mRNA_H-paniculata_contig24471.6629.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24471.6629.1
Unique NamemRNA_H-paniculata_contig24471.6629.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: D8LTN0_ECTSI (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN0_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.260e-40
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 KQARRLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            ++ARRLADPELE TDEDMIMTRTRTTGIIVTEFS+ PYT+SLVDVGGQRSERRKWMHCFDDVKA++FLVGLSGYHQ
Sbjct:  157 QEARRLADPELEVTDEDMIMTRTRTTGIIVTEFSDNPYTYSLVDVGGQRSERRKWMHCFDDVKAIVFLVGLSGYHQ 232
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: A0A835Z6Q6_9STRA (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.290e-36
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 KQARRLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            ++A RLA+P+ EPTDEDMIMTR RTTGI+VTEF +KPY+FSLVDVGGQRSERRKW+HCFDDVKA+IFL GLSGYHQ
Sbjct:  154 EEAMRLAEPDYEPTDEDMIMTRIRTTGIVVTEFEDKPYSFSLVDVGGQRSERRKWIHCFDDVKAIIFLEGLSGYHQ 229
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: A0A835ZKP0_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKP0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.900e-28
Identity = 51/75 (68.00%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    4 QARRLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            + +R++DP+ EPT+ED+IMTR RTTGI  TEF E PY +S+VDVGGQR+ERRKW+HCF++VKAV++LVGLSGY+Q
Sbjct:  137 EVQRISDPKYEPTEEDVIMTRVRTTGIDHTEFIEHPYNWSVVDVGGQRNERRKWIHCFENVKAVVYLVGLSGYNQ 211
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: A0A6S9GGW2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GGW2_HETAK)

HSP 1 Score: 111 bits (278), Expect = 8.650e-28
Identity = 49/65 (75.38%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:   34 EPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            +PT+EDMIMTR RTTGI++TEF + P  +++VDVGGQRSERRKW+HCFDDVKA+IFLVGLSGY+Q
Sbjct:  167 DPTEEDMIMTRVRTTGIVITEFDDGPSRYNIVDVGGQRSERRKWIHCFDDVKAIIFLVGLSGYNQ 231
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: A0A835YY90_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY90_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.240e-27
Identity = 49/75 (65.33%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    4 QARRLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            + +R+ADP  EPT++D+IMTR RTTGI  T+F E P+++S+VDVGGQR+ERRKW+HCF++VKAV++LVGLSGY+Q
Sbjct:  150 EVQRIADPGFEPTEDDVIMTRVRTTGIDSTDFVEPPFSYSVVDVGGQRNERRKWVHCFENVKAVVYLVGLSGYNQ 224
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: A0A482SN96_9ARCH (Guanine nucleotide-binding protein subunit alpha n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SN96_9ARCH)

HSP 1 Score: 107 bits (267), Expect = 7.800e-27
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   13 RLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQA 231
            R+AD    P +EDMIM R RTTGI+++E  E PY F +VDVGGQRSERRKW+HCFDDVKA+I+L  LSGY+Q+
Sbjct:  164 RIADNSFAPNEEDMIMARIRTTGIVISEVVETPYKFQVVDVGGQRSERRKWIHCFDDVKAIIYLASLSGYNQS 236
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: A0A7S2Y0R1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0R1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 9.500e-27
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:   58 MTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            MTR RTTGI+VT+FSE PY +++VDVGGQRSERRKW+HCFDDVKA+IFLVGLSGY+Q
Sbjct:    1 MTRVRTTGIVVTDFSEPPYNYNIVDVGGQRSERRKWIHCFDDVKAIIFLVGLSGYNQ 57
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: D8LBA2_ECTSI (GPA4, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA2_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.820e-26
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    7 ARRLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            A RL   +  PTDED+IMTR RTTGI  T+F+E PY +S+VDVGGQR+ERRKW+HCFD+V+ V+FLVGL+GY Q
Sbjct:  158 ALRLGQADFVPTDEDVIMTRIRTTGIDTTDFTEPPYMYSVVDVGGQRNERRKWIHCFDNVRCVVFLVGLNGYDQ 231
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: UPI0006449EC0 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449EC0)

HSP 1 Score: 103 bits (257), Expect = 1.190e-24
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   13 RLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            R  D +  PT+ED+IMTR RTTGI VTEF E P  F +VDVGGQR+ER+KW+HCFDDVKA++F+V L+GY Q
Sbjct:  161 RFLDDDFRPTEEDIIMTRVRTTGISVTEFDEGPVHFRVVDVGGQRNERKKWIHCFDDVKALLFVVNLAGYDQ 232
[Close]
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Match: GPA8_DICDI (Guanine nucleotide-binding protein alpha-8 subunit n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=GPA8_DICDI)

