mRNA_H-paniculata_contig2448.6631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2448.6631.1
Unique NamemRNA_H-paniculata_contig2448.6631.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2448.6631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2448contigH-paniculata_contig2448:3891..7993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size425
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2448.6631.1prot_H-paniculata_contig2448.6631.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2448 6304..7993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.4702864-UTR-H-paniculata_contig2448:3890..39651622929708.4702864-UTR-H-paniculata_contig2448:3890..3965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2448 3891..3965 +
1691480976.4692526-UTR-H-paniculata_contig2448:3890..39651691480976.4692526-UTR-H-paniculata_contig2448:3890..3965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2448 3891..3965 +
1622929708.4935365-UTR-H-paniculata_contig2448:6289..63031622929708.4935365-UTR-H-paniculata_contig2448:6289..6303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2448 6290..6303 +
1691480976.4793236-UTR-H-paniculata_contig2448:6289..63031691480976.4793236-UTR-H-paniculata_contig2448:6289..6303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2448 6290..6303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.517696-CDS-H-paniculata_contig2448:6303..63371622929708.517696-CDS-H-paniculata_contig2448:6303..6337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2448 6304..6337 +
1691480976.488944-CDS-H-paniculata_contig2448:6303..63371691480976.488944-CDS-H-paniculata_contig2448:6303..6337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2448 6304..6337 +
1622929708.5333724-CDS-H-paniculata_contig2448:7387..76241622929708.5333724-CDS-H-paniculata_contig2448:7387..7624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2448 7388..7624 +
1691480976.4998348-CDS-H-paniculata_contig2448:7387..76241691480976.4998348-CDS-H-paniculata_contig2448:7387..7624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2448 7388..7624 +
1622929708.5487266-CDS-H-paniculata_contig2448:7928..79931622929708.5487266-CDS-H-paniculata_contig2448:7928..7993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2448 7929..7993 +
1691480976.5084925-CDS-H-paniculata_contig2448:7928..79931691480976.5084925-CDS-H-paniculata_contig2448:7928..7993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2448 7929..7993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2448.6631.1

>prot_H-paniculata_contig2448.6631.1 ID=prot_H-paniculata_contig2448.6631.1|Name=mRNA_H-paniculata_contig2448.6631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MNQPPPGGGPPGMGGPPPGMGGPRPPGMGGPRPPGMGGPPPPGGHPNGNN
RQQGPPGMSGGGPRGGPMMGGGMFHGGPPGMQGGMPPPGMGMGGPGMGMG
MGMGMPPPGMGG
