA  +  EWW  M+N   T++  D  ++   P  R A+  KW+   K  E+G   RYKA+LV Q FSQ  G DFD+T APV R+  +CT+  LA  +++++  + V+AAYL+APV+E+L+++  P F+
Sbjct:  450 AANNPTVEEALAGPQALEWWKAMQNEVSTFDKLDTTKLTKLPHKRKAMGNKWVLMLKRDENGEPVRYKAQLVVQGFSQQPGIDFDKTFAPVVRLDSICTLVLLANNNNWDVRQLDVNAAYLHAPVKEDLYMQQIPYFN 587          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A5E8CAT7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8CAT7_9ASCO)

HSP 1 Score: 101 bits (251), Expect = 4.850e-22
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   58 ATEEEEWW---------TLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSF 417
            ++EE E+W         +L  NGTWE  D   +P  R AI +KW+FK K K DGS+ RYKARLV   FSQVEG D+ ET APV R   +  V  +A +  F++  M V+ A+LN  ++E+++++ P  F
Sbjct:  458 SSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 583          
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Match: A0A5E8C4Z1_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4Z1_9ASCO)

HSP 1 Score: 101 bits (251), Expect = 4.890e-22
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   58 ATEEEEWW---------TLMENGTWESEDPGRIPAWRNAIRTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLCTVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSF 417
            ++EE E+W         +L  NGTWE  D   +P  R AI +KW+FK K K DGS+ RYKARLV   FSQVEG D+ ET APV R   +  V  +A +  F++  M V+ A+LN  ++E+++++ P  F
Sbjct:  550 SSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 675          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24482.6632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI2.480e-2338.71Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A182GIT5_AEDAL3.910e-2342.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1W8_9ASCO4.030e-2342.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7KM48_LASNI1.350e-2238.71Integrase catalytic domain-containing protein n=2 ... [more]
Q53ML4_ORYSJ1.450e-2249.14Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A5E8C149_9ASCO4.680e-2242.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8C4W4_9ASCO4.810e-2242.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7LQU3_9AGAM4.840e-2239.86Reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A5E8CAT7_9ASCO4.850e-2242.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4Z1_9ASCO4.890e-2242.64Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24482contigH-paniculata_contig24482:2196..2642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.7
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog28532.XP_010555983.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3884B@33090,3GZ1B@35493,3HXH8@3699,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.5905175-CDS-H-paniculata_contig24482:2195..26421622929708.5905175-CDS-H-paniculata_contig24482:2195..2642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24482 2196..2642 -
1691480976.517479-CDS-H-paniculata_contig24482:2195..26421691480976.517479-CDS-H-paniculata_contig24482:2195..2642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24482 2196..2642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24482.6632.1prot_H-paniculata_contig24482.6632.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24482 2196..2642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24482.6632.1

>prot_H-paniculata_contig24482.6632.1 ID=prot_H-paniculata_contig24482.6632.1|Name=mRNA_H-paniculata_contig24482.6632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
EPISTVEAIKGPEVGTCLAATEEEEWWTLMENGTWESEDPGRIPAWRNAI
RTKWIFKRKLKEDGSMARYKARLVGQRFSQVEGEDFDETSAPVARMSKLC
TVFRLATEHDFELEGMGVDAAYLNAPVREELFVKLPPSFHLTPETYRLW
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mRNA from alignment at H-paniculata_contig24482:2196..2642-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24482.6632.1 ID=mRNA_H-paniculata_contig24482.6632.1|Name=mRNA_H-paniculata_contig24482.6632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig24482:2196..2642- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGATATCCACGGTAGAAGCAATAAAGGGTCCAGAGGTAGGAACATG TCTCGCGGCGACGGAGGAGGAGGAATGGTGGACGTTGATGGAAAATGGAA CATGGGAAAGCGAAGACCCGGGGAGGATACCGGCATGGCGGAATGCGATC CGTACGAAATGGATTTTCAAGCGGAAGCTGAAGGAGGACGGTAGCATGGC ACGCTACAAAGCTCGACTGGTGGGTCAACGATTTTCCCAGGTGGAGGGTG AAGATTTCGATGAAACCAGTGCCCCCGTAGCTCGCATGTCGAAGTTATGT ACTGTTTTTCGCCTGGCCACCGAACATGATTTCGAATTAGAAGGCATGGG CGTAGATGCGGCGTATTTGAACGCCCCGGTAAGAGAAGAACTGTTTGTTA AGCTACCTCCTAGTTTTCATCTTACTCCCGAGACATATCGTTTGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig24482:2196..2642-

>mRNA_H-paniculata_contig24482.6632.1 ID=mRNA_H-paniculata_contig24482.6632.1|Name=mRNA_H-paniculata_contig24482.6632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig24482:2196..2642- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGATATCCACGGTAGAAGCAATAAAGGGTCCAGAGGTAGGAACATG
TCTCGCGGCGACGGAGGAGGAGGAATGGTGGACGTTGATGGAAAATGGAA
CATGGGAAAGCGAAGACCCGGGGAGGATACCGGCATGGCGGAATGCGATC
CGTACGAAATGGATTTTCAAGCGGAAGCTGAAGGAGGACGGTAGCATGGC
ACGCTACAAAGCTCGACTGGTGGGTCAACGATTTTCCCAGGTGGAGGGTG
AAGATTTCGATGAAACCAGTGCCCCCGTAGCTCGCATGTCGAAGTTATGT
ACTGTTTTTCGCCTGGCCACCGAACATGATTTCGAATTAGAAGGCATGGG
CGTAGATGCGGCGTATTTGAACGCCCCGGTAAGAGAAGAACTGTTTGTTA
AGCTACCTCCTAGTTTTCATCTTACTCCCGAGACATATCGTTTGTGGGAG
CCGATATCCACGGTAGAAGCAATAAAGGGTCCAGAGGTAGGAACATGTCT
CGCGGCGACGGAGGAGGAGGAATGGTGGACGTTGATGGAAAATGGAACAT
GGGAAAGCGAAGACCCGGGGAGGATACCGGCATGGCGGAATGCGATCCGT
ACGAAATGGATTTTCAAGCGGAAGCTGAAGGAGGACGGTAGCATGGCACG
CTACAAAGCTCGACTGGTGGGTCAACGATTTTCCCAGGTGGAGGGTGAAG
ATTTCGATGAAACCAGTGCCCCCGTAGCTCGCATGTCGAAGTTATGTACT
GTTTTTCGCCTGGCCACCGAACATGATTTCGAATTAGAAGGCATGGGCGT
AGATGCGGCGTATTTGAACGCCCCGGTAAGAGAAGAACTGTTTGTTAAGC
TACCTCCTAGTTTTCATCTTACTCCCGAGACATATCGTTTGTGG
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