HSP 1 Score: 102 bits (253), Expect = 6.250e-24
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   13 RLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRSERRKWMHCFDDVKAVIFLVGLSGYHQ 228
            R  D +  PT+ED IMTR RTTGI VTEF E P  F +VDVGGQR+ER+KW+HCFDDVKA++F+V L+GY Q
Sbjct:  160 RFLDDDFVPTEEDCIMTRVRTTGISVTEFDEGPVHFRVVDVGGQRNERKKWIHCFDDVKALLFVVNLAGYDQ 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24471.6629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN0_ECTSI4.260e-4089.47GPA5, alpha subunit of a heterotrimeric G protein ... [more]
A0A835Z6Q6_9STRA1.290e-3681.58GPA5, alpha subunit of a heterotrimeric G protein ... [more]
A0A835ZKP0_9STRA1.900e-2868.00GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A6S9GGW2_HETAK8.650e-2875.38Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835YY90_9STRA1.240e-2765.33GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A482SN96_9ARCH7.800e-2765.75Guanine nucleotide-binding protein subunit alpha n... [more]
A0A7S2Y0R1_9STRA9.500e-2780.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LBA2_ECTSI3.820e-2666.22GPA4, alpha subunit of a heterotrimeric G protein ... [more]
UPI0006449EC01.190e-2465.28hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
GPA8_DICDI6.250e-2465.28Guanine nucleotide-binding protein alpha-8 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24471contigH-paniculata_contig24471:59..983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue3.3e-33
Seed eggNOG ortholog2880.D8LTN0
Preferred namegpaH
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
GOsGO:0001664,GO:0003674,GO:0003824,GO:0003924,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005834,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0008150,GO:0009898,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0010810,GO:0010811,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019897,GO:0019898,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0030155,GO:0031234,GO:0031683,GO:0032092,GO:0032101,GO:0032103,GO:0032991,GO:0040012,GO:0040017,GO:0043393,GO:0043937,GO:0043938,GO:0044093,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0045595,GO:0045785,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051094,GO:0051098,GO:0051099,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098552,GO:0098562,GO:0098796,GO:0098797,GO:1900120,GO:1900122,GO:1902494,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1905360
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Exons2
Model size232
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.3212357-CDS-H-paniculata_contig24471:58..1741622929708.3212357-CDS-H-paniculata_contig24471:58..174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24471 59..174 +
1691480976.4215217-CDS-H-paniculata_contig24471:58..1741691480976.4215217-CDS-H-paniculata_contig24471:58..174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24471 59..174 +
1622929708.3414314-CDS-H-paniculata_contig24471:867..9821622929708.3414314-CDS-H-paniculata_contig24471:867..982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24471 868..982 +
1691480976.4347494-CDS-H-paniculata_contig24471:867..9821691480976.4347494-CDS-H-paniculata_contig24471:867..982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24471 868..982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24471.6629.1prot_H-paniculata_contig24471.6629.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24471 59..982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24471.6629.1

>prot_H-paniculata_contig24471.6629.1 ID=prot_H-paniculata_contig24471.6629.1|Name=mRNA_H-paniculata_contig24471.6629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
KQARRLADPELEPTDEDMIMTRTRTTGIIVTEFSEKPYTFSLVDVGGQRS
ERRKWMHCFDDVKAVIFLVGLSGYHQA
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mRNA from alignment at H-paniculata_contig24471:59..983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24471.6629.1 ID=mRNA_H-paniculata_contig24471.6629.1|Name=mRNA_H-paniculata_contig24471.6629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=925bp|location=Sequence derived from alignment at H-paniculata_contig24471:59..983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAGGCACGACGATTGGCGGATCCGGAGCTGGAACCAACTGATGAGGA
TATGATCATGACGAGGACTAGGACGACGGGAATCATTGTGACAGAGTTCA
GCGAGAAGCCGTACACGTGCGCAGATATACGATACATAAATCACAGACCT
TGAACTTCGGCGATAAAAGATGAAAGGCAAATTGGAGGAAATACCTATGA
ACAAACAATCAAATAAACAGACAACGGAAATGCAGGACTATCGAGAAAGA
AGAGAAGGGACTAAAACACAATCTGATTGTGTACTTGTAAGTACTACCTT
GTGCATATTTCCGCCGATGGCCGGTGTTGGGTGCAAGGAATTTATGGATT
TTCAATAGGTAGAGCAGTATTCTATATTACTCCCACGAAGTGCTGTCTGG
CGGTGCCCTTTCCCACCATACACATAATCATCCCCAGGATGAGAACACCA
ATATGCTGTTATATGTAAATTCATGTTCCACCCGCATTATGAACGTTACC
ATCATAGTTCACTACGGAATATCGGCCAAAACCGCGGCAGGTACTTTGTG
TTATAATATTACTATTAATATTAATAATAATAACAATTATATATGTAATA
TTAATAGTAATAGTAATATTGGTGATGATAACAACAACGACAACAACAAC
AACGACAACAACAACAACAACAACAACAACAACAACAACAACATTAAGTC
ATCAAAACAAATACACCTCGACAGTACGTTTGCCCAGACTCCCCCCCCCC
CCCCTCGGCGCGGGCCTTGTCCCGCAATTCCCCCCACCGTTCCGCGCATC
GTTTCACAGGTTTTCGCTAGTTGATGTCGGGGGACAGCGCAGCGAGCGTC
GAAAATGGATGCATTGCTTTGACGATGTGAAAGCTGTCATATTCCTTGTG
GGGCTATCGGGATATCACCAGGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24471:59..983+

>mRNA_H-paniculata_contig24471.6629.1 ID=mRNA_H-paniculata_contig24471.6629.1|Name=mRNA_H-paniculata_contig24471.6629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig24471:59..983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAGGCACGACGATTGGCGGATCCGGAGCTGGAACCAACTGATGAGGA
TATGATCATGACGAGGACTAGGACGACGGGAATCATTGTGACAGAGTTCA
GCGAGAAGCCGTACACAAACAGGCACGACGATTGGCGGATCCGGAGCTGG
AACCAACTGATGAGGATATGATCATGACGAGGACTAGGACGACGGGAATC
ATTGTGACAGAGTTCAGCGAGAAGCCGTACACGTTTTCGCTAGTTGATGT
CGGGGGACAGCGCAGCGAGCGTCGAAAATGGATGCATTGCTTTGACGATG
TGAAAGCTGTCATATTCCTTGTGGGGCTATCGGGATATCACCAGGCGGTT
TTCGCTAGTTGATGTCGGGGGACAGCGCAGCGAGCGTCGAAAATGGATGC
ATTGCTTTGACGATGTGAAAGCTGTCATATTCCTTGTGGGGCTATCGGGA
TATCACCAGGCG
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