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mRNA from alignment at H-paniculata_contig2448:3891..7993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2448.6631.1 ID=mRNA_H-paniculata_contig2448.6631.1|Name=mRNA_H-paniculata_contig2448.6631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4103bp|location=Sequence derived from alignment at H-paniculata_contig2448:3891..7993+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGATTGAACAGTGAAGGACGTAACCACGGGATAGCTCTGCTGATCGA
CAGCAAAGAACACGATATCGAAAGGGTGAGTGTTTTTATAGATTTCTGTT
ATTTTGTCCTTGATATTTTGGTGCTGTTGGCGGGCTAACCCTCTTTGCGC
CCTACCCAACCAATTTCGAAATTTGGTCGTTGTTGTCGTCTTTCTTGTAG
GGGTGCGGTCAGTAGGTGATCGACAATCACATGATGCACGTCGATCACTT
GTCCAGTCTTGAGCATATATGTCTGACTGCTCATGCAGTGCAGGAAGAGC
TATGAATCGGCGTCCATGAGTGTCGCATGTATGTACCAGAGGCAATATAA
AAGTAGATTGCTTCTGTGCCCTACCAGACAGCAGTGCACCCCTCGTGTGA
GCAGATGAACAGATGGTCATAGCAGTCCGTACAACAGCTCATGACAGCCA
GTCCATTACAGCAGCGACCTCATCAAGCAAAGAGGCGTTGCTTGCAGTAG
TACACGCACCAAATTCCCGTTTGCATGACTTTGATCCACCAATAAGTCCC
CCATCACAACGTTTTGACGCGGTCAGTCGTTACAAAACGTGGGTGTTGGT
TCGACGGTAGTAAATAATACTAGATACGAGTAGTAGTAATTCGCAGGGTT
GGCTTTCCTTTTCGCCATCACAGATTTTTTGCGAAGCCCGGGTTTCATAG
CATAGCATCGCATCGCATCGCATCCATCATCACACCCCCTACTGACCTGG
TGACTGTACTGTAGTCTGCTGTACAGGACTGAAATGTCTCTCTGTTCGTG
AGAATCGATAACCGTGAGAGTGGGCTAGATAACCCCAGCATGATATATTT
GTAAATGTACTGGAAATACTTACTGCACACCGTGCCAAAATAGTTGCCTT
CCCCTTCCCTTGTGATCCCGCCGAAAGCGGTTCAAATGAAGCCATTTTAC
ATGACCGTAAAATTCTACATTCCCATCGGCGAATCGGGCAGTAATCCTAA
ATAACCGTCCCTGAACCAACCGGTCGTCAAGGTAATAATTTTCACCAGTC
CATATGTGAACCAAGCAGAAATCTATGTGCTTACCGGCGAACCGGCCAAA
AATTGTCATGCATCACCATGCGCGAACCGGTTCATAACTCCCAAGTTGGT
TTTGTAAAAAAAGGCATCGCGGAATGCCCAGCTCTGTGAAAAACACCCTT
GTGTTAGTTTCAACGTTTTTCATTTTCTCGAACACAATTTTGCTCGTGAC
GCTAAATACGTCGCTGTTGAAAATATATAGCTTCAAAAGCTTTAGATGGT
CGTGCGCTATCTGCTGTCAAGTGCTGTTCTTTTCCAAGACATTTGAGTAA
AGAAAAACAAATATCAAATCACTGACTGCCAAATGGAATCTTTTTCGCTA
CAGGCCCGTCCGCAAACCGGTCAAAATTTCACATGACCATTCCCGAAACG
ATTTTATATTACACGAGGACGTGGGAAAAGATTTATATAATGCCTGGTCA
TTATACAAGCCTGGGTTAATATGTTTGTGTTACAAAACTATATAACGCCT
AATTTGCTGTGGGTGGTTGGAAGGGGGATAGTCGGCCGTGGCATAATTTG
TCGTCGTCGTTGCAAAAATATGCGCAAAGGATCGGCCGCCTCTGTACGTG
AGCAACTTCGGGCACTGTTGTTGGCAGGCAGAGTAGACAGAACACACTCG
TTGTGCCTCTGCGGCCCCCTATAACTCCAGAAGTGCATTCCGGTAAGTGA
TTTTGGAAAATCATATTCTGGAGAAAGATAAAAGAGAATCAACCTAAATA
GTCATTACCAAATAACTGTCATTTTTGTGTCTCCTTTGGTGTTCAGAGGC
CGTTGTCGGTAAGCTATGGGGACGACTCTAGGCAAAACGTACCGGTTCGT
ACTCTCGTGGGCTGCGTGTGAAGCGTATCGGGATGCATTCGGGGTGTATC
CCACCGTTGTTACTATAGTCAGATGGATTTCTTGTGCAGTGAGAAAAATG
TATTTCATGTGTGCACTCACCACGTGGGACGTTCATCTCCACCCGTTTTT
TTCGTGAATTTTTCGTTTTGAACTGTTGCGAGAGAGCATTTAGTTCTAAC
CCGCCTTAGCGGTTCGCCTCAAGCAGTACAGTCAACCGCGCGGTGACAAC
AGTAGTGTACCTGATAGTCATGTGTTGTCATTGCCCATAGAAAACCCATT
TGCCGCGCCGCGGTCTCCAACCTCCAGGCACGTGTACTGCACTGTAGATC
TCGTGTTATTAATAGCTCACGTCCTATTCCGTGTCGAGCGGTGCTACCAA
GTGCGAGTACTTGGTCATTAAATCCCCCCCCGTTCCCACCTTGCCCTCTC
