mRNA_H-paniculata_contig11014.663.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: D8LSF3_ECTSI (40S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=2759 RepID=D8LSF3_ECTSI) HSP 1 Score: 204 bits (520), Expect = 5.670e-62 Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 1 Query: 316 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHRPKRD 633 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSA+TRR+R+PPVRHRPKRD Sbjct: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAETRRNRDPPVRHRPKRD 106
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A835YLU3_9STRA (40S ribosomal protein S26 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU3_9STRA) HSP 1 Score: 187 bits (476), Expect = 2.150e-55 Identity = 95/106 (89.62%), Postives = 100/106 (94.34%), Query Frame = 1 Query: 316 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHRPKRD 633 MTVKRRNHGRNKKGRGHV RVRC STAKAIPKDKAIKRFIVRNIVDASSLRD+REASV+ NYALPKLYIKQYYCVEAAVHQRIVRSRSA+ RR+REPP R RPKR+ Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVRCVSTAKAIPKDKAIKRFIVRNIVDASSLRDLREASVYANYALPKLYIKQYYCVEAAVHQRIVRSRSAEARRNREPPARVRPKRE 106
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A7S2SUN8_9STRA (40S ribosomal protein S26 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUN8_9STRA) HSP 1 Score: 175 bits (444), Expect = 1.780e-50 Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 1 Query: 316 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHR 621 MTVKRR+HGRNKKGRGHV RVRCAST KAIPKDKAIKRFIVRNIVDASS+RDIREAS F+NYALPKLYIKQYY VEAAVHQRIVRSRS + RR+REPP R R Sbjct: 15 MTVKRRSHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIREASAFENYALPKLYIKQYYSVEAAVHQRIVRSRSTENRRNREPPARFR 116
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A7S2MQP1_9STRA (40S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2MQP1_9STRA) HSP 1 Score: 174 bits (442), Expect = 4.850e-50 Identity = 86/101 (85.15%), Postives = 94/101 (93.07%), Query Frame = 1 Query: 313 RMTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVR 615 +MTVKRRNHGRNKKGRGHV RVRCAST KAIPKDKAIKRFIVRNIVDASS+RDIR+AS F+ YALPK+YIKQYYC+EAAVHQRIVRSRS + RR+REPP R Sbjct: 23 KMTVKRRNHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIRDASAFEAYALPKIYIKQYYCIEAAVHQRIVRSRSIENRRNREPPAR 123
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A7S3MCB3_9STRA (40S ribosomal protein S26 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCB3_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.660e-47 Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1 Query: 316 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHRP 624 MTVKRRNHGRNK GRGHV RVRC STAKAIPKDKAIKRF+VRNIVD+S+LRDI+E+S ++NY LPKLYIKQYYC+EAAVHQRIVR RSA R++R PPVR RP Sbjct: 1 MTVKRRNHGRNKHGRGHVKRVRCVSTAKAIPKDKAIKRFLVRNIVDSSALRDIKESSAYENYQLPKLYIKQYYCIEAAVHQRIVRVRSALDRKNRAPPVRVRP 103
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A067D0A6_SAPPC (40S ribosomal protein S26 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D0A6_SAPPC) HSP 1 Score: 167 bits (423), Expect = 1.660e-47 Identity = 80/105 (76.19%), Postives = 94/105 (89.52%), Query Frame = 1 Query: 316 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHRPKR 630 MTVKRRNHGRNKKGRGHV RV C STAK IPKDKAIKRF+VRN+VDAS++RD++EASV+++YALPK+YIK YY +EAA+HQRIVR RS D R++REPP R RPKR Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNMVDASAMRDLKEASVYESYALPKIYIKNYYSIEAAIHQRIVRVRSVDGRKNREPPARFRPKR 105
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A7S3K046_9STRA (40S ribosomal protein S26 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K046_9STRA) HSP 1 Score: 166 bits (420), Expect = 4.070e-47 Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 1 Query: 316 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHR 621 M VKRR HGRNKKGRGHV+RVRC ST KAIPKDKAIKRF+VRNIVDASS+RDIR+AS +++YALPKLYIKQYYC+EAAVHQRIVR RS R++REPP+R R Sbjct: 1 MAVKRRAHGRNKKGRGHVLRVRCVSTGKAIPKDKAIKRFVVRNIVDASSMRDIRDASAYESYALPKLYIKQYYCIEAAVHQRIVRLRSRTERKNREPPMRRR 102
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A7S0GMG9_9STRA (40S ribosomal protein S26 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GMG9_9STRA) HSP 1 Score: 166 bits (419), Expect = 6.490e-47 Identity = 85/106 (80.19%), Postives = 92/106 (86.79%), Query Frame = 1 Query: 316 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHRPKRD 633 MTVKRRNHGRNKKGRGHV RVRCAST KAIPKDKAIKRFIVRNIVDASSLRDI+EAS +D+Y LPKLY+K YYCVEAAVHQRIVR RS + R+ R PP R KR+ Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYDDYTLPKLYLKMYYCVEAAVHQRIVRGRSREGRKIRTPPPRPGFKRN 106
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A485LRR7_9STRA (40S ribosomal protein S26 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRR7_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.220e-46 Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 1 Query: 313 RMTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHRPKR 630 +MTVKRRNHGRNKK RGHV RV C STAK IPKDKAIKRF VRNIVDAS++RD++EASV++ YALPK+YIK YYC+EAA+HQRIVR RS + RR+REPP R RPK+ Sbjct: 31 KMTVKRRNHGRNKKNRGHVKRVHCVSTAKLIPKDKAIKRFTVRNIVDASAMRDLKEASVYETYALPKIYIKNYYCIEAAIHQRIVRVRSVEGRRNREPPARIRPKK 136
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Match: A0A4D9D267_9STRA (40S ribosomal protein S26 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D267_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.810e-46 Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1 Query: 316 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSADTRRHREPPVRHRP 624 MTVKRRNHGRNKKGRGHV RVRCAST KA+PKDKAIKR +VR+IVD SS RDI+EA VF+NY LPKLYIKQYY VEAAVHQR+VRSRS + RR REPP R RP Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRIREPPERKRP 103 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11014.663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11014.663.1 >prot_H-paniculata_contig11014.663.1 ID=prot_H-paniculata_contig11014.663.1|Name=mRNA_H-paniculata_contig11014.663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLback to top mRNA from alignment at H-paniculata_contig11014:4390..7745- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11014.663.1 ID=mRNA_H-paniculata_contig11014.663.1|Name=mRNA_H-paniculata_contig11014.663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3356bp|location=Sequence derived from alignment at H-paniculata_contig11014:4390..7745- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11014:4390..7745- >mRNA_H-paniculata_contig11014.663.1 ID=mRNA_H-paniculata_contig11014.663.1|Name=mRNA_H-paniculata_contig11014.663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig11014:4390..7745- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |