mRNA_H-paniculata_contig24471.6630.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24471.6630.1
Unique NamemRNA_H-paniculata_contig24471.6630.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: D8LTN0_ECTSI (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 7.990e-20
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 VLFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMIITK 147
            VLFEDNSVNRM ESL LF EVAGNPIF KTP+FVFLNKKDLFEEMI+TK
Sbjct:  233 VLFEDNSVNRMQESLELFTEVAGNPIFEKTPIFVFLNKKDLFEEMIVTK 281
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BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: A0A7S2Y0R1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0R1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.440e-17
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 VLFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMIIT 144
            VLFEDN+ NRMHESL LF +V  NPIF  TPMFVFLNKKDLFEEMI T
Sbjct:   58 VLFEDNTQNRMHESLQLFSDVVSNPIFKDTPMFVFLNKKDLFEEMIRT 105
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BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: A0A835Z6Q6_9STRA (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.000e-16
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 VLFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMII 141
            VLFED +VNRMHESL LF+EV  NPIF  TP+FVFLNKKDLFE+MI+
Sbjct:  230 VLFEDTAVNRMHESLQLFEEVVKNPIFTNTPVFVFLNKKDLFEQMIV 276
[Close]
BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: A0A835YXT9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.200e-15
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VLFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMI 138
            VLFED SVNRMHESL LF+E+  NPIF  TP+FVFLNKKDLFE+MI
Sbjct:  124 VLFEDTSVNRMHESLQLFEEIVKNPIFVNTPIFVFLNKKDLFEQMI 169
[Close]
BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: A0A6H5L6V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.030e-15
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   31 MHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMIITK 147
            MHESL LF EVAGNPIF KTP+FVFLNKKDLFEEMI+TK
Sbjct:    1 MHESLELFTEVAGNPIFEKTPIFVFLNKKDLFEEMIVTK 39
[Close]
BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: A0A835YY90_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY90_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.680e-14
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 LFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMI 138
            LFED SVNRM ESL LFK+V GNPIF  TP+F+FLNKKDLFE+MI
Sbjct:  226 LFEDASVNRMQESLKLFKQVVGNPIFKDTPIFLFLNKKDLFEQMI 270
[Close]
BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: A0A812S7L1_SYMMI (GpaH protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S7L1_SYMMI)

HSP 1 Score: 73.9 bits (180), Expect = 2.770e-14
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VLFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMI 138
            VLFEDN+VNRM ESL LF+++A NP+F  TP+F+FLNKKDLFE MI
Sbjct:  224 VLFEDNTVNRMQESLQLFEDIAKNPLFRDTPIFIFLNKKDLFENMI 269
[Close]
BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: A0A6H5L0R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.020e-14
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 VLFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMI 138
            VLFED  VNRMHE L LF+EV  NPIF  TP+FVFLNKKDLFE+M+
Sbjct:  229 VLFEDTGVNRMHEGLQLFEEVVRNPIFENTPIFVFLNKKDLFEQMM 274
[Close]
BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: A0A835ZKP0_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKP0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.890e-14
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 LFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMI 138
            LFED SVNRM ES+ LF++V GNPIF  TP+FVFLNK+DLFE+MI
Sbjct:  213 LFEDASVNRMQESIKLFRQVVGNPIFKTTPVFVFLNKRDLFEQMI 257
[Close]
BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Match: D8LBA2_ECTSI (GPA4, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA2_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.470e-13
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 LFEDNSVNRMHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMI 138
            LFED+S+N+M ESLNLF++V  NPIF  TP+F+FLNKKDLFE M+
Sbjct:  233 LFEDSSINKMRESLNLFRQVVSNPIFRSTPIFLFLNKKDLFETMV 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24471.6630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN0_ECTSI7.990e-2087.76GPA5, alpha subunit of a heterotrimeric G protein ... [more]
A0A7S2Y0R1_9STRA3.440e-1779.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z6Q6_9STRA6.000e-1676.60GPA5, alpha subunit of a heterotrimeric G protein ... [more]
A0A835YXT9_9STRA1.200e-1578.26P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5L6V2_9PHAE3.030e-1587.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YY90_9STRA1.680e-1477.78GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A812S7L1_SYMMI2.770e-1471.74GpaH protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6H5L0R0_9PHAE3.020e-1473.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZKP0_9STRA7.890e-1473.33GPA4, alpha subunit of a heterotrimeric G protein ... [more]
D8LBA2_ECTSI1.470e-1368.89GPA4, alpha subunit of a heterotrimeric G protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24471contigH-paniculata_contig24471:2758..2904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog2880.D8LTN0
Preferred namegpaH
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001664,GO:0003674,GO:0003824,GO:0003924,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005834,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0008150,GO:0009898,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0010810,GO:0010811,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019897,GO:0019898,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0030155,GO:0031234,GO:0031683,GO:0032092,GO:0032101,GO:0032103,GO:0032991,GO:0040012,GO:0040017,GO:0043393,GO:0043937,GO:0043938,GO:0044093,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0045595,GO:0045785,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051094,GO:0051098,GO:0051099,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098552,GO:0098562,GO:0098796,GO:0098797,GO:1900120,GO:1900122,GO:1902494,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1905360
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Exons1
Model size147
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.4031446-UTR-H-paniculata_contig24471:2757..27871622929708.4031446-UTR-H-paniculata_contig24471:2757..2787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24471 2758..2787 +
1691480976.4449837-UTR-H-paniculata_contig24471:2757..27871691480976.4449837-UTR-H-paniculata_contig24471:2757..2787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24471 2758..2787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.4197714-CDS-H-paniculata_contig24471:2787..29041622929708.4197714-CDS-H-paniculata_contig24471:2787..2904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24471 2788..2904 +
1691480976.4582577-CDS-H-paniculata_contig24471:2787..29041691480976.4582577-CDS-H-paniculata_contig24471:2787..2904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24471 2788..2904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24471.6630.1prot_H-paniculata_contig24471.6630.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24471 2788..2904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24471.6630.1

>prot_H-paniculata_contig24471.6630.1 ID=prot_H-paniculata_contig24471.6630.1|Name=mRNA_H-paniculata_contig24471.6630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
MHESLNLFKEVAGNPIFAKTPMFVFLNKKDLFEEMIITK
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mRNA from alignment at H-paniculata_contig24471:2758..2904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24471.6630.1 ID=mRNA_H-paniculata_contig24471.6630.1|Name=mRNA_H-paniculata_contig24471.6630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig24471:2758..2904+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGTTCGAAGACAACTCCGTAAATCGGATGCACGAGTCGCTCAACCT
GTTCAAGGAGGTGGCGGGTAATCCGATTTTCGCGAAAACACCCATGTTCG
TGTTTCTCAACAAAAAAGACCTCTTCGAGGAGATGATTATCACAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24471:2758..2904+

>mRNA_H-paniculata_contig24471.6630.1 ID=mRNA_H-paniculata_contig24471.6630.1|Name=mRNA_H-paniculata_contig24471.6630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig24471:2758..2904+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGAGTCGCTCAACCTGTTCAAGGAGGTGGCGGGTAATCCGATTTT
CGCGAAAACACCCATGTTCGTGTTTCTCAACAAAAAAGACCTCTTCGAGG
AGATGATTATCACAAAGATGCACGAGTCGCTCAACCTGTTCAAGGAGGTG
GCGGGTAATCCGATTTTCGCGAAAACACCCATGTTCGTGTTTCTCAACAA
AAAAGACCTCTTCGAGGAGATGATTATCACAAAG
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