TCTCCCTCTCTCTCCCTCTCTCTCCCTCTCCACGCGTTCGCGGAAGTAGG
ATTTGAGGTAACGATGAATCAGCCGCCACCAGGAGGGGGCCCGCCCGGTA
CGTTACAGTATTCTCAGTCGGGTAGTTTTTTAGATAATGCCTCTAAAAGT
TGACGCCCTAACTGGCGCGGCAGCAGTTCCAAGCTGAGCTTGAACTTGGC
GACTTGCTGTTTTTTTTCCGTGCGAAATCAAAATTTCAGTCATAGCGTCG
CAGTCGTGTGTATTATACAAATTGTAAAGAAGCATATAGGTGGAAAGTGT
TCACATAACTCTTTGATAGTGGATCAGCAGTATATTTAGGCTCGACCAAA
TATCGACTCTGCGCGCAGTATTGTTTATTTTTTGGCCATTTGGTCATCTC
GAGTCTTGATACATGATCGCGCTTTATTATCTGTTGTATGAAACACCGAC
CACCTGTATTTTACGTGTTTCAAACTTGAAAAAAAAATCTTGTCGAGGTT
TCCTGCTGATACCTGTGTTGACACATAGCATAACGCTGTGTACAATATTT
CTTGTCGTATTTTTCATTTTTTGATGTAGCAGTATTGGTGGAGCTAGCTA
ACACGTGTAGTCATTATCCAGTGTTTTTTCTCAATACACGTGCAGTGGCT
CTTGACGACTGCGGCTAGGAGATAAGAGTGCCCTGGGTCCAGTGTTCGTG
AAGATTTATTTCAAAAGATGTTTTCATGTCCAGAGCTTTGAAAATTGATC
CGAAACAAAAAGCATACTACCCTCTCCCGCAAATTGTACCCAATGTATGT
TTTGTCGCCCAATCCTGACATGAAGCTAGAGCTGAACGAGGTACAGTCAA
CTCTCATATTTTTCAAGAATTTACTTGGTTAGCGAGGAGTCCCGCAGCTG
CTGCAAGAGGGGCTTCAAAACCCCTTATGAATCTATTTTTCATTCCCTCC
CTTCCCCCCCCCCCCTCCCCTCCTCTTCGTCATGATATATCTCTTACAAT
ATTAGTAGTCATCCTCCAAATTCTCGTTTCCCCCCCATTTATTACATATT
CTCAATTTTGAGGTGCCGTAATCTAGTCGTCGCATATCCTGGAGCTTCCT
TCTTGACTCCTCGCCCCCCCCCCCATAATCATATATCTCACTCGCAGGTA
TGGGCGGACCTCCTCCAGGAATGGGCGGACCTCGTCCTCCGGGAATGGGG
GGTCCTCGTCCCCCGGGCATGGGTGGGCCGCCTCCTCCAGGAGGACATCC
TAACGGAAATAATCGCCAACAGGGCCCTCCTGGCATGAGTGGTGGCGGGC
CTCGTGGTGGGCCCATGATGGGAGGAGGGATGTTTCACGGCGGGCCGCCG
GGGATGCAAGGGGGAATGCCTCCCCCTGGAATGGGTAAGTCGGTGGGAAA
GGTTATCGGTCGTGTTGTCATTTTCTGTCGAGTTTTTGGTTTCTCGCATA
TTCCAAAAAAAGGAGGACAAAACAATGCATTCAAGATGCTCCTCGCCATA
TATCTGGTAGTTTTTTTAAAGGTGACGGGCAAATACAAGAAAAGTATGCA
GATACGTACGCAACACTACGAAAGCCTTGTGCATGAGTCATTCAGATGCT
AAATATAGCTCACCCCTTTGGCGTGTTTTCCTTGTTCGTATTTGTTTTGT
CTTGTGCCTCCTGGCGCTGTTCTTGGGCTGCTTGTCAGGAATGGGAGGAC
CGGGCATGGGTATGGGCATGGGTATGGGTATGCCGCCCCCGGGTATGGGT
GGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2448:3891..7993+

>mRNA_H-paniculata_contig2448.6631.1 ID=mRNA_H-paniculata_contig2448.6631.1|Name=mRNA_H-paniculata_contig2448.6631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig2448:3891..7993+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCAGCCGCCACCAGGAGGGGGCCCGCCCGATGAATCAGCCGCCAC
CAGGAGGGGGCCCGCCCGGTATGGGCGGACCTCCTCCAGGAATGGGCGGA
CCTCGTCCTCCGGGAATGGGGGGTCCTCGTCCCCCGGGCATGGGTGGGCC
GCCTCCTCCAGGAGGACATCCTAACGGAAATAATCGCCAACAGGGCCCTC
CTGGCATGAGTGGTGGCGGGCCTCGTGGTGGGCCCATGATGGGAGGAGGG
ATGTTTCACGGCGGGCCGCCGGGGATGCAAGGGGGAATGCCTCCCCCTGG
AATGGGTATGGGCGGACCTCCTCCAGGAATGGGCGGACCTCGTCCTCCGG
GAATGGGGGGTCCTCGTCCCCCGGGCATGGGTGGGCCGCCTCCTCCAGGA
GGACATCCTAACGGAAATAATCGCCAACAGGGCCCTCCTGGCATGAGTGG
TGGCGGGCCTCGTGGTGGGCCCATGATGGGAGGAGGGATGTTTCACGGCG
GGCCGCCGGGGATGCAAGGGGGAATGCCTCCCCCTGGAATGGGAATGGGA
GGACCGGGCATGGGTATGGGCATGGGTATGGGTATGCCGCCCCCGGGTAT
GGGTGGGGAATGGGAGGACCGGGCATGGGTATGGGCATGGGTATGGGTAT
GCCGCCCCCGGGTATGGGTGGG
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